Wall clock time and date at job start Sat Apr 11 2020 06:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99576 * 2 1 4 4 H 1.48504 * 109.47040 * 269.99728 * 3 2 1 5 5 H 1.48497 * 109.47586 * 29.99729 * 3 2 1 6 6 H 1.48500 * 109.47412 * 149.99691 * 3 2 1 7 7 C 1.38809 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99258 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00390 * 0.02562 * 7 2 1 10 10 C 1.47557 * 125.67473 * 0.02562 * 9 7 2 11 11 C 1.55179 * 105.00533 * 203.85755 * 10 9 7 12 12 C 1.53655 * 101.41903 * 324.49905 * 11 10 9 13 13 C 1.53711 * 111.46973 * 155.06289 * 12 11 10 14 14 C 1.55184 * 101.44047 * 154.97103 * 13 12 11 15 15 N 1.47561 * 105.00747 * 324.53129 * 14 13 12 16 16 C 1.34779 * 125.67544 * 203.83559 * 15 14 13 17 17 O 1.21775 * 120.00077 * 174.42228 * 16 15 14 18 18 C 1.41816 * 119.99856 * 354.42914 * 16 15 14 19 19 C 1.38526 * 126.78616 * 352.65372 * 18 16 15 20 20 N 1.32327 * 108.21037 * 179.83150 * 19 18 16 21 21 C 1.33199 * 109.81745 * 0.44750 * 20 19 18 22 22 C 1.40652 * 131.81696 * 179.71663 * 21 20 19 23 23 C 1.36286 * 119.38302 * 180.02562 * 22 21 20 24 24 C 1.40173 * 119.60983 * 0.02562 * 23 22 21 25 25 C 1.35261 * 120.12525 * 359.96126 * 24 23 22 26 26 N 1.35951 * 120.63674 * 0.07396 * 25 24 23 27 27 C 1.47403 * 108.65401 * 23.86432 * 15 14 13 28 28 C 1.47405 * 125.67074 * 179.97438 * 9 7 2 29 29 H 0.96999 * 120.00038 * 0.02562 * 1 2 3 30 30 H 1.09001 * 110.33404 * 322.73928 * 10 9 7 31 31 H 1.08998 * 110.33459 * 84.86586 * 10 9 7 32 32 H 1.09002 * 111.03465 * 206.46591 * 11 10 9 33 33 H 1.09000 * 111.03860 * 82.53578 * 11 10 9 34 34 H 1.08992 * 111.00769 * 36.93841 * 13 12 11 35 35 H 1.08998 * 111.07788 * 273.03073 * 13 12 11 36 36 H 1.08996 * 110.33655 * 205.64829 * 14 13 12 37 37 H 1.09009 * 110.42568 * 83.45783 * 14 13 12 38 38 H 1.07996 * 125.89126 * 359.97438 * 19 18 16 39 39 H 1.08001 * 120.31060 * 0.02845 * 22 21 20 40 40 H 1.08009 * 120.19698 * 180.02562 * 23 22 21 41 41 H 1.07996 * 119.93480 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.67920 * 180.02562 * 25 24 23 43 43 H 1.08990 * 109.98741 * 117.22781 * 27 15 14 44 44 H 1.08996 * 109.98188 * 238.49549 * 27 15 14 45 45 H 1.08995 * 109.98422 * 58.55740 * 28 9 7 46 46 H 1.08992 * 109.99018 * 297.24339 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1427 -2.5340 -0.0005 11 6 -0.4073 -3.9376 0.6061 12 6 0.7836 -4.7368 0.0548 13 6 1.1157 -5.9413 0.9501 14 6 1.8089 -6.8938 -0.0600 15 7 1.0966 -6.6828 -1.3349 16 6 1.0244 -7.5659 -2.3505 17 8 0.3233 -7.3264 -3.3170 18 6 1.7646 -8.7742 -2.2934 19 6 2.7068 -9.1256 -1.3407 20 7 3.1655 -10.3308 -1.6375 21 6 2.5747 -10.7789 -2.7440 22 6 2.7162 -11.9800 -3.4620 23 6 1.9703 -12.1796 -4.5850 24 6 1.0753 -11.1870 -5.0074 25 6 0.9532 -10.0387 -4.3032 26 7 1.6941 -9.8314 -3.1823 27 6 0.4777 -5.3451 -1.3134 28 6 1.9330 -3.7312 0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6005 -1.7618 0.6176 31 1 -0.5278 -2.4810 -1.0188 32 1 -1.3522 -4.3466 0.2484 33 1 -0.3850 -3.9036 1.6954 34 1 0.2081 -6.3911 1.3524 35 1 1.7977 -5.6576 1.7517 36 1 1.7064 -7.9294 0.2642 37 1 2.8621 -6.6337 -0.1670 38 1 3.0124 -8.5212 -0.4994 39 1 3.4096 -12.7371 -3.1266 40 1 2.0682 -13.0973 -5.1462 41 1 0.4819 -11.3395 -5.8968 42 1 0.2611 -9.2789 -4.6349 43 1 0.9047 -4.7244 -2.1010 44 1 -0.6002 -5.4312 -1.4503 45 1 2.5734 -3.8504 0.8745 46 1 2.5138 -3.8775 -0.9101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041425913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:45 Heat of formation + Delta-G solvation = 105.898664 kcal Electronic energy + Delta-G solvation = -29366.708154 eV Core-core repulsion = 25452.106583 eV Total energy + Delta-G solvation = -3914.601572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.22806 -40.30068 -38.40415 -37.71472 -35.77223 -33.93075 -32.88107 -31.01166 -30.58854 -29.73145 -29.28400 -27.83671 -25.84488 -24.80615 -24.22726 -23.09255 -22.88978 -21.97290 -20.32272 -20.12067 -18.91047 -17.54540 -17.30495 -17.03377 -16.72596 -16.58502 -15.89596 -15.80270 -15.29872 -14.89015 -14.77275 -14.39847 -14.16267 -13.83320 -13.44022 -13.35517 -12.96787 -12.79814 -12.45303 -12.30809 -12.24779 -12.16452 -11.99443 -11.50186 -11.47282 -11.35737 -11.19405 -10.89965 -10.81233 -10.66279 -10.24837 -10.06405 -10.00691 -9.90838 -9.78696 -9.50558 -9.25859 -8.72519 -8.62659 -8.17738 -6.83973 -5.65513 -3.07078 0.35283 0.49938 1.98744 2.06950 3.10617 3.12661 3.24534 3.40212 3.45196 3.46968 3.79620 4.12721 4.34320 4.44788 4.47483 4.56833 4.61362 4.69609 4.88026 4.91839 4.99548 5.10564 5.26611 5.35368 5.40479 5.42109 5.50675 5.56708 5.71036 5.75814 5.77903 5.93648 5.98950 6.03714 6.10005 6.14744 6.22701 6.28017 6.32739 6.52746 6.59711 6.60528 6.72038 6.80332 7.37477 7.46188 7.51329 7.61798 7.85077 8.07254 8.35306 9.21518 9.82238 10.47074 11.38470 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025003 B = 0.002350 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.580182 B =11911.387865 C =12064.085728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.151 3.849 11 C -0.130 4.130 12 C -0.082 4.082 13 C -0.117 4.117 14 C 0.085 3.915 15 N -0.604 5.604 16 C 0.609 3.391 17 O -0.558 6.558 18 C -0.136 4.136 19 C 0.095 3.905 20 N -0.497 5.497 21 C 0.241 3.759 22 C -0.091 4.091 23 C -0.087 4.087 24 C -0.148 4.148 25 C 0.077 3.923 26 N -0.323 5.323 27 C 0.133 3.867 28 C 0.151 3.849 29 H 0.252 0.748 30 H 0.106 0.894 31 H 0.013 0.987 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.202 0.798 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.156 0.844 42 H 0.177 0.823 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.029 0.971 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.961 -25.114 -4.412 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.169 4.169 12 C -0.083 4.083 13 C -0.155 4.155 14 C -0.037 4.037 15 N -0.336 5.336 16 C 0.400 3.600 17 O -0.439 6.439 18 C -0.250 4.250 19 C -0.065 4.065 20 N -0.215 5.215 21 C 0.001 3.999 22 C -0.112 4.112 23 C -0.111 4.111 24 C -0.168 4.168 25 C -0.047 4.047 26 N 0.007 4.993 27 C 0.012 3.988 28 C 0.025 3.975 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.031 0.969 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.219 0.781 39 H 0.173 0.827 40 H 0.165 0.835 41 H 0.173 0.827 42 H 0.194 0.806 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.047 0.953 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.099 -25.156 -4.545 25.649 hybrid contribution -0.084 1.315 -0.602 1.449 sum 2.015 -23.841 -5.146 24.473 Atomic orbital electron populations 1.69800 1.04872 1.24771 1.57627 1.24783 0.95730 0.97707 1.02469 0.86078 0.78517 0.83375 0.77560 1.21674 1.21667 1.20708 1.19064 0.90481 0.82439 1.43028 0.90518 1.44632 1.01872 0.99611 1.86916 1.22000 0.84621 0.92403 0.98313 1.22875 0.94924 0.98765 1.00342 1.21572 0.98870 0.94684 0.93182 1.22700 1.01012 0.94799 0.96984 1.22887 0.96864 1.00354 0.83634 1.48253 1.52686 1.16842 1.15851 1.14947 0.81203 0.81531 0.82309 1.90811 1.42292 1.78007 1.32776 1.19795 1.12356 0.94090 0.98781 1.23920 0.92328 0.92523 0.97741 1.70560 1.26835 1.11919 1.12234 1.21161 0.92139 0.92179 0.94457 1.20348 1.01793 0.94099 0.94912 1.21181 0.94628 0.99641 0.95648 1.20971 1.01501 0.92743 1.01627 1.22115 0.96384 1.00107 0.86111 1.42418 1.26099 1.13641 1.17105 1.21901 0.98172 0.80787 0.97980 1.21159 0.92720 0.85544 0.98101 0.93737 0.87629 0.96932 0.92036 0.91452 0.90420 0.89168 0.90012 0.90442 0.78125 0.82684 0.83545 0.82650 0.80555 0.90619 0.91040 0.95314 0.95993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.71 10.09 55.49 0.56 -26.15 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.22 -6.11 10.28 -15.06 -0.15 -6.27 16 8 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 9 N -0.60 -15.10 3.41 -170.41 -0.58 -15.68 16 10 C 0.15 3.58 5.85 -2.31 -0.01 3.56 16 11 C -0.13 -2.32 6.04 -25.24 -0.15 -2.47 16 12 C -0.08 -1.32 0.60 -153.98 -0.09 -1.42 16 13 C -0.12 -1.41 6.04 -25.21 -0.15 -1.56 16 14 C 0.09 0.95 5.03 -2.30 -0.01 0.94 16 15 N -0.60 -8.78 3.34 -174.18 -0.58 -9.36 16 16 C 0.61 9.61 7.64 -14.89 -0.11 9.50 16 17 O -0.56 -10.31 15.71 5.12 0.08 -10.23 16 18 C -0.14 -1.90 6.77 -83.47 -0.56 -2.46 16 19 C 0.09 1.16 10.11 -17.23 -0.17 0.99 16 20 N -0.50 -6.46 11.25 -12.27 -0.14 -6.60 16 21 C 0.24 2.87 7.77 -156.07 -1.21 1.65 16 22 C -0.09 -0.74 10.10 -39.37 -0.40 -1.14 16 23 C -0.09 -0.52 10.07 -39.56 -0.40 -0.92 16 24 C -0.15 -1.01 10.00 -39.92 -0.40 -1.41 16 25 C 0.08 0.80 10.51 -16.79 -0.18 0.63 16 26 N -0.32 -4.11 2.96 -60.14 -0.18 -4.29 16 27 C 0.13 2.19 6.03 -3.64 -0.02 2.17 16 28 C 0.15 2.98 6.40 -3.64 -0.02 2.96 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.11 2.82 5.89 -51.93 -0.31 2.52 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.99 7.62 -51.93 -0.40 0.60 16 33 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 34 H 0.08 0.86 8.07 -51.93 -0.42 0.45 16 35 H 0.09 1.00 7.63 -51.93 -0.40 0.61 16 36 H 0.08 0.75 5.94 -51.93 -0.31 0.44 16 37 H 0.08 0.79 7.66 -51.92 -0.40 0.39 16 38 H 0.20 1.91 4.67 -52.49 -0.25 1.66 16 39 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.15 0.37 8.06 -52.48 -0.42 -0.05 16 41 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.18 1.91 6.83 -52.49 -0.36 1.55 16 43 H 0.08 1.42 7.60 -51.93 -0.39 1.03 16 44 H 0.07 1.20 7.53 -51.93 -0.39 0.81 16 45 H 0.03 0.55 7.53 -51.93 -0.39 0.16 16 46 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -34.47 363.45 -10.59 -45.07 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.05 Total: 0.42 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -4.15 Total: 4.34 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.92 Total: -62.09 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.47 -10.59 -45.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041425913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.967 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds