Wall clock time and date at job start Sat Apr 11 2020 06:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99848 * 2 1 4 4 H 1.48508 * 109.47049 * 264.53370 * 3 2 1 5 5 H 1.48504 * 109.47265 * 24.53534 * 3 2 1 6 6 H 1.48498 * 109.47123 * 144.53726 * 3 2 1 7 7 C 1.38811 * 120.00415 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00057 * 337.56110 * 7 2 1 9 9 N 1.36933 * 120.00238 * 157.55885 * 7 2 1 10 10 C 1.47543 * 125.67013 * 341.53655 * 9 7 2 11 11 C 1.55146 * 105.06674 * 203.97358 * 10 9 7 12 12 C 1.53893 * 101.45103 * 324.20824 * 11 10 9 13 13 C 1.53039 * 111.37173 * 154.99728 * 12 11 10 14 14 C 1.54714 * 104.47511 * 121.00916 * 13 12 11 15 15 N 1.48257 * 104.66743 * 23.66665 * 14 13 12 16 16 C 1.34775 * 127.74072 * 141.18636 * 15 14 13 17 17 O 1.21761 * 120.00344 * 179.97438 * 16 15 14 18 18 C 1.46297 * 119.99578 * 359.97438 * 16 15 14 19 19 N 1.32509 * 125.56598 * 359.68834 * 18 16 15 20 20 C 1.32034 * 109.86932 * 179.82326 * 19 18 16 21 21 C 1.39365 * 107.93071 * 0.43855 * 20 19 18 22 22 C 1.40416 * 133.41745 * 179.71463 * 21 20 19 23 23 C 1.36328 * 119.18862 * 180.02562 * 22 21 20 24 24 C 1.40323 * 119.58969 * 359.97438 * 23 22 21 25 25 C 1.35167 * 120.39794 * 359.97438 * 24 23 22 26 26 N 1.36181 * 120.59528 * 0.03943 * 25 24 23 27 27 C 1.48451 * 104.53097 * 321.18878 * 15 14 13 28 28 C 1.47593 * 125.81047 * 161.57940 * 9 7 2 29 29 H 0.97001 * 120.00285 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.34318 * 85.05047 * 10 9 7 31 31 H 1.08997 * 110.34364 * 322.89530 * 10 9 7 32 32 H 1.09000 * 111.03307 * 82.24912 * 11 10 9 33 33 H 1.08993 * 111.03015 * 206.12820 * 11 10 9 34 34 H 1.08999 * 110.43218 * 239.75478 * 13 12 11 35 35 H 1.09002 * 110.43307 * 2.13641 * 13 12 11 36 36 H 1.08998 * 110.39989 * 142.45959 * 14 13 12 37 37 H 1.08994 * 110.39942 * 264.75653 * 14 13 12 38 38 H 1.07991 * 126.03343 * 180.19500 * 20 19 18 39 39 H 1.07993 * 120.40495 * 0.02562 * 22 21 20 40 40 H 1.08000 * 120.20348 * 179.97438 * 23 22 21 41 41 H 1.08006 * 119.80400 * 180.02562 * 24 23 22 42 42 H 1.07997 * 119.70548 * 180.02562 * 25 24 23 43 43 H 1.08999 * 110.46457 * 279.70413 * 27 15 14 44 44 H 1.09000 * 110.46578 * 157.11124 * 27 15 14 45 45 H 1.09001 * 109.94871 * 58.62048 * 28 9 7 46 46 H 1.08997 * 109.96501 * 297.37869 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6131 1.9798 -1.3938 5 1 1.3945 2.6833 0.5814 6 1 3.4851 1.4763 0.8123 7 6 2.0103 -1.2021 0.0005 8 1 1.5317 -2.1019 0.3579 9 7 3.3018 -1.2472 -0.4521 10 6 3.9505 -0.2328 -1.3049 11 6 5.1006 -0.9861 -2.0238 12 6 5.5616 -1.9601 -0.9251 13 6 6.2339 -3.1979 -1.5234 14 6 7.6566 -3.1971 -0.9156 15 7 7.5288 -2.4158 0.3379 16 6 8.1232 -2.6554 1.5236 17 8 7.9172 -1.9156 2.4685 18 6 9.0159 -3.8045 1.6752 19 7 9.3124 -4.6806 0.7263 20 6 10.1486 -5.5871 1.1979 21 6 10.4004 -5.2843 2.5348 22 6 11.1901 -5.8852 3.5283 23 6 11.2263 -5.3320 4.7737 24 6 10.4771 -4.1758 5.0404 25 6 9.7234 -3.6106 4.0713 26 7 9.6783 -4.1533 2.8231 27 6 6.5994 -1.3103 -0.0053 28 6 4.2787 -2.3172 -0.1708 29 1 -0.4850 0.8400 -0.0004 30 1 4.3512 0.5759 -0.6937 31 1 3.2411 0.1595 -2.0335 32 1 4.7300 -1.5262 -2.8950 33 1 5.9022 -0.3020 -2.3023 34 1 5.6965 -4.1006 -1.2330 35 1 6.2819 -3.1174 -2.6094 36 1 7.9770 -4.2158 -0.6972 37 1 8.3598 -2.7158 -1.5952 38 1 10.5611 -6.4189 0.6464 39 1 11.7617 -6.7746 3.3084 40 1 11.8278 -5.7809 5.5503 41 1 10.5036 -3.7345 6.0258 42 1 9.1515 -2.7206 4.2887 43 1 7.1297 -0.5158 -0.5305 44 1 6.1214 -0.9213 0.8937 45 1 3.8937 -3.2742 -0.5232 46 1 4.4779 -2.3673 0.8996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041471454.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:00 Heat of formation + Delta-G solvation = 104.207682 kcal Electronic energy + Delta-G solvation = -29566.651884 eV Core-core repulsion = 25651.976986 eV Total energy + Delta-G solvation = -3914.674898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.20105 -40.20833 -38.44828 -37.80782 -35.89307 -33.73693 -32.72865 -31.46777 -30.89631 -29.40018 -29.03532 -28.25974 -26.22653 -24.49921 -24.25916 -23.11644 -22.59664 -22.17352 -20.84240 -20.09672 -18.94205 -17.68072 -17.28595 -16.86756 -16.66357 -16.46642 -15.96579 -15.52479 -15.42728 -15.11951 -15.00104 -14.70431 -14.15907 -13.92931 -13.62329 -13.47248 -13.14676 -12.74562 -12.48442 -12.36295 -12.30255 -12.17946 -11.95306 -11.82397 -11.60765 -11.46833 -11.17256 -11.00552 -10.93407 -10.58829 -10.39625 -10.25053 -10.09723 -9.94342 -9.83308 -9.73832 -9.37108 -8.75700 -8.61554 -7.86056 -6.98463 -5.89407 -3.18880 0.37785 0.51820 1.94097 2.07396 2.98899 3.03323 3.28028 3.38438 3.52798 3.56028 4.01073 4.06736 4.27917 4.42717 4.49365 4.60076 4.60531 4.71795 4.77518 4.89729 5.00291 5.07777 5.24348 5.34297 5.37964 5.40526 5.51426 5.56928 5.59428 5.73627 5.80068 5.83509 5.89286 5.89522 6.05297 6.08577 6.14946 6.16580 6.27600 6.36530 6.44218 6.59645 6.64424 6.70216 6.71893 6.82680 7.29187 7.50006 7.75742 8.02227 8.36179 8.88565 9.74280 10.23816 11.26955 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019729 B = 0.002778 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.857314 B =10077.205052 C =10762.836883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.882 3.118 4 H -0.285 1.285 5 H -0.303 1.303 6 H -0.276 1.276 7 C -0.238 4.238 8 H 0.091 0.909 9 N -0.610 5.610 10 C 0.109 3.891 11 C -0.116 4.116 12 C -0.087 4.087 13 C -0.119 4.119 14 C 0.091 3.909 15 N -0.597 5.597 16 C 0.626 3.374 17 O -0.549 6.549 18 C 0.096 3.904 19 N -0.400 5.400 20 C -0.014 4.014 21 C 0.020 3.980 22 C -0.083 4.083 23 C -0.111 4.111 24 C -0.135 4.135 25 C 0.066 3.934 26 N -0.320 5.320 27 C 0.125 3.875 28 C 0.151 3.849 29 H 0.262 0.738 30 H 0.024 0.976 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.189 0.811 39 H 0.151 0.849 40 H 0.141 0.859 41 H 0.154 0.846 42 H 0.179 0.821 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.037 0.963 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.109 -12.315 3.560 29.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.712 3.288 4 H -0.212 1.212 5 H -0.231 1.231 6 H -0.202 1.202 7 C -0.365 4.365 8 H 0.109 0.891 9 N -0.337 5.337 10 C -0.016 4.016 11 C -0.155 4.155 12 C -0.088 4.088 13 C -0.157 4.157 14 C -0.031 4.031 15 N -0.329 5.329 16 C 0.413 3.587 17 O -0.427 6.427 18 C -0.153 4.153 19 N -0.117 5.117 20 C -0.176 4.176 21 C -0.092 4.092 22 C -0.102 4.102 23 C -0.132 4.132 24 C -0.156 4.156 25 C -0.057 4.057 26 N 0.011 4.989 27 C 0.004 3.996 28 C 0.026 3.974 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.131 0.869 37 H 0.087 0.913 38 H 0.206 0.794 39 H 0.169 0.831 40 H 0.159 0.841 41 H 0.171 0.829 42 H 0.196 0.804 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.055 0.945 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 26.310 -11.605 3.377 28.954 hybrid contribution 0.735 0.971 0.949 1.544 sum 27.046 -10.634 4.326 29.381 Atomic orbital electron populations 1.69841 1.05540 1.26505 1.53560 1.24983 0.95154 0.97347 1.00272 0.86988 0.79261 0.84764 0.77748 1.21200 1.23129 1.20212 1.18636 0.84324 0.95429 1.38152 0.89130 1.44959 1.09837 1.22198 1.56659 1.22029 0.93780 0.92490 0.93311 1.22714 0.98297 0.97601 0.96862 1.21630 0.95332 0.95740 0.96103 1.22498 0.94752 0.98047 1.00448 1.22907 0.97181 0.98940 0.84077 1.48572 1.45162 1.29456 1.09665 1.15592 0.78973 0.82051 0.82077 1.90852 1.64200 1.49067 1.38611 1.22233 1.07829 1.03206 0.82047 1.69925 1.11584 1.02244 1.27905 1.22778 1.02289 1.02180 0.90345 1.20039 1.00351 0.91023 0.97796 1.20568 0.98018 1.00359 0.91295 1.21199 0.99208 0.95735 0.97070 1.21005 0.97730 0.97210 0.99628 1.22140 1.01122 1.00551 0.81867 1.42389 1.28720 1.18757 1.09028 1.22400 0.89236 0.88312 0.99677 1.21333 0.86901 0.92628 0.96582 0.92778 0.95824 0.92280 0.90499 0.91311 0.90497 0.89954 0.86943 0.91256 0.79376 0.83094 0.84092 0.82887 0.80356 0.90708 0.89203 0.94498 0.95157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.72 13.97 55.49 0.78 -27.95 16 2 C 0.02 0.62 5.43 -17.43 -0.09 0.52 16 3 Si 0.88 23.23 24.27 -169.99 -4.13 19.10 16 4 H -0.28 -7.14 6.49 56.52 0.37 -6.77 16 5 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 6 H -0.28 -7.25 6.66 56.52 0.38 -6.87 16 7 C -0.24 -6.96 10.59 -15.06 -0.16 -7.12 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.38 16 9 N -0.61 -15.12 3.23 -170.15 -0.55 -15.67 16 10 C 0.11 2.38 4.62 -2.34 -0.01 2.37 16 11 C -0.12 -1.88 5.90 -25.13 -0.15 -2.03 16 12 C -0.09 -1.39 0.79 -153.92 -0.12 -1.52 16 13 C -0.12 -1.51 6.31 -25.81 -0.16 -1.68 16 14 C 0.09 1.13 6.67 -2.17 -0.01 1.11 16 15 N -0.60 -9.11 3.33 -171.19 -0.57 -9.68 16 16 C 0.63 10.30 7.87 -13.02 -0.10 10.20 16 17 O -0.55 -10.31 15.61 5.13 0.08 -10.23 16 18 C 0.10 1.37 7.71 -153.90 -1.19 0.18 16 19 N -0.40 -5.08 8.10 -10.62 -0.09 -5.16 16 20 C -0.01 -0.14 12.00 -17.05 -0.20 -0.35 16 21 C 0.02 0.20 6.80 -84.20 -0.57 -0.37 16 22 C -0.08 -0.55 10.11 -39.45 -0.40 -0.95 16 23 C -0.11 -0.65 10.08 -39.49 -0.40 -1.04 16 24 C -0.14 -0.96 9.98 -39.89 -0.40 -1.35 16 25 C 0.07 0.69 10.52 -16.71 -0.18 0.51 16 26 N -0.32 -3.96 2.95 -58.89 -0.17 -4.13 16 27 C 0.13 2.02 6.04 -2.89 -0.02 2.01 16 28 C 0.15 3.10 6.37 -3.42 -0.02 3.08 16 29 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 30 H 0.02 0.55 5.56 -51.93 -0.29 0.26 16 31 H 0.06 1.38 6.65 -51.93 -0.35 1.03 16 32 H 0.08 1.17 7.90 -51.93 -0.41 0.76 16 33 H 0.07 0.94 7.65 -51.93 -0.40 0.54 16 34 H 0.08 1.00 7.41 -51.93 -0.38 0.62 16 35 H 0.08 0.89 7.62 -51.93 -0.40 0.49 16 36 H 0.11 1.38 5.47 -51.93 -0.28 1.10 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.19 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.14 0.40 8.06 -52.49 -0.42 -0.03 16 41 H 0.15 0.65 8.06 -52.48 -0.42 0.22 16 42 H 0.18 1.98 6.77 -52.49 -0.36 1.63 16 43 H 0.07 1.08 7.59 -51.93 -0.39 0.69 16 44 H 0.09 1.72 7.41 -51.93 -0.38 1.33 16 45 H 0.04 0.75 7.48 -51.93 -0.39 0.36 16 46 H 0.03 0.67 7.63 -51.93 -0.40 0.28 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -36.16 361.36 -9.55 -45.71 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.16 Total: -1.01 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -4.19 Total: 3.57 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: -0.60 Total: -62.59 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.13 Total: 19.10 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.16 -9.55 -45.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041471454.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.916 kcal (2) G-P(sol) polarization free energy of solvation -36.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds