Wall clock time and date at job start Sat Apr 11 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99854 * 2 1 4 4 H 1.48502 * 109.47322 * 270.00368 * 3 2 1 5 5 H 1.48499 * 109.46928 * 30.00354 * 3 2 1 6 6 H 1.48504 * 109.46850 * 150.00194 * 3 2 1 7 7 C 1.38811 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99941 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.47156 * 125.60101 * 359.97438 * 9 7 2 11 11 C 1.54623 * 107.34313 * 179.10646 * 10 9 7 12 12 C 1.53472 * 102.74580 * 339.34384 * 11 10 9 13 13 C 1.53491 * 111.80845 * 154.35693 * 12 11 10 14 14 C 1.55434 * 101.30166 * 88.09568 * 13 12 11 15 15 N 1.47575 * 104.91842 * 35.61731 * 14 13 12 16 16 C 1.34775 * 125.67551 * 156.11864 * 15 14 13 17 17 O 1.21654 * 119.99990 * 176.81047 * 16 15 14 18 18 C 1.47054 * 119.99850 * 357.08423 * 16 15 14 19 19 C 1.37598 * 119.93060 * 23.52165 * 18 16 15 20 20 C 1.39948 * 120.01500 * 179.80806 * 19 18 16 21 21 C 1.36211 * 119.91817 * 0.44315 * 20 19 18 22 22 C 1.40920 * 119.79873 * 359.79006 * 21 20 19 23 23 N 1.32582 * 132.18994 * 179.97438 * 22 21 20 24 24 C 1.33235 * 109.14040 * 180.02562 * 23 22 21 25 25 C 1.35451 * 108.57734 * 359.97438 * 24 23 22 26 26 N 1.36245 * 107.18292 * 0.02562 * 25 24 23 27 27 C 1.47449 * 108.64942 * 335.85553 * 15 14 13 28 28 C 1.47757 * 125.59725 * 180.02562 * 9 7 2 29 29 H 0.96999 * 120.00548 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.86712 * 59.66121 * 10 9 7 31 31 H 1.09000 * 109.98416 * 298.61064 * 10 9 7 32 32 H 1.08997 * 110.75373 * 221.03417 * 11 10 9 33 33 H 1.08993 * 110.91674 * 97.73139 * 11 10 9 34 34 H 1.09006 * 111.04032 * 206.29081 * 13 12 11 35 35 H 1.08997 * 111.04040 * 330.19088 * 13 12 11 36 36 H 1.09001 * 110.45388 * 276.72545 * 14 13 12 37 37 H 1.09002 * 110.30566 * 154.43562 * 14 13 12 38 38 H 1.08000 * 119.99751 * 359.97438 * 19 18 16 39 39 H 1.08001 * 120.04050 * 180.24642 * 20 19 18 40 40 H 1.07995 * 120.09963 * 179.76311 * 21 20 19 41 41 H 1.07997 * 125.70668 * 180.02562 * 24 23 22 42 42 H 1.08003 * 126.40979 * 180.02562 * 25 24 23 43 43 H 1.08997 * 109.99899 * 121.77522 * 27 15 14 44 44 H 1.08997 * 109.99299 * 243.06680 * 27 15 14 45 45 H 1.08995 * 110.39314 * 83.51924 * 28 9 7 46 46 H 1.09002 * 110.39483 * 321.11973 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1390 -2.5317 0.0005 11 6 -0.4537 -4.0454 -0.0229 12 6 0.8475 -4.6534 -0.5637 13 6 1.0308 -6.1071 -0.1064 14 6 0.2821 -6.8767 -1.2303 15 7 0.5512 -6.1083 -2.4612 16 6 0.5090 -6.5956 -3.7170 17 8 0.6929 -5.8541 -4.6638 18 6 0.2346 -8.0225 -3.9431 19 6 -0.4381 -8.7518 -2.9897 20 6 -0.7037 -10.1089 -3.2048 21 6 -0.2876 -10.7087 -4.3548 22 6 0.4051 -9.9576 -5.3254 23 7 0.9124 -10.2814 -6.5067 24 6 1.4786 -9.2042 -7.0491 25 6 1.3308 -8.1630 -6.1954 26 7 0.6561 -8.6276 -5.1068 27 6 0.8677 -4.7172 -2.0888 28 6 1.9360 -3.7336 -0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5589 -2.0522 -0.8837 31 1 -0.5569 -2.0803 0.9003 32 1 -1.2866 -4.2564 -0.6936 33 1 -0.6647 -4.4146 0.9806 34 1 2.0862 -6.3783 -0.0780 35 1 0.5598 -6.2751 0.8620 36 1 -0.7883 -6.9025 -1.0264 37 1 0.6755 -7.8891 -1.3222 38 1 -0.7635 -8.2763 -2.0763 39 1 -1.2351 -10.6808 -2.4585 40 1 -0.4877 -11.7566 -4.5222 41 1 1.9720 -9.1672 -8.0091 42 1 1.6821 -7.1533 -6.3490 43 1 1.8565 -4.4477 -2.4601 44 1 0.1183 -4.0414 -2.5008 45 1 2.1979 -4.0319 1.0146 46 1 2.8172 -3.7510 -0.6418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041470633.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:51 Heat of formation + Delta-G solvation = 90.443296 kcal Electronic energy + Delta-G solvation = -29586.519235 eV Core-core repulsion = 25671.247469 eV Total energy + Delta-G solvation = -3915.271767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.92366 -41.71592 -39.93573 -38.23151 -37.33022 -34.64692 -34.58996 -32.49759 -31.54918 -30.68399 -30.08042 -29.56107 -27.54303 -26.40161 -25.03444 -24.00317 -23.44377 -23.15040 -22.13012 -20.91576 -20.30924 -18.95203 -18.75839 -18.37077 -17.69058 -17.28891 -16.82581 -16.80279 -16.64387 -16.32184 -15.96064 -15.62791 -15.17942 -15.09341 -14.70671 -14.56299 -14.39567 -14.06750 -13.85662 -13.62787 -13.32254 -13.25488 -13.02012 -12.93352 -12.85638 -12.82357 -12.50402 -12.39019 -12.07489 -12.03708 -11.85599 -11.57026 -11.43126 -11.41590 -11.23165 -11.18613 -10.70849 -9.94901 -9.92775 -8.95579 -8.88551 -7.86115 -5.20358 -0.75992 0.24187 1.06937 1.37588 1.43189 1.44940 1.53088 1.88290 1.90742 2.46479 2.47901 2.99277 3.25159 3.32098 3.43664 3.50101 3.58461 3.61686 3.77205 3.84558 4.03490 4.18776 4.24388 4.35276 4.37498 4.39129 4.49221 4.51871 4.61614 4.68655 4.78018 4.81962 4.87539 4.93965 4.95742 4.99293 5.04454 5.07461 5.16121 5.28882 5.35128 5.42938 5.45142 5.55002 5.69736 5.79625 5.86780 6.19818 6.22156 6.70779 6.74233 7.10647 7.78295 8.41080 9.23853 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021843 B = 0.002590 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.574087 B =10807.100080 C =11612.807593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.973 3.027 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.111 4.111 12 C -0.071 4.071 13 C -0.106 4.106 14 C 0.077 3.923 15 N -0.596 5.596 16 C 0.565 3.435 17 O -0.581 6.581 18 C 0.003 3.997 19 C -0.076 4.076 20 C -0.095 4.095 21 C -0.055 4.055 22 C 0.189 3.811 23 N -0.515 5.515 24 C 0.025 3.975 25 C -0.101 4.101 26 N -0.345 5.345 27 C 0.141 3.859 28 C 0.145 3.855 29 H 0.245 0.755 30 H -0.001 1.001 31 H 0.008 0.992 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.203 0.797 39 H 0.206 0.794 40 H 0.183 0.817 41 H 0.207 0.793 42 H 0.175 0.825 43 H 0.048 0.952 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.915 -26.459 -0.441 26.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.802 3.198 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.368 4.368 8 H 0.098 0.902 9 N -0.355 5.355 10 C 0.058 3.942 11 C -0.149 4.149 12 C -0.073 4.073 13 C -0.144 4.144 14 C -0.043 4.043 15 N -0.328 5.328 16 C 0.354 3.646 17 O -0.462 6.462 18 C -0.103 4.103 19 C -0.097 4.097 20 C -0.118 4.118 21 C -0.075 4.075 22 C -0.053 4.053 23 N -0.236 5.236 24 C -0.127 4.127 25 C -0.234 4.234 26 N -0.017 5.017 27 C 0.018 3.982 28 C 0.020 3.980 29 H 0.054 0.946 30 H 0.017 0.983 31 H 0.026 0.974 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.220 0.780 39 H 0.223 0.777 40 H 0.200 0.800 41 H 0.224 0.776 42 H 0.192 0.808 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.845 -26.587 -1.362 26.774 hybrid contribution 0.689 3.081 -0.507 3.198 sum -2.156 -23.506 -1.869 23.679 Atomic orbital electron populations 1.70177 1.06173 1.25078 1.58525 1.25593 0.96585 1.00878 1.02922 0.85155 0.77865 0.79568 0.77243 1.21876 1.21981 1.19191 1.19427 0.90926 0.83938 1.42531 0.90211 1.44895 1.02484 1.01073 1.87053 1.20991 0.83524 0.92418 0.97303 1.22614 0.95802 0.94484 1.02009 1.21444 0.96865 0.97140 0.91847 1.22731 1.02413 0.89742 0.99491 1.23462 1.02525 0.96825 0.81505 1.48485 1.66824 1.11898 1.05555 1.17599 0.77933 0.86768 0.82309 1.90832 1.52525 1.60511 1.42361 1.20024 1.08286 0.92955 0.89042 1.22684 0.93608 0.95362 0.98077 1.21612 0.99109 0.93315 0.97777 1.21020 0.94432 1.01604 0.90471 1.21798 1.05116 0.81748 0.96643 1.70638 1.17314 1.29331 1.06335 1.22974 1.01241 0.87308 1.01160 1.23017 1.08334 1.02655 0.89430 1.42659 1.35387 1.10981 1.12680 1.21523 0.99622 0.81533 0.95488 1.21538 0.94247 0.84069 0.98104 0.94561 0.98270 0.97352 0.90656 0.88583 0.89423 0.85823 0.86812 0.86387 0.78035 0.77749 0.79964 0.77627 0.80816 0.93338 0.93703 0.93707 0.94857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.50 10.30 21.65 0.22 -57.28 16 2 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 3 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 4 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.24 -13.34 10.28 84.03 0.86 -12.48 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 9 N -0.63 -31.15 3.41 -693.49 -2.36 -33.51 16 10 C 0.18 8.61 5.36 86.81 0.47 9.08 16 11 C -0.11 -3.39 5.79 31.31 0.18 -3.21 16 12 C -0.07 -1.98 0.61 -51.89 -0.03 -2.01 16 13 C -0.11 -1.61 6.07 31.60 0.19 -1.42 16 14 C 0.08 0.95 4.96 87.01 0.43 1.38 16 15 N -0.60 -14.64 3.34 -816.77 -2.73 -17.37 16 16 C 0.56 16.57 7.63 86.56 0.66 17.23 16 17 O -0.58 -22.76 15.45 -4.20 -0.06 -22.82 16 18 C 0.00 0.06 6.66 40.37 0.27 0.33 16 19 C -0.08 -0.88 7.98 22.53 0.18 -0.70 16 20 C -0.10 -0.65 10.04 22.21 0.22 -0.43 16 21 C -0.06 -0.71 10.09 22.45 0.23 -0.49 16 22 C 0.19 4.44 7.80 134.09 1.05 5.48 16 23 N -0.52 -13.78 11.31 -194.27 -2.20 -15.98 16 24 C 0.03 0.63 11.83 83.84 0.99 1.62 16 25 C -0.10 -2.86 10.83 83.36 0.90 -1.95 16 26 N -0.35 -9.14 2.97 -339.77 -1.01 -10.15 16 27 C 0.14 4.54 6.07 86.08 0.52 5.06 16 28 C 0.15 5.34 6.26 86.22 0.54 5.88 16 29 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.00 -0.05 7.39 -2.39 -0.02 -0.07 16 31 H 0.01 0.44 7.49 -2.39 -0.02 0.42 16 32 H 0.07 2.11 7.94 -2.39 -0.02 2.09 16 33 H 0.10 2.38 7.80 -2.39 -0.02 2.36 16 34 H 0.09 1.28 8.09 -2.38 -0.02 1.26 16 35 H 0.12 1.20 7.76 -2.39 -0.02 1.18 16 36 H 0.11 0.77 7.31 -2.39 -0.02 0.76 16 37 H 0.12 0.78 6.04 -2.39 -0.01 0.76 16 38 H 0.20 0.94 4.13 -2.91 -0.01 0.93 16 39 H 0.21 -0.68 8.06 -2.91 -0.02 -0.71 16 40 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 41 H 0.21 3.69 8.06 -2.91 -0.02 3.66 16 42 H 0.17 5.23 6.99 -2.91 -0.02 5.21 16 43 H 0.05 1.80 7.59 -2.39 -0.02 1.78 16 44 H 0.04 1.74 7.78 -2.39 -0.02 1.72 16 45 H 0.05 1.52 8.05 -2.39 -0.02 1.50 16 46 H 0.03 1.26 7.67 -2.39 -0.02 1.24 16 Total: -1.00 -86.16 363.73 3.02 -83.13 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.01 Total: 5.57 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 8.13 Total: 20.01 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -8.08 Total: -134.29 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.06 Total: -22.82 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -86.16 3.02 -83.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041470633.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.576 kcal (2) G-P(sol) polarization free energy of solvation -86.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds