Wall clock time and date at job start Sat Apr 11 2020 06:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86791 * 120.00292 * 2 1 4 4 H 1.48507 * 109.46981 * 269.99614 * 3 2 1 5 5 H 1.48500 * 109.47245 * 29.99512 * 3 2 1 6 6 H 1.48495 * 109.47483 * 149.99781 * 3 2 1 7 7 C 1.38816 * 119.99590 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99739 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00374 * 0.02562 * 7 2 1 10 10 C 1.47566 * 125.67198 * 359.97438 * 9 7 2 11 11 C 1.55188 * 105.00581 * 203.86508 * 10 9 7 12 12 C 1.53643 * 101.41627 * 324.52063 * 11 10 9 13 13 C 1.53085 * 111.78942 * 155.66414 * 12 11 10 14 14 C 1.54347 * 104.62486 * 141.29070 * 13 12 11 15 15 N 1.47615 * 107.22236 * 2.12241 * 14 13 12 16 16 C 1.34774 * 126.92030 * 155.05661 * 15 14 13 17 17 O 1.21594 * 119.99791 * 176.45929 * 16 15 14 18 18 C 1.47522 * 119.99915 * 356.47180 * 16 15 14 19 19 C 1.46497 * 120.17212 * 24.57579 * 18 16 15 20 20 C 1.35526 * 119.05047 * 179.97438 * 19 18 16 21 21 C 1.41227 * 119.42811 * 0.02562 * 20 19 18 22 22 C 1.37909 * 132.97602 * 179.97438 * 21 20 19 23 23 N 1.33449 * 107.66351 * 180.02562 * 22 21 20 24 24 C 1.30752 * 109.93398 * 0.02562 * 23 22 21 25 25 N 1.35926 * 109.20774 * 359.97438 * 24 23 22 26 26 C 1.36323 * 120.16110 * 204.30487 * 18 16 15 27 27 C 1.48688 * 106.01489 * 335.23629 * 15 14 13 28 28 C 1.47406 * 125.67570 * 180.02562 * 9 7 2 29 29 H 0.96996 * 119.99973 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.33283 * 322.74415 * 10 9 7 31 31 H 1.08991 * 110.33619 * 84.87984 * 10 9 7 32 32 H 1.09003 * 111.03528 * 206.49156 * 11 10 9 33 33 H 1.09001 * 111.03668 * 82.55759 * 11 10 9 34 34 H 1.09005 * 110.40777 * 22.50377 * 13 12 11 35 35 H 1.08997 * 110.50900 * 260.12949 * 13 12 11 36 36 H 1.08999 * 109.92191 * 121.57629 * 14 13 12 37 37 H 1.09004 * 109.92097 * 242.67411 * 14 13 12 38 38 H 1.08005 * 120.47140 * 0.02562 * 19 18 16 39 39 H 1.08000 * 120.29093 * 180.02562 * 20 19 18 40 40 H 1.08000 * 126.16865 * 0.04991 * 22 21 20 41 41 H 1.07994 * 125.39392 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.75550 * 0.02562 * 26 18 16 43 43 H 1.09000 * 110.53550 * 278.94207 * 27 15 14 44 44 H 1.08995 * 110.86432 * 155.91652 * 27 15 14 45 45 H 1.08999 * 109.98597 * 58.52542 * 28 9 7 46 46 H 1.09001 * 110.01752 * 297.23198 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1430 -2.5340 0.0005 11 6 -0.4073 -3.9378 0.6070 12 6 0.7833 -4.7367 0.0549 13 6 1.1115 -5.9470 0.9329 14 6 1.4821 -7.0639 -0.0658 15 7 1.4130 -6.4801 -1.4198 16 6 2.0724 -6.9006 -2.5174 17 8 1.8725 -6.3635 -3.5898 18 6 3.0365 -8.0128 -2.4178 19 6 2.9153 -8.9980 -1.3404 20 6 3.8131 -10.0108 -1.2707 21 6 4.8421 -10.0934 -2.2344 22 6 5.8801 -10.9806 -2.4277 23 7 6.5599 -10.5803 -3.5041 24 6 6.0157 -9.4989 -3.9982 25 7 4.9400 -9.1540 -3.2422 26 6 4.0414 -8.1320 -3.3312 27 6 0.4724 -5.3325 -1.3242 28 6 1.9326 -3.7313 0.0016 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6003 -1.7619 0.6193 31 1 -0.5289 -2.4806 -1.0174 32 1 -1.3524 -4.3468 0.2495 33 1 -0.3846 -3.9040 1.6962 34 1 0.2410 -6.2369 1.5215 35 1 1.9552 -5.7268 1.5869 36 1 2.4926 -7.4204 0.1338 37 1 0.7741 -7.8884 0.0195 38 1 2.1213 -8.9187 -0.6125 39 1 3.7423 -10.7484 -0.4850 40 1 6.1025 -11.8440 -1.8182 41 1 6.3650 -8.9650 -4.8695 42 1 4.1298 -7.4088 -4.1284 43 1 -0.5599 -5.6794 -1.3699 44 1 0.6675 -4.6040 -2.1112 45 1 2.5728 -3.8501 0.8758 46 1 2.5141 -3.8787 -0.9085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041474805.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:06 Heat of formation + Delta-G solvation = 85.766202 kcal Electronic energy + Delta-G solvation = -29345.450726 eV Core-core repulsion = 25429.976145 eV Total energy + Delta-G solvation = -3915.474581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.75831 -41.62163 -39.93237 -37.88020 -37.30660 -34.77965 -34.27098 -32.53022 -31.78157 -30.84018 -29.58831 -29.11951 -27.68703 -26.33830 -24.69777 -24.29133 -23.27172 -22.85486 -22.19061 -20.80631 -20.20526 -19.23900 -18.83016 -18.25164 -17.36724 -17.10194 -16.91649 -16.79837 -16.54784 -16.11894 -15.81033 -15.56413 -15.55352 -14.99894 -14.90374 -14.51052 -14.31269 -14.20537 -13.90812 -13.58898 -13.21328 -13.19342 -12.98297 -12.92317 -12.83931 -12.72148 -12.57687 -12.26544 -12.03085 -11.82320 -11.76304 -11.49569 -11.40597 -11.40005 -11.22258 -11.14157 -10.75599 -10.40517 -9.79498 -8.90134 -8.59138 -7.79919 -5.23765 -0.46620 0.01327 1.28088 1.43030 1.44973 1.53515 1.55306 1.91377 2.05378 2.42173 2.46796 3.22114 3.30717 3.36784 3.52440 3.62672 3.66981 3.67883 3.71193 3.82933 3.86769 3.91508 4.23956 4.28313 4.35088 4.40811 4.51634 4.61081 4.67537 4.70608 4.77045 4.77984 4.86220 4.88974 4.94518 5.08463 5.08843 5.12383 5.19444 5.36032 5.38794 5.43352 5.44678 5.57402 5.66822 5.82748 6.01297 6.30628 6.40821 6.77754 6.90832 7.09553 7.76664 8.40146 9.21569 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.002618 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.058195 B =10691.082337 C =11500.703843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.065 4.065 3 Si 0.977 3.023 4 H -0.291 1.291 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.241 4.241 8 H 0.074 0.926 9 N -0.627 5.627 10 C 0.150 3.850 11 C -0.111 4.111 12 C -0.074 4.074 13 C -0.111 4.111 14 C 0.088 3.912 15 N -0.608 5.608 16 C 0.580 3.420 17 O -0.587 6.587 18 C -0.150 4.150 19 C -0.119 4.119 20 C -0.065 4.065 21 C -0.014 4.014 22 C -0.026 4.026 23 N -0.482 5.482 24 C 0.145 3.855 25 N -0.382 5.382 26 C 0.116 3.884 27 C 0.129 3.871 28 C 0.152 3.848 29 H 0.247 0.753 30 H 0.072 0.928 31 H -0.021 1.021 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.182 0.818 39 H 0.192 0.808 40 H 0.207 0.793 41 H 0.239 0.761 42 H 0.176 0.824 43 H 0.098 0.902 44 H 0.042 0.958 45 H 0.032 0.968 46 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.987 -25.212 2.404 25.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.218 1.218 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.353 5.353 10 C 0.026 3.974 11 C -0.149 4.149 12 C -0.075 4.075 13 C -0.149 4.149 14 C -0.033 4.033 15 N -0.339 5.339 16 C 0.370 3.630 17 O -0.469 6.469 18 C -0.157 4.157 19 C -0.138 4.138 20 C -0.084 4.084 21 C -0.121 4.121 22 C -0.178 4.178 23 N -0.196 5.196 24 C -0.129 4.129 25 N -0.055 5.055 26 C -0.007 4.007 27 C 0.007 3.993 28 C 0.027 3.973 29 H 0.057 0.943 30 H 0.090 0.910 31 H -0.003 1.003 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.131 0.869 38 H 0.199 0.801 39 H 0.209 0.791 40 H 0.224 0.776 41 H 0.255 0.745 42 H 0.193 0.807 43 H 0.116 0.884 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 4.676 -25.108 1.351 25.576 hybrid contribution -0.154 2.215 -0.558 2.290 sum 4.522 -22.893 0.792 23.349 Atomic orbital electron populations 1.70048 1.06058 1.25025 1.58478 1.25590 0.96675 1.00817 1.02697 0.85095 0.77770 0.79287 0.77293 1.21826 1.21473 1.19421 1.19398 0.90791 0.84114 1.42710 0.90856 1.44966 1.02950 1.00738 1.86667 1.21821 0.83635 0.95727 0.96245 1.22707 0.96959 0.94564 1.00693 1.21453 0.95866 0.95091 0.95119 1.22466 1.04165 0.91488 0.96785 1.22986 1.04154 0.97069 0.79044 1.48820 1.43583 1.31563 1.09924 1.17720 0.80100 0.82550 0.82602 1.90814 1.67284 1.59800 1.28970 1.20264 0.97498 0.98632 0.99292 1.22861 1.01402 0.92699 0.96875 1.20902 0.90997 0.99148 0.97395 1.20299 1.02691 0.94502 0.94631 1.23108 0.93972 1.02500 0.98236 1.69992 1.28126 1.10645 1.10788 1.25824 0.87913 0.97615 1.01587 1.43078 1.21018 1.19126 1.22240 1.21659 0.88974 0.90581 0.99468 1.22291 0.93530 0.87033 0.96494 1.21243 0.94494 0.84821 0.96715 0.94281 0.91042 1.00269 0.88886 0.90163 0.86812 0.89708 0.88279 0.86883 0.80076 0.79130 0.77591 0.74533 0.80685 0.88421 0.93943 0.95002 0.98627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.82 10.10 21.65 0.22 -56.61 16 2 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 3 Si 0.98 46.50 29.55 68.60 2.03 48.52 16 4 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.24 -13.86 10.28 84.03 0.86 -13.00 16 8 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.63 -32.61 3.41 -693.07 -2.36 -34.98 16 10 C 0.15 7.27 5.84 86.93 0.51 7.77 16 11 C -0.11 -3.57 5.94 31.56 0.19 -3.39 16 12 C -0.07 -2.18 0.68 -51.87 -0.04 -2.22 16 13 C -0.11 -1.97 6.15 31.08 0.19 -1.77 16 14 C 0.09 1.27 5.09 86.62 0.44 1.71 16 15 N -0.61 -15.05 3.32 -813.63 -2.70 -17.75 16 16 C 0.58 16.51 7.71 86.69 0.67 17.18 16 17 O -0.59 -22.12 16.81 -4.01 -0.07 -22.19 16 18 C -0.15 -3.21 5.84 -19.12 -0.11 -3.32 16 19 C -0.12 -1.59 8.18 23.80 0.19 -1.39 16 20 C -0.07 -0.76 10.09 22.38 0.23 -0.53 16 21 C -0.01 -0.24 6.78 38.81 0.26 0.02 16 22 C -0.03 -0.46 12.00 84.37 1.01 0.55 16 23 N -0.48 -10.37 11.19 -197.51 -2.21 -12.58 16 24 C 0.15 2.74 12.76 179.91 2.30 5.03 16 25 N -0.38 -7.56 2.94 -349.85 -1.03 -8.59 16 26 C 0.12 2.46 10.49 83.54 0.88 3.34 16 27 C 0.13 3.84 5.83 86.10 0.50 4.34 16 28 C 0.15 6.24 6.46 86.14 0.56 6.79 16 29 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.07 3.94 5.89 -2.39 -0.01 3.93 16 31 H -0.02 -1.11 8.14 -2.39 -0.02 -1.12 16 32 H 0.09 2.46 7.78 -2.39 -0.02 2.44 16 33 H 0.08 2.42 8.08 -2.39 -0.02 2.40 16 34 H 0.11 1.38 7.89 -2.38 -0.02 1.36 16 35 H 0.08 1.50 7.43 -2.39 -0.02 1.49 16 36 H 0.10 1.14 5.96 -2.39 -0.01 1.13 16 37 H 0.11 0.81 7.38 -2.39 -0.02 0.79 16 38 H 0.18 1.34 4.57 -2.91 -0.01 1.32 16 39 H 0.19 0.63 8.06 -2.91 -0.02 0.60 16 40 H 0.21 2.22 8.06 -2.91 -0.02 2.20 16 41 H 0.24 2.80 8.06 -2.91 -0.02 2.78 16 42 H 0.18 3.62 7.76 -2.91 -0.02 3.59 16 43 H 0.10 2.45 7.83 -2.39 -0.02 2.43 16 44 H 0.04 1.68 7.77 -2.39 -0.02 1.66 16 45 H 0.03 1.26 7.45 -2.39 -0.02 1.24 16 46 H 0.00 -0.19 7.81 -2.39 -0.02 -0.21 16 Total: -1.00 -82.02 366.30 3.99 -78.03 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 1.01 Total: 8.31 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 9.10 Total: 17.84 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -8.08 Total: -130.51 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.07 Total: -22.19 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -82.02 3.99 -78.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041474805.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.799 kcal (2) G-P(sol) polarization free energy of solvation -82.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds