Wall clock time and date at job start Sat Apr 11 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99854 * 2 1 4 4 H 1.48502 * 109.47322 * 270.00368 * 3 2 1 5 5 H 1.48499 * 109.46928 * 30.00354 * 3 2 1 6 6 H 1.48504 * 109.46850 * 150.00194 * 3 2 1 7 7 C 1.38811 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99941 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.47156 * 125.60101 * 359.97438 * 9 7 2 11 11 C 1.54623 * 107.34313 * 179.10646 * 10 9 7 12 12 C 1.53472 * 102.74580 * 339.34384 * 11 10 9 13 13 C 1.53491 * 111.80845 * 154.35693 * 12 11 10 14 14 C 1.55434 * 101.30166 * 88.09568 * 13 12 11 15 15 N 1.47575 * 104.91842 * 35.61731 * 14 13 12 16 16 C 1.34775 * 125.67551 * 156.11864 * 15 14 13 17 17 O 1.21654 * 119.99990 * 176.81047 * 16 15 14 18 18 C 1.47054 * 119.99850 * 357.08423 * 16 15 14 19 19 C 1.37598 * 119.93060 * 23.52165 * 18 16 15 20 20 C 1.39948 * 120.01500 * 179.80806 * 19 18 16 21 21 C 1.36211 * 119.91817 * 0.44315 * 20 19 18 22 22 C 1.40920 * 119.79873 * 359.79006 * 21 20 19 23 23 N 1.32582 * 132.18994 * 179.97438 * 22 21 20 24 24 C 1.33235 * 109.14040 * 180.02562 * 23 22 21 25 25 C 1.35451 * 108.57734 * 359.97438 * 24 23 22 26 26 N 1.36245 * 107.18292 * 0.02562 * 25 24 23 27 27 C 1.47449 * 108.64942 * 335.85553 * 15 14 13 28 28 C 1.47757 * 125.59725 * 180.02562 * 9 7 2 29 29 H 0.96999 * 120.00548 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.86712 * 59.66121 * 10 9 7 31 31 H 1.09000 * 109.98416 * 298.61064 * 10 9 7 32 32 H 1.08997 * 110.75373 * 221.03417 * 11 10 9 33 33 H 1.08993 * 110.91674 * 97.73139 * 11 10 9 34 34 H 1.09006 * 111.04032 * 206.29081 * 13 12 11 35 35 H 1.08997 * 111.04040 * 330.19088 * 13 12 11 36 36 H 1.09001 * 110.45388 * 276.72545 * 14 13 12 37 37 H 1.09002 * 110.30566 * 154.43562 * 14 13 12 38 38 H 1.08000 * 119.99751 * 359.97438 * 19 18 16 39 39 H 1.08001 * 120.04050 * 180.24642 * 20 19 18 40 40 H 1.07995 * 120.09963 * 179.76311 * 21 20 19 41 41 H 1.07997 * 125.70668 * 180.02562 * 24 23 22 42 42 H 1.08003 * 126.40979 * 180.02562 * 25 24 23 43 43 H 1.08997 * 109.99899 * 121.77522 * 27 15 14 44 44 H 1.08997 * 109.99299 * 243.06680 * 27 15 14 45 45 H 1.08995 * 110.39314 * 83.51924 * 28 9 7 46 46 H 1.09002 * 110.39483 * 321.11973 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1390 -2.5317 0.0005 11 6 -0.4537 -4.0454 -0.0229 12 6 0.8475 -4.6534 -0.5637 13 6 1.0308 -6.1071 -0.1064 14 6 0.2821 -6.8767 -1.2303 15 7 0.5512 -6.1083 -2.4612 16 6 0.5090 -6.5956 -3.7170 17 8 0.6929 -5.8541 -4.6638 18 6 0.2346 -8.0225 -3.9431 19 6 -0.4381 -8.7518 -2.9897 20 6 -0.7037 -10.1089 -3.2048 21 6 -0.2876 -10.7087 -4.3548 22 6 0.4051 -9.9576 -5.3254 23 7 0.9124 -10.2814 -6.5067 24 6 1.4786 -9.2042 -7.0491 25 6 1.3308 -8.1630 -6.1954 26 7 0.6561 -8.6276 -5.1068 27 6 0.8677 -4.7172 -2.0888 28 6 1.9360 -3.7336 -0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5589 -2.0522 -0.8837 31 1 -0.5569 -2.0803 0.9003 32 1 -1.2866 -4.2564 -0.6936 33 1 -0.6647 -4.4146 0.9806 34 1 2.0862 -6.3783 -0.0780 35 1 0.5598 -6.2751 0.8620 36 1 -0.7883 -6.9025 -1.0264 37 1 0.6755 -7.8891 -1.3222 38 1 -0.7635 -8.2763 -2.0763 39 1 -1.2351 -10.6808 -2.4585 40 1 -0.4877 -11.7566 -4.5222 41 1 1.9720 -9.1672 -8.0091 42 1 1.6821 -7.1533 -6.3490 43 1 1.8565 -4.4477 -2.4601 44 1 0.1183 -4.0414 -2.5008 45 1 2.1979 -4.0319 1.0146 46 1 2.8172 -3.7510 -0.6418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041470633.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:53 Heat of formation + Delta-G solvation = 112.425018 kcal Electronic energy + Delta-G solvation = -29585.566036 eV Core-core repulsion = 25671.247469 eV Total energy + Delta-G solvation = -3914.318568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.08106 -40.61363 -38.68833 -37.41175 -35.92714 -33.81268 -32.94683 -31.07991 -30.59670 -29.24632 -29.09864 -28.32679 -26.19589 -25.00456 -23.75266 -23.16157 -22.48213 -22.26961 -20.33076 -19.93383 -19.05719 -17.95648 -17.63463 -16.87242 -16.71940 -16.29781 -16.02160 -15.80706 -15.35658 -14.86057 -14.57125 -14.20999 -14.07583 -13.87030 -13.80992 -13.31300 -13.16878 -13.04625 -12.63856 -12.53969 -12.15864 -12.11329 -11.95036 -11.70861 -11.41184 -11.33806 -11.28945 -10.93845 -10.82292 -10.47083 -10.32436 -10.24646 -10.10925 -9.98751 -9.88025 -9.68420 -9.10858 -8.85730 -8.63949 -8.12024 -6.88987 -5.75538 -3.09351 0.00479 0.98268 1.97748 2.30629 2.83236 2.85259 3.24291 3.38142 3.43295 3.44853 3.84615 3.98207 4.24479 4.33449 4.44103 4.49174 4.63144 4.73318 4.77634 5.07100 5.11525 5.11899 5.19784 5.27793 5.30181 5.44136 5.46046 5.63405 5.67223 5.71204 5.74328 5.78313 5.83993 5.95724 6.03598 6.09470 6.13123 6.21584 6.38610 6.40398 6.42917 6.60610 6.67659 6.70359 7.21562 7.50494 7.54259 7.59679 7.77345 7.78760 8.20294 9.17270 9.77232 10.41954 11.36122 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021843 B = 0.002590 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.574087 B =10807.100080 C =11612.807593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.177 3.823 11 C -0.132 4.132 12 C -0.084 4.084 13 C -0.118 4.118 14 C 0.083 3.917 15 N -0.600 5.600 16 C 0.570 3.430 17 O -0.526 6.526 18 C 0.044 3.956 19 C -0.109 4.109 20 C -0.118 4.118 21 C -0.050 4.050 22 C 0.202 3.798 23 N -0.485 5.485 24 C 0.024 3.976 25 C -0.066 4.066 26 N -0.336 5.336 27 C 0.135 3.865 28 C 0.151 3.849 29 H 0.252 0.748 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.172 0.828 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.184 0.816 42 H 0.190 0.810 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.026 0.974 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.055 -22.157 -3.071 22.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.170 4.170 12 C -0.085 4.085 13 C -0.156 4.156 14 C -0.039 4.039 15 N -0.333 5.333 16 C 0.357 3.643 17 O -0.403 6.403 18 C -0.062 4.062 19 C -0.131 4.131 20 C -0.142 4.142 21 C -0.070 4.070 22 C -0.040 4.040 23 N -0.205 5.205 24 C -0.128 4.128 25 C -0.200 4.200 26 N -0.008 5.008 27 C 0.014 3.986 28 C 0.025 3.975 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.188 0.812 39 H 0.168 0.832 40 H 0.172 0.828 41 H 0.201 0.799 42 H 0.207 0.793 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.044 0.956 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.006 -22.233 -4.034 22.685 hybrid contribution 0.428 1.795 0.265 1.864 sum -1.578 -20.438 -3.769 20.843 Atomic orbital electron populations 1.69947 1.04882 1.25091 1.56987 1.24790 0.95716 0.97684 1.02132 0.86129 0.78583 0.83490 0.77615 1.21571 1.21672 1.20697 1.19037 0.90425 0.82348 1.43957 0.90446 1.44578 1.01546 0.99728 1.87341 1.21228 0.84307 0.87958 1.01226 1.22777 0.94761 0.99777 0.99669 1.21616 0.99376 0.94478 0.93077 1.22682 1.01013 0.94293 0.97642 1.23013 1.00393 0.96124 0.84381 1.48499 1.67492 1.12838 1.04487 1.17102 0.78848 0.85708 0.82605 1.90866 1.49978 1.58912 1.40537 1.20067 1.04562 0.93957 0.87618 1.22126 0.97343 0.94784 0.98819 1.20994 1.01070 0.94244 0.97876 1.20454 0.95363 1.00383 0.90832 1.21026 1.05107 0.81719 0.96137 1.70649 1.15815 1.28804 1.05211 1.22595 1.01758 0.87887 1.00563 1.23072 1.06160 1.02717 0.88040 1.42562 1.35284 1.10531 1.12463 1.21857 1.02200 0.79958 0.94588 1.21298 0.93330 0.85760 0.97135 0.93729 0.93584 0.93794 0.92116 0.91818 0.90264 0.89185 0.90147 0.89719 0.81153 0.83169 0.82783 0.79884 0.79296 0.90622 0.90216 0.95611 0.94141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.30 55.49 0.57 -25.96 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.23 -6.21 10.28 -15.06 -0.15 -6.36 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.61 -14.58 3.41 -170.55 -0.58 -15.16 16 10 C 0.18 4.03 5.36 -2.83 -0.02 4.02 16 11 C -0.13 -2.13 5.79 -25.63 -0.15 -2.28 16 12 C -0.08 -1.24 0.61 -154.07 -0.09 -1.34 16 13 C -0.12 -1.21 6.07 -25.18 -0.15 -1.36 16 14 C 0.08 0.74 4.96 -2.16 -0.01 0.73 16 15 N -0.60 -7.82 3.34 -172.14 -0.58 -8.40 16 16 C 0.57 8.32 7.63 -12.69 -0.10 8.23 16 17 O -0.53 -9.53 15.45 5.23 0.08 -9.45 16 18 C 0.04 0.54 6.66 -81.86 -0.54 0.00 16 19 C -0.11 -0.92 7.98 -39.17 -0.31 -1.23 16 20 C -0.12 -0.79 10.04 -39.67 -0.40 -1.19 16 21 C -0.05 -0.43 10.09 -39.30 -0.40 -0.83 16 22 C 0.20 2.52 7.80 -156.01 -1.22 1.30 16 23 N -0.48 -6.54 11.31 -12.76 -0.14 -6.69 16 24 C 0.02 0.29 11.83 -17.94 -0.21 0.08 16 25 C -0.07 -0.87 10.83 -16.59 -0.18 -1.05 16 26 N -0.34 -4.48 2.97 -58.74 -0.17 -4.65 16 27 C 0.13 2.13 6.07 -3.70 -0.02 2.11 16 28 C 0.15 2.82 6.26 -3.23 -0.02 2.80 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.05 1.19 7.39 -51.93 -0.38 0.80 16 31 H 0.04 1.12 7.49 -51.93 -0.39 0.73 16 32 H 0.06 0.91 7.94 -51.93 -0.41 0.50 16 33 H 0.06 0.93 7.80 -51.93 -0.40 0.52 16 34 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 35 H 0.09 0.78 7.76 -51.93 -0.40 0.38 16 36 H 0.08 0.58 7.31 -51.93 -0.38 0.20 16 37 H 0.08 0.58 6.04 -51.93 -0.31 0.27 16 38 H 0.17 1.04 4.13 -52.49 -0.22 0.82 16 39 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 40 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.18 1.56 8.06 -52.49 -0.42 1.13 16 42 H 0.19 2.46 6.99 -52.48 -0.37 2.10 16 43 H 0.08 1.31 7.59 -51.93 -0.39 0.91 16 44 H 0.08 1.44 7.78 -51.93 -0.40 1.04 16 45 H 0.03 0.47 8.05 -51.93 -0.42 0.05 16 46 H 0.04 0.76 7.67 -51.93 -0.40 0.36 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -34.36 363.73 -10.56 -44.92 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.12 Total: -0.27 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -4.07 Total: 3.34 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -0.90 Total: -60.87 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.36 -10.56 -44.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041470633.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.345 kcal (2) G-P(sol) polarization free energy of solvation -34.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds