Wall clock time and date at job start Sat Apr 11 2020 06:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00130 * 2 1 4 4 H 1.48507 * 109.46917 * 240.00024 * 3 2 1 5 5 H 1.48506 * 109.47058 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47521 * 119.99780 * 3 2 1 7 7 C 1.38810 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00270 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00153 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64713 * 0.02562 * 9 7 2 11 11 C 1.54324 * 107.27337 * 178.91706 * 10 9 7 12 12 C 1.55164 * 102.94332 * 337.81131 * 11 10 9 13 13 H 1.08998 * 111.00082 * 277.38468 * 12 11 10 14 14 C 1.52997 * 111.00314 * 153.57222 * 12 11 10 15 15 N 1.46505 * 109.47013 * 175.00312 * 14 12 11 16 16 C 1.34776 * 120.00181 * 180.02562 * 15 14 12 17 17 O 1.21550 * 119.99639 * 359.97438 * 16 15 14 18 18 C 1.47860 * 119.99819 * 179.97438 * 16 15 14 19 19 C 1.39615 * 120.11451 * 359.97438 * 18 16 15 20 20 C 1.37978 * 119.98781 * 180.02562 * 19 18 16 21 21 C 1.38259 * 120.21726 * 0.02562 * 20 19 18 22 22 C 1.38921 * 120.22697 * 0.02562 * 21 20 19 23 23 N 1.40209 * 119.99227 * 179.97438 * 22 21 20 24 24 C 1.35219 * 126.05712 * 5.00262 * 23 22 21 25 25 C 1.35322 * 107.71382 * 180.26319 * 24 23 22 26 26 C 1.39923 * 107.92886 * 359.58102 * 25 24 23 27 27 N 1.30879 * 108.24280 * 0.42337 * 26 25 24 28 28 C 1.38593 * 120.00682 * 0.23424 * 22 21 20 29 29 C 1.47430 * 125.65241 * 179.97438 * 9 7 2 30 30 H 0.96997 * 119.99878 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.87783 * 59.50760 * 10 9 7 32 32 H 1.08998 * 109.88315 * 298.33949 * 10 9 7 33 33 H 1.08998 * 110.72229 * 219.44709 * 11 10 9 34 34 H 1.09008 * 110.86932 * 96.23849 * 11 10 9 35 35 H 1.08993 * 109.47280 * 55.00091 * 14 12 11 36 36 H 1.08998 * 109.47078 * 294.99513 * 14 12 11 37 37 H 0.97007 * 119.99633 * 359.97438 * 15 14 12 38 38 H 1.08003 * 120.00466 * 0.02562 * 19 18 16 39 39 H 1.08004 * 119.88987 * 180.02562 * 20 19 18 40 40 H 1.08000 * 119.88518 * 179.97438 * 21 20 19 41 41 H 1.08002 * 126.13975 * 359.97438 * 24 23 22 42 42 H 1.07993 * 126.03237 * 179.73198 * 25 24 23 43 43 H 1.07999 * 125.87647 * 180.20586 * 26 25 24 44 44 H 1.08003 * 120.10949 * 179.74499 * 28 22 21 45 45 H 1.08996 * 110.36816 * 85.30890 * 29 9 7 46 46 H 1.09006 * 110.36292 * 322.98464 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4485 -4.0441 -0.0279 12 6 0.8524 -4.6561 -0.6118 13 1 0.8578 -4.5966 -1.7001 14 6 1.0370 -6.1008 -0.1435 15 7 2.2066 -6.6833 -0.8062 16 6 2.5642 -7.9564 -0.5458 17 8 1.9167 -8.6211 0.2392 18 6 3.7443 -8.5444 -1.2152 19 6 4.4894 -7.7832 -2.1177 20 6 5.5898 -8.3346 -2.7412 21 6 5.9581 -9.6406 -2.4760 22 6 5.2225 -10.4065 -1.5803 23 7 5.6001 -11.7306 -1.3153 24 6 6.7050 -12.3523 -1.7854 25 6 6.7009 -13.6177 -1.3057 26 6 5.5614 -13.7724 -0.5086 27 7 4.8994 -12.6435 -0.5166 28 6 4.1123 -9.8637 -0.9528 29 6 1.9335 -3.7312 0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.5568 -2.0520 -0.8844 32 1 -0.5550 -2.0846 0.9011 33 1 -1.2980 -4.2513 -0.6787 34 1 -0.6340 -4.4207 0.9780 35 1 0.1496 -6.6810 -0.3963 36 1 1.1860 -6.1166 0.9362 37 1 2.7231 -6.1529 -1.4330 38 1 4.2044 -6.7628 -2.3278 39 1 6.1653 -7.7442 -3.4388 40 1 6.8201 -10.0670 -2.9674 41 1 7.4536 -11.9185 -2.4318 42 1 7.4469 -14.3736 -1.5014 43 1 5.2754 -14.6702 0.0192 44 1 3.5369 -10.4590 -0.2593 45 1 2.1660 -4.0424 1.0189 46 1 2.8333 -3.7404 -0.6147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028865678.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:30 Heat of formation + Delta-G solvation = 80.257596 kcal Electronic energy + Delta-G solvation = -27728.785822 eV Core-core repulsion = 23813.072371 eV Total energy + Delta-G solvation = -3915.713452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.51512 -41.27280 -39.67689 -39.05103 -36.16570 -34.77977 -34.19208 -32.52591 -31.70721 -31.13087 -30.21005 -29.63153 -27.35809 -25.83376 -24.76626 -24.13375 -22.61581 -21.96105 -21.58068 -21.49588 -20.84975 -19.61681 -18.79011 -17.80438 -17.48638 -17.16507 -16.71984 -16.58701 -16.33156 -16.01018 -15.96035 -15.60751 -15.41584 -14.80859 -14.77359 -14.68925 -14.39869 -14.00403 -13.83921 -13.69947 -13.67652 -13.41171 -13.06350 -12.87617 -12.77106 -12.63537 -12.58798 -12.06346 -11.91974 -11.84104 -11.69430 -11.55208 -11.46417 -11.42341 -11.11077 -10.68502 -10.32269 -10.17688 -10.03736 -9.13713 -8.88569 -7.83459 -5.19058 -0.42171 -0.08472 1.09183 1.36133 1.46836 1.50128 1.56357 1.78254 1.85585 2.03824 2.50834 2.74434 3.34566 3.39125 3.60106 3.61354 3.76443 3.81679 3.90854 3.99057 4.03428 4.05040 4.08162 4.22944 4.35627 4.44368 4.61101 4.64394 4.69437 4.74417 4.80173 4.82432 4.91628 5.03542 5.04257 5.07954 5.11173 5.16145 5.22818 5.28491 5.44021 5.47000 5.55361 5.68582 5.69145 5.79011 6.15642 6.21307 6.44198 6.61971 7.08976 7.11560 7.79544 8.44030 9.26825 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.001886 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.577948 B =14842.918303 C =15738.733908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.242 4.242 8 H 0.085 0.915 9 N -0.628 5.628 10 C 0.183 3.817 11 C -0.124 4.124 12 C -0.094 4.094 13 H 0.095 0.905 14 C 0.143 3.857 15 N -0.705 5.705 16 C 0.554 3.446 17 O -0.582 6.582 18 C -0.123 4.123 19 C -0.090 4.090 20 C -0.084 4.084 21 C -0.105 4.105 22 C 0.135 3.865 23 N -0.339 5.339 24 C 0.050 3.950 25 C -0.265 4.265 26 C 0.049 3.951 27 N -0.347 5.347 28 C -0.088 4.088 29 C 0.137 3.863 30 H 0.246 0.754 31 H 0.014 0.986 32 H 0.002 0.998 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.415 0.585 38 H 0.158 0.842 39 H 0.183 0.817 40 H 0.173 0.827 41 H 0.219 0.781 42 H 0.184 0.816 43 H 0.213 0.787 44 H 0.114 0.886 45 H 0.016 0.984 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.434 -25.141 -9.999 31.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.199 1.199 5 H -0.223 1.223 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.103 0.897 9 N -0.355 5.355 10 C 0.058 3.942 11 C -0.163 4.163 12 C -0.114 4.114 13 H 0.113 0.887 14 C 0.019 3.981 15 N -0.357 5.357 16 C 0.342 3.658 17 O -0.464 6.464 18 C -0.127 4.127 19 C -0.109 4.109 20 C -0.102 4.102 21 C -0.125 4.125 22 C 0.043 3.957 23 N -0.115 5.115 24 C -0.091 4.091 25 C -0.293 4.293 26 C -0.138 4.138 27 N -0.166 5.166 28 C -0.109 4.109 29 C 0.012 3.988 30 H 0.055 0.945 31 H 0.033 0.967 32 H 0.021 0.979 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.253 0.747 38 H 0.176 0.824 39 H 0.201 0.799 40 H 0.190 0.810 41 H 0.235 0.765 42 H 0.202 0.798 43 H 0.229 0.771 44 H 0.133 0.867 45 H 0.033 0.967 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.877 -24.690 -9.027 30.206 hybrid contribution 0.571 0.837 0.149 1.024 sum 15.449 -23.853 -8.878 29.773 Atomic orbital electron populations 1.70190 1.06336 1.25268 1.58350 1.25682 0.96626 1.01141 1.02783 0.85145 0.77098 0.78763 0.78277 1.19877 1.22317 1.20549 1.19444 0.91081 0.83700 1.42845 0.89728 1.44796 1.02433 1.01218 1.87004 1.20914 0.83912 0.91693 0.97675 1.22729 0.97223 0.95078 1.01233 1.22414 0.96037 0.91931 1.00982 0.88677 1.21224 0.87990 0.92047 0.96866 1.45820 1.30976 1.12535 1.46366 1.18549 0.84278 0.81793 0.81199 1.90765 1.55887 1.62048 1.37665 1.19689 0.97267 0.94512 1.01228 1.21756 0.94661 1.00668 0.93844 1.21434 0.95803 0.93967 0.99014 1.21459 1.00380 0.94607 0.96067 1.17669 0.96891 0.81665 0.99520 1.46036 1.18761 1.08800 1.37937 1.23417 0.91213 0.94081 1.00382 1.22062 1.02767 0.98133 1.06324 1.24715 0.94040 0.96683 0.98322 1.77533 1.21908 1.01262 1.15921 1.20761 0.96081 0.94700 0.99385 1.21774 0.95462 0.84393 0.97177 0.94505 0.96738 0.97937 0.89558 0.91276 0.90657 0.92262 0.74701 0.82445 0.79948 0.80988 0.76497 0.79848 0.77094 0.86746 0.96651 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.35 10.31 21.65 0.22 -57.13 16 2 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 3 Si 0.98 45.30 29.55 68.60 2.03 47.33 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.24 -13.33 10.28 84.03 0.86 -12.46 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.63 -31.58 3.40 -692.00 -2.35 -33.93 16 10 C 0.18 8.96 5.37 86.73 0.47 9.43 16 11 C -0.12 -4.35 6.42 31.79 0.20 -4.14 16 12 C -0.09 -2.86 3.05 -9.41 -0.03 -2.89 16 13 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 14 C 0.14 3.88 5.13 86.38 0.44 4.32 16 15 N -0.71 -16.81 5.45 -465.96 -2.54 -19.35 16 16 C 0.55 15.69 7.77 86.79 0.67 16.37 16 17 O -0.58 -21.71 16.34 -3.87 -0.06 -21.78 16 18 C -0.12 -2.81 5.87 -20.10 -0.12 -2.93 16 19 C -0.09 -1.27 9.54 22.54 0.21 -1.05 16 20 C -0.08 -0.75 10.02 22.21 0.22 -0.53 16 21 C -0.10 -1.12 9.45 22.44 0.21 -0.91 16 22 C 0.13 2.66 6.67 38.05 0.25 2.91 16 23 N -0.34 -6.86 3.80 -187.86 -0.71 -7.57 16 24 C 0.05 0.61 10.79 83.50 0.90 1.51 16 25 C -0.26 -3.06 10.81 22.00 0.24 -2.82 16 26 C 0.05 0.80 12.03 85.24 1.03 1.83 16 27 N -0.35 -8.50 11.87 -56.97 -0.68 -9.17 16 28 C -0.09 -2.26 9.21 22.65 0.21 -2.05 16 29 C 0.14 5.20 6.65 86.85 0.58 5.78 16 30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.01 0.79 7.38 -2.38 -0.02 0.77 16 32 H 0.00 0.13 7.51 -2.39 -0.02 0.12 16 33 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.07 2.31 8.04 -2.38 -0.02 2.29 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.06 1.80 7.96 -2.39 -0.02 1.78 16 37 H 0.41 7.49 6.50 -92.70 -0.60 6.88 16 38 H 0.16 1.45 6.40 -2.91 -0.02 1.44 16 39 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 40 H 0.17 0.47 6.75 -2.91 -0.02 0.45 16 41 H 0.22 0.50 7.06 -2.91 -0.02 0.48 16 42 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 43 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 44 H 0.11 3.69 7.29 -2.91 -0.02 3.67 16 45 H 0.02 0.61 7.90 -2.39 -0.02 0.60 16 46 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -83.50 382.27 3.14 -80.37 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.40 Total: 12.36 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 6.82 Total: 8.88 kcal Atomic # 7 Polarization: -121.10 SS G_CDS: -6.06 Total: -127.15 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.06 Total: -21.78 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -83.50 3.14 -80.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028865678.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.624 kcal (2) G-P(sol) polarization free energy of solvation -83.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds