Wall clock time and date at job start Sat Apr 11 2020 06:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99931 * 2 1 4 4 H 1.48497 * 109.47310 * 269.99906 * 3 2 1 5 5 H 1.48503 * 109.47062 * 30.00190 * 3 2 1 6 6 H 1.48502 * 109.47270 * 149.99906 * 3 2 1 7 7 C 1.38814 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99795 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00058 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.64466 * 359.97438 * 9 7 2 11 11 C 1.54910 * 104.82766 * 155.90317 * 10 9 7 12 12 C 1.55159 * 101.58491 * 37.00948 * 11 10 9 13 13 H 1.08993 * 110.72231 * 83.03604 * 12 11 10 14 14 C 1.52993 * 110.71936 * 206.13518 * 12 11 10 15 15 N 1.46503 * 109.47308 * 182.55807 * 14 12 11 16 16 C 1.34773 * 120.00546 * 180.02562 * 15 14 12 17 17 O 1.21582 * 119.99713 * 359.97438 * 16 15 14 18 18 C 1.47660 * 120.00392 * 180.02562 * 16 15 14 19 19 C 1.41532 * 126.44452 * 179.97438 * 18 16 15 20 20 C 1.35362 * 105.55816 * 179.97438 * 19 18 16 21 21 N 1.35857 * 107.12009 * 0.02562 * 20 19 18 22 22 C 1.40116 * 124.95512 * 180.02562 * 21 20 19 23 23 C 1.38863 * 120.06950 * 179.97438 * 22 21 20 24 24 C 1.38112 * 119.93007 * 180.25785 * 23 22 21 25 25 C 1.38280 * 120.06810 * 359.46122 * 24 23 22 26 26 C 1.38283 * 120.13859 * 0.51418 * 25 24 23 27 27 C 1.38110 * 120.06993 * 359.76946 * 26 25 24 28 28 N 1.28477 * 110.08760 * 0.26080 * 21 20 19 29 29 C 1.47311 * 125.61576 * 180.19358 * 9 7 2 30 30 H 0.97001 * 119.99982 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.36480 * 37.06734 * 10 9 7 32 32 H 1.08994 * 110.45811 * 274.78368 * 10 9 7 33 33 H 1.09004 * 111.00536 * 278.93315 * 11 10 9 34 34 H 1.09000 * 111.03240 * 155.09861 * 11 10 9 35 35 H 1.09002 * 109.47592 * 62.55601 * 14 12 11 36 36 H 1.09006 * 109.47457 * 302.55388 * 14 12 11 37 37 H 0.97000 * 119.99277 * 359.97438 * 15 14 12 38 38 H 1.07993 * 127.22460 * 0.02562 * 19 18 16 39 39 H 1.07995 * 126.43917 * 179.97438 * 20 19 18 40 40 H 1.08002 * 120.03013 * 359.97356 * 23 22 21 41 41 H 1.08004 * 119.96173 * 179.72360 * 24 23 22 42 42 H 1.08004 * 119.92777 * 180.25991 * 25 24 23 43 43 H 1.08008 * 119.96213 * 179.74332 * 26 25 24 44 44 H 1.07994 * 120.03456 * 179.97438 * 27 26 25 45 45 H 1.08994 * 110.06421 * 61.68685 * 29 9 7 46 46 H 1.09001 * 109.85286 * 300.42182 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1415 -2.5332 0.0005 11 6 -0.4020 -3.9323 -0.6113 12 6 0.7785 -4.7525 -0.0272 13 1 0.5455 -5.1008 0.9790 14 6 1.1225 -5.9312 -0.9398 15 7 2.1975 -6.7207 -0.3336 16 6 2.6679 -7.8150 -0.9642 17 8 2.1999 -8.1472 -2.0360 18 6 3.7510 -8.6110 -0.3529 19 6 4.3441 -9.7776 -0.8919 20 6 5.2821 -10.1567 0.0074 21 7 5.2445 -9.2594 1.0268 22 6 6.0652 -9.2990 2.1618 23 6 5.9405 -8.3262 3.1449 24 6 6.7546 -8.3651 4.2599 25 6 7.6853 -9.3776 4.4033 26 6 7.8115 -10.3481 3.4264 27 6 7.0045 -10.3115 2.3062 28 7 4.3435 -8.3720 0.8006 29 6 1.9338 -3.7298 0.0030 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5997 -1.7588 -0.6147 32 1 -0.5282 -2.4863 1.0185 33 1 -0.3532 -3.8980 -1.6997 34 1 -1.3591 -4.3331 -0.2777 35 1 1.4496 -5.5565 -1.9097 36 1 0.2408 -6.5585 -1.0712 37 1 2.5711 -6.4554 0.5213 38 1 4.1001 -10.2630 -1.8252 39 1 5.9366 -11.0122 -0.0704 40 1 5.2109 -7.5375 3.0353 41 1 6.6611 -7.6061 5.0227 42 1 8.3179 -9.4082 5.2782 43 1 8.5423 -11.1354 3.5393 44 1 7.1038 -11.0695 1.5434 45 1 2.5282 -3.8685 0.9060 46 1 2.5618 -3.8539 -0.8793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028652870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:08 Heat of formation + Delta-G solvation = 104.291697 kcal Electronic energy + Delta-G solvation = -27970.068879 eV Core-core repulsion = 24055.397624 eV Total energy + Delta-G solvation = -3914.671255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.17810 -39.71524 -39.20073 -37.55053 -34.62150 -34.00364 -32.49534 -31.94328 -30.82001 -30.08999 -29.45938 -28.16521 -25.81047 -24.68670 -23.77990 -23.25263 -21.95523 -21.21303 -20.45827 -19.82757 -19.51887 -18.89003 -17.36468 -16.77401 -16.66117 -16.47292 -15.85922 -15.42268 -15.28677 -14.95148 -14.70158 -14.40673 -14.19604 -13.93007 -13.85553 -13.56910 -13.27878 -13.18494 -12.74541 -12.46458 -12.17759 -11.77144 -11.71565 -11.66078 -11.46145 -11.15959 -10.92834 -10.78002 -10.52345 -10.44356 -10.17013 -10.04802 -9.94768 -9.75056 -9.59883 -9.55501 -9.48721 -8.95283 -8.62529 -8.61701 -6.80359 -5.62788 -3.04133 0.30554 0.78375 1.59909 1.93669 2.00258 3.22399 3.23823 3.40535 3.41747 3.46490 3.48469 3.95098 4.23405 4.39837 4.44228 4.51035 4.61249 4.80424 4.84444 4.97275 5.13055 5.20474 5.30588 5.31337 5.43470 5.44798 5.46037 5.55860 5.71482 5.73384 5.79552 5.92983 5.94493 6.07457 6.12167 6.16503 6.19456 6.38772 6.47388 6.59857 6.61558 6.62730 6.76924 6.95409 7.42949 7.54566 7.65305 7.70557 7.88506 8.24014 8.39281 9.25024 9.85725 10.50994 11.41256 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.002379 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.050062 B =11765.079028 C =13624.070495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.114 4.114 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.709 5.709 16 C 0.601 3.399 17 O -0.535 6.535 18 C 0.000 4.000 19 C -0.168 4.168 20 C -0.019 4.019 21 N -0.235 5.235 22 C 0.136 3.864 23 C -0.108 4.108 24 C -0.097 4.097 25 C -0.121 4.121 26 C -0.098 4.098 27 C -0.129 4.129 28 N -0.256 5.256 29 C 0.140 3.860 30 H 0.252 0.748 31 H 0.107 0.893 32 H 0.012 0.988 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.407 0.593 38 H 0.169 0.831 39 H 0.185 0.815 40 H 0.144 0.856 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.019 0.981 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.444 -24.634 6.814 28.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.095 0.905 14 C 0.009 3.991 15 N -0.360 5.360 16 C 0.384 3.616 17 O -0.410 6.410 18 C -0.162 4.162 19 C -0.195 4.195 20 C -0.159 4.159 21 N -0.017 5.017 22 C 0.045 3.955 23 C -0.128 4.128 24 C -0.115 4.115 25 C -0.140 4.140 26 C -0.116 4.116 27 C -0.149 4.149 28 N -0.090 5.090 29 C 0.014 3.986 30 H 0.062 0.938 31 H 0.125 0.875 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.242 0.758 38 H 0.187 0.813 39 H 0.202 0.798 40 H 0.161 0.839 41 H 0.154 0.846 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.037 0.963 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 13.075 -23.876 6.972 28.101 hybrid contribution 0.754 0.336 -0.156 0.840 sum 13.828 -23.540 6.817 28.139 Atomic orbital electron populations 1.69797 1.04870 1.24718 1.57788 1.24785 0.95739 0.97698 1.02568 0.86073 0.78493 0.83361 0.77581 1.21597 1.21667 1.20784 1.19083 0.90495 0.82519 1.42837 0.90576 1.44579 1.01965 0.99701 1.86843 1.21928 0.84643 0.92532 0.98182 1.23006 0.95476 0.98557 1.00353 1.22444 0.98323 0.93965 0.98650 0.90549 1.21536 0.89009 0.91610 0.96994 1.45951 1.38459 1.26732 1.24854 1.16814 0.80586 0.80089 0.84083 1.90800 1.59098 1.70034 1.21054 1.22173 1.01282 0.99152 0.93562 1.21853 0.98168 0.97461 1.02014 1.23016 1.04213 0.98791 0.89834 1.42740 1.25037 1.18715 1.15235 1.17706 0.93189 0.98369 0.86197 1.21077 1.00555 0.98304 0.92832 1.21171 0.94708 0.98506 0.97130 1.21340 0.98596 0.94624 0.99394 1.21008 0.98582 0.99072 0.92977 1.20852 0.96119 0.98009 0.99953 1.73554 1.02894 1.14445 1.18070 1.21389 0.93465 0.85902 0.97795 0.93757 0.87511 0.97042 0.91774 0.92088 0.90921 0.91330 0.75751 0.81336 0.79753 0.83864 0.84603 0.85154 0.84767 0.84893 0.96307 0.95692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.19 10.09 55.49 0.56 -26.63 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -6.27 10.28 -15.06 -0.15 -6.42 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.74 3.40 -169.84 -0.58 -16.32 16 10 C 0.15 3.72 5.89 -2.53 -0.01 3.70 16 11 C -0.13 -2.54 6.54 -24.58 -0.16 -2.70 16 12 C -0.11 -1.98 2.98 -88.78 -0.26 -2.24 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.13 2.05 5.00 -4.04 -0.02 2.03 16 15 N -0.71 -10.48 5.43 -61.31 -0.33 -10.81 16 16 C 0.60 9.39 7.82 -12.41 -0.10 9.30 16 17 O -0.53 -9.72 16.92 5.29 0.09 -9.63 16 18 C 0.00 0.00 7.13 -82.75 -0.59 -0.59 16 19 C -0.17 -1.87 10.80 -39.35 -0.42 -2.29 16 20 C -0.02 -0.18 10.78 -16.79 -0.18 -0.36 16 21 N -0.24 -2.56 3.52 -10.55 -0.04 -2.60 16 22 C 0.14 1.25 6.66 -83.61 -0.56 0.70 16 23 C -0.11 -0.97 9.59 -39.40 -0.38 -1.35 16 24 C -0.10 -0.66 10.04 -39.61 -0.40 -1.05 16 25 C -0.12 -0.66 10.04 -39.55 -0.40 -1.06 16 26 C -0.10 -0.51 10.04 -39.61 -0.40 -0.90 16 27 C -0.13 -0.83 9.43 -39.40 -0.37 -1.20 16 28 N -0.26 -3.34 10.85 33.42 0.36 -2.98 16 29 C 0.14 2.96 6.66 -2.90 -0.02 2.94 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.11 2.94 5.87 -51.93 -0.30 2.63 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.23 8.00 -51.93 -0.42 0.81 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.41 5.61 8.12 -40.82 -0.33 5.28 16 38 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.19 0.87 6.96 -52.49 -0.37 0.50 16 40 H 0.14 1.39 7.65 -52.49 -0.40 0.99 16 41 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 42 H 0.13 0.42 8.06 -52.48 -0.42 -0.01 16 43 H 0.13 0.35 8.06 -52.48 -0.42 -0.07 16 44 H 0.13 0.55 6.65 -52.49 -0.35 0.20 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.03 0.54 7.73 -51.93 -0.40 0.14 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -34.40 384.35 -10.03 -44.43 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.34 Total: 3.38 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -4.52 Total: -1.97 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.03 Total: -59.33 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.40 -10.03 -44.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028652870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.717 kcal (2) G-P(sol) polarization free energy of solvation -34.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds