Wall clock time and date at job start Sat Apr 11 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47149 * 300.00451 * 3 2 1 6 6 H 1.48501 * 109.46780 * 60.00340 * 3 2 1 7 7 C 1.38806 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99984 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.47471 * 125.62509 * 359.91425 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.14198 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09005 * 110.72052 * 277.11432 * 12 11 10 14 14 C 1.52999 * 110.71830 * 154.02508 * 12 11 10 15 15 N 1.46505 * 109.47097 * 174.99627 * 14 12 11 16 16 C 1.34776 * 119.99638 * 179.97438 * 15 14 12 17 17 O 1.21600 * 120.00333 * 0.02562 * 16 15 14 18 18 C 1.47419 * 119.99545 * 179.97438 * 16 15 14 19 19 C 1.41325 * 126.40846 * 359.69983 * 18 16 15 20 20 N 1.30481 * 108.06646 * 179.85278 * 19 18 16 21 21 N 1.39941 * 108.91308 * 0.39937 * 20 19 18 22 22 C 1.40148 * 125.76891 * 179.71653 * 21 20 19 23 23 C 1.38848 * 120.06577 * 179.75507 * 22 21 20 24 24 C 1.38114 * 119.93228 * 179.69775 * 23 22 21 25 25 C 1.38286 * 120.06646 * 0.60066 * 24 23 22 26 26 C 1.38281 * 120.13628 * 359.67345 * 25 24 23 27 27 C 1.38120 * 120.06341 * 0.02562 * 26 25 24 28 28 C 1.34533 * 108.45482 * 359.74452 * 21 20 19 29 29 C 1.47017 * 125.65517 * 179.97438 * 9 7 2 30 30 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 31 31 H 1.09008 * 110.34870 * 85.32328 * 10 9 7 32 32 H 1.09001 * 110.40581 * 322.99363 * 10 9 7 33 33 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 34 34 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 35 35 H 1.09006 * 109.47109 * 294.99535 * 14 12 11 36 36 H 1.09000 * 109.47466 * 54.99291 * 14 12 11 37 37 H 0.97001 * 119.99810 * 0.02562 * 15 14 12 38 38 H 1.08004 * 125.97156 * 359.97438 * 19 18 16 39 39 H 1.07997 * 120.03428 * 359.97438 * 23 22 21 40 40 H 1.08003 * 119.96833 * 180.29303 * 24 23 22 41 41 H 1.08003 * 119.93306 * 179.69980 * 25 24 23 42 42 H 1.07997 * 119.96620 * 179.97438 * 26 25 24 43 43 H 1.08006 * 120.03118 * 180.02562 * 27 26 25 44 44 H 1.07997 * 126.31017 * 180.02562 * 28 21 20 45 45 H 1.08998 * 109.88206 * 59.48273 * 29 9 7 46 46 H 1.09007 * 109.88177 * 298.32145 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1419 -2.5328 0.0018 11 6 -0.4008 -3.9322 0.6134 12 6 0.7787 -4.7524 0.0273 13 1 0.5451 -5.0983 -0.9797 14 6 1.1214 -5.9336 0.9373 15 7 2.1545 -6.7556 0.3022 16 6 2.6164 -7.8577 0.9256 17 8 2.1754 -8.1700 2.0149 18 6 3.6556 -8.6851 0.2862 19 6 4.2554 -8.4538 -0.9724 20 7 5.1276 -9.4007 -1.1851 21 7 5.1220 -10.2762 -0.0934 22 6 5.9197 -11.4203 0.0433 23 6 5.8206 -12.2052 1.1843 24 6 6.6037 -13.3356 1.3133 25 6 7.4947 -13.6791 0.3131 26 6 7.5998 -12.8962 -0.8219 27 6 6.8149 -11.7681 -0.9595 28 6 4.2208 -9.8342 0.8024 29 6 1.9319 -3.7274 -0.0016 30 1 -0.4850 0.8400 0.0004 31 1 -0.5290 -2.4860 -1.0162 32 1 -0.5991 -1.7588 0.6182 33 1 -1.3585 -4.3328 0.2810 34 1 -0.3505 -3.8984 1.7017 35 1 1.4902 -5.5610 1.8930 36 1 0.2283 -6.5362 1.1025 37 1 2.5066 -6.5062 -0.5666 38 1 4.0324 -7.6351 -1.6405 39 1 5.1287 -11.9346 1.9681 40 1 6.5236 -13.9492 2.1985 41 1 8.1094 -14.5608 0.4184 42 1 8.2968 -13.1668 -1.6012 43 1 6.8971 -11.1572 -1.8464 44 1 3.9835 -10.2933 1.7507 45 1 2.5596 -3.8509 0.8809 46 1 2.5271 -3.8643 -0.9045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028669939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:17 Heat of formation + Delta-G solvation = 98.060713 kcal Electronic energy + Delta-G solvation = -27544.884917 eV Core-core repulsion = 23629.943466 eV Total energy + Delta-G solvation = -3914.941451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.05287 -39.68636 -39.06599 -37.55725 -34.65205 -34.05295 -32.48365 -31.78321 -30.68883 -30.02330 -29.38758 -28.13785 -25.70202 -24.44048 -23.72323 -23.26807 -22.04285 -21.08262 -20.45165 -19.89353 -19.61928 -18.78884 -17.15493 -16.78991 -16.34222 -15.95264 -15.89810 -15.69234 -15.32382 -14.91881 -14.70225 -14.42765 -14.37801 -14.07745 -13.75324 -13.51558 -13.26342 -13.14948 -12.73565 -12.48631 -12.20630 -11.86841 -11.75181 -11.69277 -11.48799 -11.32267 -10.94057 -10.84039 -10.81230 -10.39502 -10.11649 -9.99867 -9.92608 -9.74780 -9.58957 -9.54355 -9.49710 -8.95046 -8.64413 -8.53352 -6.82102 -5.64714 -3.06157 0.26732 0.76556 1.53135 1.81004 1.89926 3.22854 3.28290 3.39345 3.40283 3.45850 3.48295 3.97179 4.21778 4.38189 4.38879 4.49572 4.57503 4.75912 4.79579 4.84802 5.02781 5.12470 5.14545 5.28018 5.36044 5.41872 5.44293 5.54137 5.68981 5.73116 5.77775 5.91073 5.91871 6.04622 6.10382 6.14797 6.16391 6.36891 6.47641 6.57630 6.60621 6.62640 6.74691 6.93037 7.10364 7.52660 7.60167 7.64344 7.86818 8.29239 8.37424 9.23141 9.84164 10.48904 11.39341 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022201 B = 0.001792 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.918789 B =15622.592324 C =16383.141316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.134 3.866 15 N -0.719 5.719 16 C 0.592 3.408 17 O -0.551 6.551 18 C -0.276 4.276 19 C 0.093 3.907 20 N -0.290 5.290 21 N -0.314 5.314 22 C 0.154 3.846 23 C -0.138 4.138 24 C -0.093 4.093 25 C -0.127 4.127 26 C -0.097 4.097 27 C -0.115 4.115 28 C 0.125 3.875 29 C 0.141 3.859 30 H 0.251 0.749 31 H 0.012 0.988 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.400 0.600 38 H 0.199 0.801 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.192 0.808 45 H 0.025 0.975 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.180 -28.166 -0.616 30.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.134 4.134 13 H 0.095 0.905 14 C 0.011 3.989 15 N -0.369 5.369 16 C 0.379 3.621 17 O -0.430 6.430 18 C -0.290 4.290 19 C -0.096 4.096 20 N -0.107 5.107 21 N -0.086 5.086 22 C 0.062 3.938 23 C -0.159 4.159 24 C -0.111 4.111 25 C -0.146 4.146 26 C -0.115 4.115 27 C -0.135 4.135 28 C -0.022 4.022 29 C 0.015 3.985 30 H 0.062 0.938 31 H 0.030 0.970 32 H 0.124 0.876 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.234 0.766 38 H 0.215 0.785 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.208 0.792 45 H 0.042 0.958 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 11.729 -28.646 -0.647 30.961 hybrid contribution 0.024 1.376 -0.004 1.376 sum 11.753 -27.270 -0.651 29.702 Atomic orbital electron populations 1.69810 1.04866 1.24626 1.57788 1.24790 0.95741 0.97722 1.02528 0.86003 0.78651 0.83647 0.77234 1.20555 1.21787 1.21743 1.19127 0.90530 0.82503 1.42811 0.90486 1.44523 1.01996 0.99746 1.86823 1.21942 0.84666 0.92516 0.98194 1.23006 0.95533 0.98576 1.00339 1.22447 0.98302 0.93994 0.98659 0.90549 1.21470 0.90006 0.90902 0.96501 1.45839 1.41781 1.26121 1.23157 1.17119 0.80530 0.80089 0.84370 1.90773 1.59909 1.71625 1.20733 1.20394 1.08201 1.01589 0.98807 1.24311 0.92547 0.97195 0.95518 1.77255 1.23097 1.03306 1.07070 1.45668 1.29074 1.19346 1.14528 1.17609 0.93829 0.85756 0.96584 1.20922 1.02280 0.96062 0.96629 1.21013 0.95099 0.95708 0.99325 1.21297 0.99014 1.00255 0.94015 1.21118 0.98463 0.93890 0.98068 1.20962 0.95521 0.98142 0.98837 1.22999 0.89337 0.94301 0.95583 1.21335 0.93462 0.85932 0.97745 0.93801 0.96998 0.87560 0.92124 0.91818 0.91113 0.91516 0.76573 0.78462 0.84896 0.84765 0.85264 0.84897 0.84229 0.79161 0.95754 0.96384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.85 10.09 55.49 0.56 -26.29 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 9 N -0.60 -15.35 3.40 -170.04 -0.58 -15.93 16 10 C 0.15 3.63 5.89 -2.50 -0.01 3.62 16 11 C -0.14 -2.48 6.53 -24.58 -0.16 -2.64 16 12 C -0.11 -1.87 2.95 -88.79 -0.26 -2.13 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 14 C 0.13 1.95 5.02 -4.04 -0.02 1.93 16 15 N -0.72 -9.16 5.46 -61.38 -0.34 -9.49 16 16 C 0.59 8.21 7.81 -12.52 -0.10 8.11 16 17 O -0.55 -9.45 16.90 5.28 0.09 -9.36 16 18 C -0.28 -3.21 6.13 -105.05 -0.64 -3.86 16 19 C 0.09 0.95 11.50 -16.95 -0.20 0.76 16 20 N -0.29 -3.31 11.77 30.87 0.36 -2.95 16 21 N -0.31 -3.34 3.77 -10.21 -0.04 -3.38 16 22 C 0.15 1.40 6.68 -83.60 -0.56 0.84 16 23 C -0.14 -0.97 9.45 -39.40 -0.37 -1.34 16 24 C -0.09 -0.50 10.04 -39.61 -0.40 -0.90 16 25 C -0.13 -0.65 10.04 -39.55 -0.40 -1.05 16 26 C -0.10 -0.57 10.04 -39.61 -0.40 -0.97 16 27 C -0.11 -0.93 9.65 -39.40 -0.38 -1.31 16 28 C 0.12 1.31 10.60 -16.43 -0.17 1.14 16 29 C 0.14 2.84 6.76 -3.07 -0.02 2.82 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.11 2.88 5.88 -51.93 -0.31 2.58 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 35 H 0.07 1.14 7.95 -51.93 -0.41 0.73 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.40 4.19 7.42 -40.82 -0.30 3.89 16 38 H 0.20 1.40 7.50 -52.48 -0.39 1.01 16 39 H 0.13 0.72 6.71 -52.49 -0.35 0.37 16 40 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 41 H 0.13 0.36 8.06 -52.48 -0.42 -0.06 16 42 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 43 H 0.14 1.16 7.68 -52.48 -0.40 0.76 16 44 H 0.19 1.57 7.01 -52.49 -0.37 1.20 16 45 H 0.02 0.50 7.70 -51.93 -0.40 0.10 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 384.05 15.07 5.79 5.79 Total: -1.00 -34.58 384.05 -9.80 -44.38 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.28 Total: 1.87 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -4.34 Total: -1.75 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -0.03 Total: -58.04 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.58 -9.80 -44.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028669939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.438 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds