Wall clock time and date at job start Sat Apr 11 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00109 * 2 1 4 4 H 1.48500 * 109.47148 * 239.99918 * 3 2 1 5 5 H 1.48498 * 109.47227 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46815 * 119.99807 * 3 2 1 7 7 C 1.38807 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99909 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00454 * 359.97438 * 7 2 1 10 10 C 1.47021 * 125.64531 * 359.97438 * 9 7 2 11 11 C 1.54331 * 107.27146 * 178.97085 * 10 9 7 12 12 C 1.55159 * 102.93951 * 337.80534 * 11 10 9 13 13 H 1.09000 * 111.00847 * 277.38585 * 12 11 10 14 14 C 1.53001 * 111.00196 * 153.57559 * 12 11 10 15 15 N 1.46499 * 109.47097 * 178.18010 * 14 12 11 16 16 C 1.34780 * 119.99659 * 179.97438 * 15 14 12 17 17 O 1.21680 * 120.00313 * 5.04028 * 16 15 14 18 18 C 1.46710 * 119.99425 * 185.04022 * 16 15 14 19 19 C 1.36710 * 126.85740 * 4.76860 * 18 16 15 20 20 N 1.33312 * 107.83618 * 179.97438 * 19 18 16 21 21 C 1.30879 * 109.74164 * 359.72487 * 20 19 18 22 22 N 1.34736 * 109.13142 * 0.44821 * 21 20 19 23 23 C 1.40122 * 126.49656 * 179.82284 * 22 21 20 24 24 C 1.38845 * 120.06559 * 123.30463 * 23 22 21 25 25 C 1.38120 * 119.92985 * 179.78636 * 24 23 22 26 26 C 1.38285 * 120.06803 * 0.46356 * 25 24 23 27 27 C 1.38285 * 120.13461 * 359.79038 * 26 25 24 28 28 C 1.38118 * 120.06551 * 359.97123 * 27 26 25 29 29 C 1.47467 * 125.63336 * 179.97438 * 9 7 2 30 30 H 0.96996 * 119.99530 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.88541 * 59.55814 * 10 9 7 32 32 H 1.09003 * 110.01446 * 298.46031 * 10 9 7 33 33 H 1.09000 * 110.72088 * 219.44693 * 11 10 9 34 34 H 1.09003 * 110.87091 * 96.23953 * 11 10 9 35 35 H 1.09000 * 109.47110 * 58.17728 * 14 12 11 36 36 H 1.09008 * 109.47281 * 298.18210 * 14 12 11 37 37 H 0.96993 * 120.00146 * 0.02562 * 15 14 12 38 38 H 1.07997 * 126.07790 * 0.02562 * 19 18 16 39 39 H 1.08002 * 125.43232 * 180.28788 * 21 20 19 40 40 H 1.07997 * 120.03386 * 0.02562 * 24 23 22 41 41 H 1.07996 * 119.96637 * 180.20342 * 25 24 23 42 42 H 1.07997 * 119.92950 * 179.76128 * 26 25 24 43 43 H 1.07990 * 119.96396 * 179.97438 * 27 26 25 44 44 H 1.08001 * 120.02771 * 179.97438 * 28 27 26 45 45 H 1.09002 * 110.34866 * 85.25357 * 29 9 7 46 46 H 1.09002 * 110.40608 * 322.92173 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1375 -2.5327 0.0005 11 6 -0.4485 -4.0441 -0.0264 12 6 0.8514 -4.6559 -0.6122 13 1 0.8553 -4.5965 -1.7006 14 6 1.0368 -6.1008 -0.1442 15 7 2.2482 -6.6588 -0.7502 16 6 2.6144 -7.9272 -0.4792 17 8 1.8923 -8.6383 0.1943 18 6 3.8837 -8.4505 -0.9962 19 6 4.8380 -7.7546 -1.6848 20 7 5.8314 -8.5967 -1.9697 21 6 5.5557 -9.7836 -1.4921 22 7 4.3541 -9.7465 -0.8837 23 6 3.7065 -10.8164 -0.2517 24 6 3.3249 -10.7103 1.0791 25 6 2.6829 -11.7650 1.6980 26 6 2.4286 -12.9293 0.9965 27 6 2.8122 -13.0398 -0.3275 28 6 3.4502 -11.9868 -0.9533 29 6 1.9340 -3.7313 -0.0016 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5582 -2.0519 -0.8827 32 1 -0.5561 -2.0841 0.9015 33 1 -1.2990 -4.2513 -0.6759 34 1 -0.6327 -4.4206 0.9798 35 1 0.1734 -6.6939 -0.4456 36 1 1.1308 -6.1218 0.9416 37 1 2.7871 -6.1152 -1.3459 38 1 4.7950 -6.7086 -1.9499 39 1 6.1890 -10.6545 -1.5748 40 1 3.5265 -9.8027 1.6285 41 1 2.3828 -11.6820 2.7322 42 1 1.9299 -13.7540 1.4838 43 1 2.6126 -13.9504 -0.8726 44 1 3.7498 -12.0739 -1.9873 45 1 2.1682 -4.0422 1.0166 46 1 2.8328 -3.7410 -0.6182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028596181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:54 Heat of formation + Delta-G solvation = 86.301367 kcal Electronic energy + Delta-G solvation = -28506.622551 eV Core-core repulsion = 24591.171177 eV Total energy + Delta-G solvation = -3915.451374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.72817 -39.42883 -39.35129 -37.61498 -34.92704 -34.24511 -32.58119 -31.45368 -30.71269 -29.76515 -29.42741 -28.14988 -25.63539 -24.23654 -23.58268 -23.27945 -22.45143 -21.33350 -20.46401 -19.97539 -19.75197 -18.77545 -17.04741 -16.75276 -16.41939 -16.29335 -16.07280 -15.25847 -15.20858 -14.90681 -14.60661 -14.30972 -14.17829 -14.10327 -13.86899 -13.72513 -13.39692 -13.18404 -13.01520 -12.36713 -12.09007 -12.02166 -11.76174 -11.65245 -11.42058 -10.92293 -10.90781 -10.78184 -10.46520 -10.37185 -10.17539 -10.05091 -9.91932 -9.83119 -9.66042 -9.34648 -9.19469 -9.00932 -8.80805 -8.60150 -6.84087 -5.71576 -3.05257 0.54753 0.97549 1.23415 2.15021 2.57660 3.18937 3.20223 3.31398 3.40724 3.44993 3.46182 4.23384 4.43856 4.45392 4.49477 4.52104 4.70880 4.78501 4.96638 4.97392 5.05936 5.14494 5.20475 5.32570 5.39255 5.52855 5.53189 5.62187 5.67612 5.85890 5.91647 5.98636 6.02842 6.03264 6.08514 6.18386 6.31941 6.35805 6.40305 6.48153 6.51074 6.65698 6.88661 6.89077 7.39911 7.55216 7.57234 7.61835 7.82109 8.09586 8.25640 9.21745 9.82087 10.47868 11.40127 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019640 B = 0.002237 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.303197 B =12511.091489 C =13466.705086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.118 4.118 13 H 0.081 0.919 14 C 0.137 3.863 15 N -0.710 5.710 16 C 0.588 3.412 17 O -0.540 6.540 18 C -0.079 4.079 19 C 0.043 3.957 20 N -0.490 5.490 21 C 0.213 3.787 22 N -0.383 5.383 23 C 0.106 3.894 24 C -0.063 4.063 25 C -0.108 4.108 26 C -0.107 4.107 27 C -0.114 4.114 28 C -0.109 4.109 29 C 0.142 3.858 30 H 0.253 0.747 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.404 0.596 38 H 0.184 0.816 39 H 0.213 0.787 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.019 0.981 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.087 -26.903 -1.209 27.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.099 0.901 14 C 0.014 3.986 15 N -0.361 5.361 16 C 0.374 3.626 17 O -0.418 6.418 18 C -0.194 4.194 19 C -0.110 4.110 20 N -0.207 5.207 21 C -0.067 4.067 22 N -0.061 5.061 23 C 0.016 3.984 24 C -0.082 4.082 25 C -0.127 4.127 26 C -0.125 4.125 27 C -0.133 4.133 28 C -0.128 4.128 29 C 0.015 3.985 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.239 0.761 38 H 0.201 0.799 39 H 0.230 0.770 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.146 0.854 45 H 0.037 0.963 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.136 -27.032 -1.072 27.741 hybrid contribution -0.011 1.053 0.091 1.057 sum 6.126 -25.979 -0.981 26.710 Atomic orbital electron populations 1.69957 1.04883 1.25155 1.57003 1.24810 0.95734 0.97702 1.02240 0.86193 0.78444 0.83171 0.77911 1.21139 1.21615 1.21182 1.19010 0.90404 0.82437 1.43928 0.90499 1.44473 1.01702 0.99849 1.87202 1.21143 0.84335 0.88099 1.01150 1.22858 0.95361 0.99425 0.99668 1.22634 0.98747 0.91790 1.00662 0.90071 1.21446 0.85661 0.93565 0.97965 1.45734 1.28273 1.12552 1.49494 1.16735 0.83493 0.82182 0.80239 1.90839 1.53686 1.57380 1.39889 1.20989 1.00082 0.85667 1.12618 1.22769 0.89809 0.99993 0.98411 1.70207 1.27613 1.00165 1.22717 1.25308 0.85930 0.98938 0.96562 1.42697 1.15731 1.07187 1.40508 1.17628 1.01058 0.87306 0.92407 1.21048 0.95959 0.98838 0.92372 1.21072 0.98254 0.92786 1.00584 1.21310 0.98741 0.97909 0.94534 1.20993 0.98712 0.98456 0.95112 1.21043 0.99521 0.92506 0.99734 1.21588 0.93953 0.86155 0.96756 0.93703 0.93542 0.93896 0.91962 0.92208 0.91395 0.91162 0.76096 0.79882 0.77024 0.85414 0.85074 0.85375 0.85100 0.85374 0.96311 0.94525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.01 10.31 55.49 0.57 -26.44 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.23 -6.34 10.28 -15.06 -0.15 -6.50 16 8 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 9 N -0.61 -15.19 3.40 -170.03 -0.58 -15.76 16 10 C 0.18 4.23 5.37 -3.06 -0.02 4.21 16 11 C -0.13 -2.39 6.42 -24.89 -0.16 -2.55 16 12 C -0.12 -1.90 3.07 -88.47 -0.27 -2.17 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 14 C 0.14 1.89 5.13 -4.04 -0.02 1.87 16 15 N -0.71 -8.92 5.43 -61.61 -0.33 -9.25 16 16 C 0.59 8.10 7.77 -12.84 -0.10 8.00 16 17 O -0.54 -8.71 13.85 5.21 0.07 -8.64 16 18 C -0.08 -0.98 6.79 -82.07 -0.56 -1.54 16 19 C 0.04 0.50 11.36 -17.46 -0.20 0.30 16 20 N -0.49 -5.83 11.20 -14.36 -0.16 -5.99 16 21 C 0.21 2.10 12.32 -90.34 -1.11 0.99 16 22 N -0.38 -4.30 2.85 -58.63 -0.17 -4.47 16 23 C 0.11 1.13 5.37 -83.62 -0.45 0.68 16 24 C -0.06 -0.68 7.74 -39.40 -0.31 -0.99 16 25 C -0.11 -0.95 10.04 -39.61 -0.40 -1.35 16 26 C -0.11 -0.77 10.04 -39.55 -0.40 -1.17 16 27 C -0.11 -0.81 10.04 -39.61 -0.40 -1.21 16 28 C -0.11 -0.92 9.79 -39.40 -0.39 -1.31 16 29 C 0.14 2.77 6.56 -2.50 -0.02 2.75 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 32 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.00 8.04 -51.93 -0.42 0.59 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.03 8.04 -51.92 -0.42 0.62 16 37 H 0.40 4.38 7.41 -40.82 -0.30 4.08 16 38 H 0.18 1.68 7.50 -52.49 -0.39 1.28 16 39 H 0.21 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.13 1.53 7.70 -52.49 -0.40 1.13 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 44 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.02 0.38 7.96 -51.93 -0.41 -0.03 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -34.10 382.00 -11.37 -45.47 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.47 Total: 2.62 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -5.04 Total: -0.31 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: -0.67 Total: -61.91 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.07 Total: -8.64 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.10 -11.37 -45.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028596181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.776 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds