Wall clock time and date at job start Sat Apr 11 2020 06:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99908 * 2 1 4 4 H 1.48499 * 109.46924 * 269.99648 * 3 2 1 5 5 H 1.48498 * 109.47136 * 29.99423 * 3 2 1 6 6 H 1.48503 * 109.46936 * 149.99761 * 3 2 1 7 7 C 1.38813 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99664 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.47023 * 125.64876 * 0.03044 * 9 7 2 11 11 C 1.54315 * 107.27246 * 178.91466 * 10 9 7 12 12 C 1.55162 * 102.94224 * 337.80676 * 11 10 9 13 13 H 1.08997 * 111.00064 * 277.38908 * 12 11 10 14 14 C 1.52998 * 111.00417 * 153.57719 * 12 11 10 15 15 N 1.46496 * 109.47291 * 174.99984 * 14 12 11 16 16 C 1.34781 * 120.00294 * 180.02562 * 15 14 12 17 17 O 1.21576 * 119.99720 * 359.97438 * 16 15 14 18 18 C 1.47661 * 119.99978 * 180.02562 * 16 15 14 19 19 C 1.41533 * 126.44618 * 179.97438 * 18 16 15 20 20 C 1.35346 * 105.56119 * 180.02562 * 19 18 16 21 21 N 1.35853 * 107.12721 * 0.02562 * 20 19 18 22 22 C 1.40116 * 124.96110 * 179.97438 * 21 20 19 23 23 C 1.38857 * 120.06692 * 359.73302 * 22 21 20 24 24 C 1.38118 * 119.92505 * 179.74954 * 23 22 21 25 25 C 1.38279 * 120.07080 * 0.55162 * 24 23 22 26 26 C 1.38283 * 120.14031 * 359.70465 * 25 24 23 27 27 C 1.38114 * 120.06728 * 0.02562 * 26 25 24 28 28 N 1.28484 * 110.07866 * 359.97438 * 21 20 19 29 29 C 1.47425 * 125.64745 * 179.97438 * 9 7 2 30 30 H 0.96998 * 120.00323 * 0.02562 * 1 2 3 31 31 H 1.09011 * 109.88232 * 59.49493 * 10 9 7 32 32 H 1.09000 * 109.88153 * 298.33647 * 10 9 7 33 33 H 1.09000 * 110.72323 * 219.44405 * 11 10 9 34 34 H 1.08997 * 110.87419 * 96.23914 * 11 10 9 35 35 H 1.09005 * 109.47525 * 54.99741 * 14 12 11 36 36 H 1.09000 * 109.47235 * 295.00452 * 14 12 11 37 37 H 0.97006 * 119.99723 * 359.97438 * 15 14 12 38 38 H 1.08005 * 127.21611 * 0.02562 * 19 18 16 39 39 H 1.08008 * 126.43492 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.03662 * 0.02562 * 23 22 21 41 41 H 1.08004 * 119.96240 * 180.25454 * 24 23 22 42 42 H 1.07998 * 119.93033 * 179.71952 * 25 24 23 43 43 H 1.07996 * 119.96958 * 179.97438 * 26 25 24 44 44 H 1.07992 * 120.03836 * 179.97438 * 27 26 25 45 45 H 1.08998 * 110.36212 * 85.31695 * 29 9 7 46 46 H 1.08993 * 110.36729 * 322.99256 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1375 -2.5328 0.0016 11 6 -0.4484 -4.0441 -0.0249 12 6 0.8520 -4.6562 -0.6095 13 1 0.8566 -4.5972 -1.6978 14 6 1.0370 -6.1008 -0.1408 15 7 2.2059 -6.6836 -0.8042 16 6 2.5638 -7.9566 -0.5436 17 8 1.9168 -8.6212 0.2423 18 6 3.7424 -8.5437 -1.2119 19 6 4.2382 -9.8582 -1.0405 20 6 5.3221 -9.9454 -1.8463 21 7 5.4603 -8.7427 -2.4626 22 6 6.4686 -8.4224 -3.3813 23 6 7.4279 -9.3677 -3.7190 24 6 8.4175 -9.0506 -4.6289 25 6 8.4602 -7.7895 -5.1947 26 6 7.5093 -6.8442 -4.8564 27 6 6.5140 -7.1570 -3.9514 28 7 4.5314 -7.9417 -2.0800 29 6 1.9335 -3.7311 0.0017 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5576 -2.0523 -0.8821 32 1 -0.5544 -2.0843 0.9034 33 1 -1.2985 -4.2516 -0.6749 34 1 -0.6333 -4.4203 0.9813 35 1 0.1493 -6.6811 -0.3928 36 1 1.1866 -6.1162 0.9388 37 1 2.7220 -6.1534 -1.4316 38 1 3.8359 -10.6299 -0.4007 39 1 5.9583 -10.8088 -1.9746 40 1 7.3978 -10.3514 -3.2741 41 1 9.1616 -9.7867 -4.8951 42 1 9.2376 -7.5425 -5.9025 43 1 7.5455 -5.8601 -5.2997 44 1 5.7719 -6.4182 -3.6873 45 1 2.1667 -4.0418 1.0201 46 1 2.8328 -3.7405 -0.6140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028652871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:11 Heat of formation + Delta-G solvation = 102.952616 kcal Electronic energy + Delta-G solvation = -27966.518869 eV Core-core repulsion = 24051.789547 eV Total energy + Delta-G solvation = -3914.729322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.17758 -39.71079 -39.19628 -37.56368 -34.63086 -34.00063 -32.48843 -31.93768 -30.81834 -30.09248 -29.45518 -28.20137 -25.80457 -24.67073 -23.77593 -23.26081 -21.94816 -21.21064 -20.38116 -19.93118 -19.54560 -18.89180 -17.36841 -16.75017 -16.63811 -16.47076 -15.90909 -15.40628 -15.20766 -14.95690 -14.64849 -14.40582 -14.18688 -13.92680 -13.85596 -13.53164 -13.30930 -13.16145 -12.94420 -12.29948 -12.16893 -11.97819 -11.75294 -11.70365 -11.36341 -11.15111 -10.87905 -10.77478 -10.51668 -10.44308 -10.16951 -10.04381 -9.87308 -9.78675 -9.62410 -9.59690 -9.54884 -8.95537 -8.61491 -8.57443 -6.79973 -5.68575 -3.01820 0.31153 0.79223 1.59849 1.93751 2.00506 3.22266 3.24047 3.40141 3.41322 3.46230 3.48430 3.95408 4.23852 4.40397 4.44626 4.51690 4.62020 4.81144 4.84943 4.98009 5.13225 5.20270 5.27329 5.31382 5.44308 5.45432 5.47411 5.58405 5.71933 5.72649 5.80387 5.94145 5.95394 6.05466 6.10517 6.12837 6.20164 6.39260 6.46517 6.55297 6.58094 6.61422 6.73531 6.96071 7.42851 7.58950 7.66730 7.70357 7.85605 8.23322 8.29086 9.25122 9.85488 10.51924 11.43265 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010443 B = 0.002496 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.516443 B =11214.151585 C =13574.358944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.118 4.118 13 H 0.080 0.920 14 C 0.132 3.868 15 N -0.709 5.709 16 C 0.601 3.399 17 O -0.535 6.535 18 C 0.000 4.000 19 C -0.168 4.168 20 C -0.019 4.019 21 N -0.235 5.235 22 C 0.136 3.864 23 C -0.129 4.129 24 C -0.098 4.098 25 C -0.121 4.121 26 C -0.096 4.096 27 C -0.108 4.108 28 N -0.256 5.256 29 C 0.142 3.858 30 H 0.252 0.748 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.408 0.592 38 H 0.169 0.831 39 H 0.185 0.815 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.136 0.864 44 H 0.144 0.856 45 H 0.020 0.980 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.972 -22.147 -10.141 28.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.137 4.137 13 H 0.098 0.902 14 C 0.008 3.992 15 N -0.360 5.360 16 C 0.385 3.615 17 O -0.410 6.410 18 C -0.162 4.162 19 C -0.195 4.195 20 C -0.159 4.159 21 N -0.017 5.017 22 C 0.045 3.955 23 C -0.149 4.149 24 C -0.117 4.117 25 C -0.139 4.139 26 C -0.115 4.115 27 C -0.127 4.127 28 N -0.089 5.089 29 C 0.015 3.985 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.243 0.757 38 H 0.187 0.813 39 H 0.202 0.798 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.154 0.846 44 H 0.162 0.838 45 H 0.037 0.963 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 14.616 -21.339 -10.125 27.776 hybrid contribution 0.628 0.369 0.105 0.736 sum 15.244 -20.971 -10.020 27.795 Atomic orbital electron populations 1.69966 1.04863 1.24974 1.57212 1.24804 0.95727 0.97649 1.02382 0.86122 0.78591 0.83555 0.77525 1.21642 1.21684 1.20724 1.19057 0.90411 0.82465 1.43604 0.90521 1.44484 1.01750 0.99875 1.87168 1.21145 0.84315 0.88179 1.01091 1.22858 0.95381 0.99371 0.99730 1.22611 0.98625 0.91924 1.00572 0.90178 1.21478 0.86965 0.93280 0.97435 1.45950 1.31189 1.12659 1.46170 1.16811 0.81984 0.81717 0.81026 1.90796 1.53499 1.61245 1.35509 1.22168 0.98839 0.94581 1.00628 1.21848 0.97000 0.97419 1.03253 1.23013 1.02093 0.91161 0.99587 1.42743 1.19629 1.08878 1.30460 1.17706 0.88995 0.95936 0.92857 1.20852 0.94869 0.98994 1.00222 1.21007 0.97669 0.97111 0.95870 1.21340 0.99098 0.93463 1.00037 1.21177 0.93668 1.00154 0.96505 1.21082 0.99957 0.94876 0.96821 1.73558 0.99922 1.21119 1.14318 1.21582 0.94004 0.86092 0.96779 0.93786 0.93566 0.93895 0.91969 0.92138 0.91345 0.91019 0.75692 0.81345 0.79760 0.84900 0.84774 0.85154 0.84584 0.83837 0.96259 0.94586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.41 10.31 55.49 0.57 -26.83 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.61 -15.68 3.39 -170.09 -0.58 -16.26 16 10 C 0.18 4.34 5.37 -3.07 -0.02 4.33 16 11 C -0.13 -2.50 6.42 -24.90 -0.16 -2.66 16 12 C -0.12 -2.02 3.05 -88.48 -0.27 -2.29 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 14 C 0.13 2.00 5.13 -4.04 -0.02 1.98 16 15 N -0.71 -10.32 5.50 -61.31 -0.34 -10.65 16 16 C 0.60 9.26 7.82 -12.41 -0.10 9.16 16 17 O -0.54 -9.57 16.92 5.30 0.09 -9.48 16 18 C 0.00 -0.01 7.13 -82.76 -0.59 -0.60 16 19 C -0.17 -1.85 10.80 -39.36 -0.42 -2.27 16 20 C -0.02 -0.17 10.78 -16.80 -0.18 -0.36 16 21 N -0.24 -2.55 3.52 -10.55 -0.04 -2.59 16 22 C 0.14 1.25 6.66 -83.61 -0.56 0.70 16 23 C -0.13 -0.84 9.43 -39.40 -0.37 -1.21 16 24 C -0.10 -0.51 10.04 -39.61 -0.40 -0.91 16 25 C -0.12 -0.67 10.04 -39.55 -0.40 -1.07 16 26 C -0.10 -0.67 10.04 -39.61 -0.40 -1.07 16 27 C -0.11 -0.98 9.59 -39.39 -0.38 -1.36 16 28 N -0.26 -3.33 10.85 33.42 0.36 -2.97 16 29 C 0.14 2.94 6.65 -2.54 -0.02 2.93 16 30 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.05 1.24 7.38 -51.92 -0.38 0.86 16 32 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.15 7.96 -51.93 -0.41 0.73 16 37 H 0.41 5.58 8.19 -40.82 -0.33 5.25 16 38 H 0.17 1.59 8.06 -52.48 -0.42 1.16 16 39 H 0.19 0.86 6.96 -52.48 -0.37 0.49 16 40 H 0.13 0.55 6.65 -52.49 -0.35 0.20 16 41 H 0.13 0.36 8.06 -52.48 -0.42 -0.06 16 42 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 43 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 44 H 0.14 1.41 7.65 -52.49 -0.40 1.01 16 45 H 0.02 0.41 7.91 -51.93 -0.41 0.00 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 385.26 15.07 5.81 5.81 Total: -1.00 -34.58 385.26 -10.06 -44.64 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -6.39 Total: 2.67 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -4.53 Total: -1.63 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -0.02 Total: -59.30 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.58 -10.06 -44.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028652871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.594 kcal (2) G-P(sol) polarization free energy of solvation -34.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds