Wall clock time and date at job start Sat Apr 11 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99938 * 2 1 4 4 H 1.48494 * 109.46893 * 239.99754 * 3 2 1 5 5 H 1.48493 * 109.47177 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46967 * 119.99994 * 3 2 1 7 7 C 1.38816 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00105 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99731 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64924 * 359.97438 * 9 7 2 11 11 C 1.54908 * 104.83243 * 155.90350 * 10 9 7 12 12 C 1.55154 * 101.57822 * 37.01028 * 11 10 9 13 13 H 1.09003 * 110.72270 * 83.04279 * 12 11 10 14 14 C 1.53003 * 110.71957 * 206.13103 * 12 11 10 15 15 N 1.46494 * 109.47368 * 182.55828 * 14 12 11 16 16 C 1.34780 * 120.00137 * 180.02562 * 15 14 12 17 17 O 1.21601 * 119.99777 * 0.02562 * 16 15 14 18 18 C 1.47411 * 119.99899 * 180.02562 * 16 15 14 19 19 C 1.41332 * 126.41341 * 0.02562 * 18 16 15 20 20 N 1.30477 * 108.06742 * 180.24611 * 19 18 16 21 21 N 1.39932 * 108.91404 * 359.58280 * 20 19 18 22 22 C 1.40161 * 125.76953 * 180.20880 * 21 20 19 23 23 C 1.38846 * 120.06541 * 179.97438 * 22 21 20 24 24 C 1.38115 * 119.93030 * 179.77116 * 23 22 21 25 25 C 1.38279 * 120.06820 * 0.51462 * 24 23 22 26 26 C 1.38284 * 120.13610 * 359.73993 * 25 24 23 27 27 C 1.38121 * 120.06351 * 0.02562 * 26 25 24 28 28 C 1.34534 * 108.46193 * 0.42603 * 21 20 19 29 29 C 1.47309 * 125.61505 * 180.19556 * 9 7 2 30 30 H 0.97001 * 119.99835 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.36598 * 37.06561 * 10 9 7 32 32 H 1.08999 * 110.45928 * 274.79315 * 10 9 7 33 33 H 1.08997 * 111.00377 * 278.93544 * 11 10 9 34 34 H 1.09002 * 111.03333 * 155.09497 * 11 10 9 35 35 H 1.09005 * 109.46810 * 62.55826 * 14 12 11 36 36 H 1.08996 * 109.47215 * 302.56735 * 14 12 11 37 37 H 0.97002 * 120.00534 * 0.02562 * 15 14 12 38 38 H 1.08002 * 125.96153 * 359.97438 * 19 18 16 39 39 H 1.07998 * 120.03732 * 0.03025 * 23 22 21 40 40 H 1.08005 * 119.96714 * 180.27514 * 24 23 22 41 41 H 1.07997 * 119.93503 * 179.76418 * 25 24 23 42 42 H 1.07999 * 119.97327 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.02892 * 180.02562 * 27 26 25 44 44 H 1.07998 * 126.31533 * 179.77201 * 28 21 20 45 45 H 1.09000 * 110.06548 * 61.68134 * 29 9 7 46 46 H 1.09000 * 109.85383 * 300.42254 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0005 11 6 -0.4016 -3.9326 -0.6108 12 6 0.7784 -4.7524 -0.0254 13 1 0.5446 -5.1003 0.9808 14 6 1.1232 -5.9317 -0.9371 15 7 2.1976 -6.7208 -0.3297 16 6 2.6685 -7.8155 -0.9594 17 8 2.2018 -8.1478 -2.0320 18 6 3.7493 -8.6098 -0.3479 19 6 4.3866 -8.3493 0.8864 20 7 5.2902 -9.2709 1.0777 21 7 5.2690 -10.1584 -0.0040 22 6 6.0922 -11.2823 -0.1579 23 6 5.9694 -12.0855 -1.2837 24 6 6.7853 -13.1897 -1.4348 25 6 7.7163 -13.5016 -0.4611 26 6 7.8373 -12.7066 0.6638 27 6 7.0276 -11.5983 0.8183 28 6 4.3281 -9.7478 -0.8736 29 6 1.9338 -3.7298 0.0052 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5993 -1.7591 -0.6154 32 1 -0.5291 -2.4858 1.0182 33 1 -0.3519 -3.8988 -1.6992 34 1 -1.3590 -4.3332 -0.2777 35 1 1.4510 -5.5574 -1.9070 36 1 0.2416 -6.5589 -1.0690 37 1 2.5702 -6.4555 0.5257 38 1 4.1672 -7.5280 1.5526 39 1 5.2397 -11.8448 -2.0426 40 1 6.6934 -13.8123 -2.3125 41 1 8.3505 -14.3676 -0.5797 42 1 8.5650 -12.9529 1.4229 43 1 7.1228 -10.9776 1.6969 44 1 4.0725 -10.2212 -1.8100 45 1 2.5275 -3.8681 0.9087 46 1 2.5624 -3.8543 -0.8766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028669937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:14 Heat of formation + Delta-G solvation = 77.169662 kcal Electronic energy + Delta-G solvation = -27563.346942 eV Core-core repulsion = 23647.499587 eV Total energy + Delta-G solvation = -3915.847355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.81906 -40.58829 -39.83996 -39.09305 -36.01814 -34.79142 -34.19483 -32.35147 -31.76153 -31.26520 -30.38527 -29.56725 -27.33062 -25.73886 -24.38899 -24.29633 -22.91274 -22.03915 -21.74423 -21.24549 -20.75992 -19.64380 -18.81581 -17.84025 -17.24949 -16.84993 -16.78273 -16.71476 -16.43955 -16.33126 -15.69872 -15.61698 -15.42942 -15.00820 -14.64800 -14.55188 -14.27593 -14.22787 -13.88708 -13.75303 -13.50137 -13.33079 -13.08985 -12.79481 -12.66016 -12.63096 -12.47695 -12.03945 -11.99584 -11.81920 -11.79570 -11.54039 -11.52019 -11.33670 -10.95589 -10.70988 -10.37670 -10.05675 -10.01349 -9.20413 -8.84941 -7.75118 -5.18783 -0.35330 0.30023 0.76371 1.11114 1.14394 1.47177 1.50125 1.56482 2.25486 2.38800 2.51254 2.75311 3.28209 3.34104 3.56065 3.67274 3.82502 3.86127 3.87203 3.98103 4.03324 4.11099 4.12016 4.21897 4.39566 4.47348 4.50966 4.56205 4.63093 4.70213 4.75804 4.87694 4.96248 4.99159 5.10412 5.10688 5.17585 5.32284 5.37188 5.39543 5.47064 5.49285 5.51948 5.66340 5.69993 5.86028 6.01900 6.33309 6.34797 6.60381 7.13820 7.25415 7.81955 8.45385 9.26376 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021634 B = 0.001809 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.967314 B =15476.628599 C =16283.120630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.239 4.239 8 H 0.079 0.921 9 N -0.628 5.628 10 C 0.152 3.848 11 C -0.122 4.122 12 C -0.094 4.094 13 H 0.098 0.902 14 C 0.146 3.854 15 N -0.711 5.711 16 C 0.596 3.404 17 O -0.589 6.589 18 C -0.296 4.296 19 C 0.097 3.903 20 N -0.314 5.314 21 N -0.313 5.313 22 C 0.119 3.881 23 C -0.144 4.144 24 C -0.093 4.093 25 C -0.122 4.122 26 C -0.100 4.100 27 C -0.131 4.131 28 C 0.127 3.873 29 C 0.136 3.864 30 H 0.246 0.754 31 H 0.070 0.930 32 H -0.009 1.009 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.412 0.588 38 H 0.224 0.776 39 H 0.144 0.856 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.154 0.846 43 H 0.128 0.872 44 H 0.209 0.791 45 H 0.031 0.969 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.975 -30.192 0.386 32.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.368 4.368 8 H 0.097 0.903 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.161 4.161 12 C -0.113 4.113 13 H 0.116 0.884 14 C 0.022 3.978 15 N -0.361 5.361 16 C 0.384 3.616 17 O -0.470 6.470 18 C -0.310 4.310 19 C -0.091 4.091 20 N -0.132 5.132 21 N -0.084 5.084 22 C 0.029 3.971 23 C -0.164 4.164 24 C -0.112 4.112 25 C -0.140 4.140 26 C -0.118 4.118 27 C -0.151 4.151 28 C -0.021 4.021 29 C 0.011 3.989 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.008 0.992 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.249 0.751 38 H 0.241 0.759 39 H 0.162 0.838 40 H 0.179 0.821 41 H 0.176 0.824 42 H 0.172 0.828 43 H 0.146 0.854 44 H 0.225 0.775 45 H 0.049 0.951 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 13.570 -30.683 0.434 33.553 hybrid contribution -0.312 1.968 0.005 1.992 sum 13.258 -28.715 0.439 31.631 Atomic orbital electron populations 1.70050 1.06110 1.24986 1.58644 1.25621 0.96660 1.00924 1.02912 0.85147 0.77127 0.78923 0.78104 1.20523 1.21944 1.20418 1.19414 0.90977 0.83957 1.42445 0.90320 1.44885 1.02798 1.00967 1.86817 1.21726 0.84045 0.94927 0.96635 1.22842 0.97835 0.95446 1.00015 1.22290 0.95643 0.93282 1.00065 0.88365 1.21210 0.89930 0.91022 0.95594 1.45686 1.38610 1.26792 1.25046 1.17328 0.80883 0.79881 0.83497 1.90749 1.61619 1.71380 1.23300 1.20251 1.07508 1.02778 1.00482 1.24716 0.91323 0.97583 0.95455 1.77217 1.23877 1.03826 1.08267 1.45825 1.26938 1.20245 1.15414 1.17988 0.94206 0.86697 0.98253 1.21191 1.02616 0.96242 0.96373 1.21407 0.94005 0.95507 1.00249 1.21703 0.98535 1.00414 0.93319 1.21418 0.98294 0.93148 0.98959 1.21050 0.95914 0.99370 0.98740 1.23326 0.88299 0.94326 0.96152 1.21577 0.94798 0.84594 0.97902 0.94403 0.91217 0.99152 0.91944 0.89193 0.92815 0.90441 0.75130 0.75938 0.83804 0.82090 0.82404 0.82837 0.85365 0.77459 0.95082 0.96131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.74 10.09 21.65 0.22 -56.52 16 2 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 3 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.24 -13.46 10.28 84.03 0.86 -12.60 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.63 -32.15 3.40 -691.25 -2.35 -34.50 16 10 C 0.15 7.38 5.89 86.85 0.51 7.90 16 11 C -0.12 -4.34 6.54 31.98 0.21 -4.13 16 12 C -0.09 -2.87 2.98 -9.61 -0.03 -2.89 16 13 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 14 C 0.15 3.99 5.00 86.38 0.43 4.43 16 15 N -0.71 -16.97 5.42 -466.39 -2.53 -19.50 16 16 C 0.60 15.99 7.81 86.66 0.68 16.66 16 17 O -0.59 -19.87 16.90 -4.03 -0.07 -19.94 16 18 C -0.30 -6.69 6.13 -20.14 -0.12 -6.81 16 19 C 0.10 1.92 11.50 85.66 0.99 2.90 16 20 N -0.31 -7.11 11.77 -56.23 -0.66 -7.77 16 21 N -0.31 -6.57 3.77 -186.20 -0.70 -7.28 16 22 C 0.12 2.11 6.68 38.10 0.25 2.37 16 23 C -0.14 -1.81 9.45 22.39 0.21 -1.60 16 24 C -0.09 -0.76 10.04 22.25 0.22 -0.54 16 25 C -0.12 -0.90 10.04 22.29 0.22 -0.67 16 26 C -0.10 -1.01 10.04 22.25 0.22 -0.79 16 27 C -0.13 -2.09 9.65 22.39 0.22 -1.87 16 28 C 0.13 2.62 10.61 84.24 0.89 3.51 16 29 C 0.14 5.32 6.66 86.67 0.58 5.90 16 30 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.07 3.92 5.88 -2.39 -0.01 3.91 16 32 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H 0.06 2.23 8.05 -2.39 -0.02 2.21 16 34 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.05 1.68 8.01 -2.38 -0.02 1.66 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.41 7.81 7.36 -92.71 -0.68 7.12 16 38 H 0.22 2.82 7.50 -2.91 -0.02 2.79 16 39 H 0.14 1.36 6.71 -2.91 -0.02 1.34 16 40 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 41 H 0.16 0.25 8.06 -2.91 -0.02 0.23 16 42 H 0.15 0.81 8.06 -2.91 -0.02 0.79 16 43 H 0.13 2.23 7.68 -2.91 -0.02 2.21 16 44 H 0.21 3.27 7.01 -2.91 -0.02 3.25 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.02 0.83 7.73 -2.39 -0.02 0.81 16 Total: -1.00 -76.85 383.94 3.07 -73.77 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.32 Total: 15.39 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 6.82 Total: 8.31 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -6.03 Total: -125.57 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.07 Total: -19.94 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -76.85 3.07 -73.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028669937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.943 kcal (2) G-P(sol) polarization free energy of solvation -76.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds