Wall clock time and date at job start Sat Apr 11 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99938 * 2 1 4 4 H 1.48494 * 109.46893 * 239.99754 * 3 2 1 5 5 H 1.48493 * 109.47177 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46967 * 119.99994 * 3 2 1 7 7 C 1.38816 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00105 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99731 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64924 * 359.97438 * 9 7 2 11 11 C 1.54908 * 104.83243 * 155.90350 * 10 9 7 12 12 C 1.55154 * 101.57822 * 37.01028 * 11 10 9 13 13 H 1.09003 * 110.72270 * 83.04279 * 12 11 10 14 14 C 1.53003 * 110.71957 * 206.13103 * 12 11 10 15 15 N 1.46494 * 109.47368 * 182.55828 * 14 12 11 16 16 C 1.34780 * 120.00137 * 180.02562 * 15 14 12 17 17 O 1.21601 * 119.99777 * 0.02562 * 16 15 14 18 18 C 1.47411 * 119.99899 * 180.02562 * 16 15 14 19 19 C 1.41332 * 126.41341 * 0.02562 * 18 16 15 20 20 N 1.30477 * 108.06742 * 180.24611 * 19 18 16 21 21 N 1.39932 * 108.91404 * 359.58280 * 20 19 18 22 22 C 1.40161 * 125.76953 * 180.20880 * 21 20 19 23 23 C 1.38846 * 120.06541 * 179.97438 * 22 21 20 24 24 C 1.38115 * 119.93030 * 179.77116 * 23 22 21 25 25 C 1.38279 * 120.06820 * 0.51462 * 24 23 22 26 26 C 1.38284 * 120.13610 * 359.73993 * 25 24 23 27 27 C 1.38121 * 120.06351 * 0.02562 * 26 25 24 28 28 C 1.34534 * 108.46193 * 0.42603 * 21 20 19 29 29 C 1.47309 * 125.61505 * 180.19556 * 9 7 2 30 30 H 0.97001 * 119.99835 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.36598 * 37.06561 * 10 9 7 32 32 H 1.08999 * 110.45928 * 274.79315 * 10 9 7 33 33 H 1.08997 * 111.00377 * 278.93544 * 11 10 9 34 34 H 1.09002 * 111.03333 * 155.09497 * 11 10 9 35 35 H 1.09005 * 109.46810 * 62.55826 * 14 12 11 36 36 H 1.08996 * 109.47215 * 302.56735 * 14 12 11 37 37 H 0.97002 * 120.00534 * 0.02562 * 15 14 12 38 38 H 1.08002 * 125.96153 * 359.97438 * 19 18 16 39 39 H 1.07998 * 120.03732 * 0.03025 * 23 22 21 40 40 H 1.08005 * 119.96714 * 180.27514 * 24 23 22 41 41 H 1.07997 * 119.93503 * 179.76418 * 25 24 23 42 42 H 1.07999 * 119.97327 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.02892 * 180.02562 * 27 26 25 44 44 H 1.07998 * 126.31533 * 179.77201 * 28 21 20 45 45 H 1.09000 * 110.06548 * 61.68134 * 29 9 7 46 46 H 1.09000 * 109.85383 * 300.42254 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0005 11 6 -0.4016 -3.9326 -0.6108 12 6 0.7784 -4.7524 -0.0254 13 1 0.5446 -5.1003 0.9808 14 6 1.1232 -5.9317 -0.9371 15 7 2.1976 -6.7208 -0.3297 16 6 2.6685 -7.8155 -0.9594 17 8 2.2018 -8.1478 -2.0320 18 6 3.7493 -8.6098 -0.3479 19 6 4.3866 -8.3493 0.8864 20 7 5.2902 -9.2709 1.0777 21 7 5.2690 -10.1584 -0.0040 22 6 6.0922 -11.2823 -0.1579 23 6 5.9694 -12.0855 -1.2837 24 6 6.7853 -13.1897 -1.4348 25 6 7.7163 -13.5016 -0.4611 26 6 7.8373 -12.7066 0.6638 27 6 7.0276 -11.5983 0.8183 28 6 4.3281 -9.7478 -0.8736 29 6 1.9338 -3.7298 0.0052 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5993 -1.7591 -0.6154 32 1 -0.5291 -2.4858 1.0182 33 1 -0.3519 -3.8988 -1.6992 34 1 -1.3590 -4.3332 -0.2777 35 1 1.4510 -5.5574 -1.9070 36 1 0.2416 -6.5589 -1.0690 37 1 2.5702 -6.4555 0.5257 38 1 4.1672 -7.5280 1.5526 39 1 5.2397 -11.8448 -2.0426 40 1 6.6934 -13.8123 -2.3125 41 1 8.3505 -14.3676 -0.5797 42 1 8.5650 -12.9529 1.4229 43 1 7.1228 -10.9776 1.6969 44 1 4.0725 -10.2212 -1.8100 45 1 2.5275 -3.8681 0.9087 46 1 2.5624 -3.8543 -0.8766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028669937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:14 Heat of formation + Delta-G solvation = 98.278680 kcal Electronic energy + Delta-G solvation = -27562.431586 eV Core-core repulsion = 23647.499587 eV Total energy + Delta-G solvation = -3914.931999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.04925 -39.68453 -39.06454 -37.54236 -34.64311 -34.04869 -32.47704 -31.78088 -30.68520 -30.01700 -29.38134 -28.13151 -25.69906 -24.43706 -23.72011 -23.26563 -22.04391 -21.08022 -20.44680 -19.87440 -19.61380 -18.79287 -17.15481 -16.78395 -16.33701 -15.94896 -15.89038 -15.68296 -15.33041 -14.91982 -14.69329 -14.42461 -14.37091 -14.07515 -13.76099 -13.51791 -13.26046 -13.14594 -12.73585 -12.48543 -12.20386 -11.86436 -11.74094 -11.67964 -11.47440 -11.31940 -10.94387 -10.83675 -10.77770 -10.40795 -10.14535 -10.01813 -9.91988 -9.73941 -9.58730 -9.54017 -9.49368 -8.94714 -8.63428 -8.53078 -6.82044 -5.63976 -3.05509 0.27020 0.76771 1.53395 1.81322 1.90311 3.23085 3.28663 3.39674 3.41538 3.45692 3.47001 3.97527 4.22031 4.38470 4.39132 4.49991 4.57746 4.76241 4.79821 4.85116 5.03046 5.12655 5.14804 5.28776 5.36277 5.42120 5.44751 5.54300 5.69228 5.72665 5.78005 5.91150 5.92093 6.04981 6.10511 6.15149 6.16660 6.36762 6.48359 6.57222 6.60756 6.62905 6.74789 6.92990 7.10775 7.52846 7.60510 7.63543 7.87146 8.29575 8.37938 9.23572 9.84407 10.49395 11.39863 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021634 B = 0.001809 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.967314 B =15476.628599 C =16283.120630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.223 4.223 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.134 3.866 15 N -0.719 5.719 16 C 0.592 3.408 17 O -0.552 6.552 18 C -0.276 4.276 19 C 0.093 3.907 20 N -0.290 5.290 21 N -0.314 5.314 22 C 0.154 3.846 23 C -0.138 4.138 24 C -0.093 4.093 25 C -0.127 4.127 26 C -0.097 4.097 27 C -0.115 4.115 28 C 0.125 3.875 29 C 0.140 3.860 30 H 0.252 0.748 31 H 0.107 0.893 32 H 0.012 0.988 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.400 0.600 38 H 0.199 0.801 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.192 0.808 45 H 0.019 0.981 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.538 -27.794 0.358 30.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.011 3.989 15 N -0.369 5.369 16 C 0.379 3.621 17 O -0.431 6.431 18 C -0.290 4.290 19 C -0.096 4.096 20 N -0.107 5.107 21 N -0.086 5.086 22 C 0.062 3.938 23 C -0.159 4.159 24 C -0.111 4.111 25 C -0.146 4.146 26 C -0.115 4.115 27 C -0.135 4.135 28 C -0.022 4.022 29 C 0.014 3.986 30 H 0.063 0.937 31 H 0.124 0.876 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.234 0.766 38 H 0.215 0.785 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.208 0.792 45 H 0.036 0.964 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 12.090 -28.249 0.372 30.729 hybrid contribution 0.031 1.354 0.022 1.354 sum 12.121 -26.895 0.394 29.502 Atomic orbital electron populations 1.69786 1.04865 1.24853 1.57604 1.24788 0.95737 0.97706 1.02489 0.86152 0.78398 0.83074 0.77871 1.21183 1.21570 1.21257 1.19034 0.90466 0.82527 1.43095 0.90603 1.44564 1.01945 0.99691 1.86863 1.21925 0.84650 0.92529 0.98185 1.23001 0.95512 0.98577 1.00335 1.22451 0.98299 0.94015 0.98650 0.90559 1.21467 0.89038 0.91502 0.96879 1.45833 1.39092 1.27275 1.24688 1.17118 0.80937 0.79979 0.84071 1.90773 1.60256 1.70368 1.21658 1.20396 1.07079 1.02024 0.99494 1.24312 0.92206 0.97358 0.95688 1.77251 1.23050 1.03129 1.07292 1.45672 1.27022 1.20093 1.15832 1.17611 0.93191 0.86220 0.96751 1.20922 1.02072 0.96080 0.96821 1.21011 0.94783 0.96019 0.99332 1.21294 0.98908 1.00161 0.94218 1.21120 0.98495 0.93932 0.97993 1.20961 0.95121 0.98402 0.98978 1.23002 0.88813 0.94661 0.95748 1.21391 0.93474 0.85946 0.97742 0.93701 0.87555 0.97041 0.91818 0.92122 0.91124 0.91546 0.76564 0.78460 0.84896 0.84767 0.85266 0.84897 0.84228 0.79159 0.96358 0.95682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.09 55.49 0.56 -26.28 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.22 -6.21 10.28 -15.06 -0.15 -6.37 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.34 3.40 -169.84 -0.58 -15.92 16 10 C 0.15 3.64 5.89 -2.53 -0.01 3.62 16 11 C -0.13 -2.47 6.54 -24.59 -0.16 -2.63 16 12 C -0.11 -1.87 2.98 -88.79 -0.26 -2.13 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 14 C 0.13 1.96 5.00 -4.04 -0.02 1.94 16 15 N -0.72 -9.20 5.42 -61.39 -0.33 -9.53 16 16 C 0.59 8.24 7.81 -12.52 -0.10 8.14 16 17 O -0.55 -9.46 16.90 5.28 0.09 -9.38 16 18 C -0.28 -3.23 6.13 -105.05 -0.64 -3.87 16 19 C 0.09 0.96 11.50 -16.95 -0.20 0.77 16 20 N -0.29 -3.33 11.77 30.88 0.36 -2.96 16 21 N -0.31 -3.35 3.77 -10.21 -0.04 -3.39 16 22 C 0.15 1.40 6.68 -83.60 -0.56 0.84 16 23 C -0.14 -0.97 9.45 -39.40 -0.37 -1.34 16 24 C -0.09 -0.50 10.04 -39.61 -0.40 -0.90 16 25 C -0.13 -0.65 10.04 -39.55 -0.40 -1.05 16 26 C -0.10 -0.58 10.04 -39.61 -0.40 -0.97 16 27 C -0.11 -0.94 9.65 -39.40 -0.38 -1.32 16 28 C 0.12 1.32 10.61 -16.43 -0.17 1.15 16 29 C 0.14 2.81 6.66 -2.91 -0.02 2.79 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.11 2.88 5.88 -51.93 -0.31 2.58 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.14 8.01 -51.93 -0.42 0.73 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.40 4.24 7.36 -40.82 -0.30 3.94 16 38 H 0.20 1.42 7.50 -52.49 -0.39 1.02 16 39 H 0.13 0.73 6.71 -52.49 -0.35 0.37 16 40 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 41 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 42 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 43 H 0.14 1.17 7.68 -52.49 -0.40 0.77 16 44 H 0.19 1.57 7.01 -52.49 -0.37 1.21 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.03 0.52 7.73 -51.93 -0.40 0.11 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -34.51 383.94 -9.80 -44.32 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.29 Total: 2.04 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -4.34 Total: -1.77 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.03 Total: -58.09 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.51 -9.80 -44.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028669937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.596 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds