Wall clock time and date at job start Sat Apr 11 2020 06:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99963 * 2 1 4 4 H 1.48496 * 109.46864 * 270.00217 * 3 2 1 5 5 H 1.48504 * 109.47121 * 29.99971 * 3 2 1 6 6 H 1.48499 * 109.47001 * 150.00028 * 3 2 1 7 7 C 1.38802 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00287 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00448 * 0.02562 * 7 2 1 10 10 C 1.47141 * 125.60325 * 359.96869 * 9 7 2 11 11 C 1.54581 * 107.33168 * 179.09080 * 10 9 7 12 12 C 1.53707 * 102.94986 * 339.04282 * 11 10 9 13 13 C 1.52888 * 111.74687 * 273.44755 * 12 11 10 14 14 C 1.54757 * 104.40670 * 237.42850 * 13 12 11 15 15 N 1.48278 * 104.67468 * 23.63297 * 14 13 12 16 16 C 1.34776 * 127.72062 * 141.29195 * 15 14 13 17 17 O 1.21601 * 120.00160 * 353.87515 * 16 15 14 18 18 C 1.47525 * 119.99708 * 173.88021 * 16 15 14 19 19 C 1.46506 * 120.16588 * 339.72072 * 18 16 15 20 20 C 1.35532 * 119.04418 * 180.02562 * 19 18 16 21 21 C 1.41230 * 119.42964 * 0.02562 * 20 19 18 22 22 C 1.37913 * 132.97197 * 179.97438 * 21 20 19 23 23 N 1.33447 * 107.65875 * 180.02562 * 22 21 20 24 24 C 1.30747 * 109.93608 * 0.02562 * 23 22 21 25 25 N 1.35917 * 109.21121 * 359.97438 * 24 23 22 26 26 C 1.36319 * 120.16556 * 159.45618 * 18 16 15 27 27 C 1.48483 * 104.55479 * 321.28662 * 15 14 13 28 28 C 1.47706 * 125.61065 * 180.02562 * 9 7 2 29 29 H 0.97008 * 120.00141 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.86999 * 59.65339 * 10 9 7 31 31 H 1.09000 * 109.99092 * 298.59764 * 10 9 7 32 32 H 1.09005 * 110.74653 * 97.45490 * 11 10 9 33 33 H 1.09000 * 110.74930 * 220.62309 * 11 10 9 34 34 H 1.09002 * 110.44269 * 356.15304 * 13 12 11 35 35 H 1.09001 * 110.44917 * 118.57108 * 13 12 11 36 36 H 1.08993 * 110.39804 * 142.42851 * 14 13 12 37 37 H 1.08997 * 110.39905 * 264.72170 * 14 13 12 38 38 H 1.07995 * 120.47652 * 0.03064 * 19 18 16 39 39 H 1.08002 * 120.28446 * 179.97438 * 20 19 18 40 40 H 1.07999 * 126.16878 * 359.97438 * 22 21 20 41 41 H 1.08006 * 125.39204 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.75207 * 359.96941 * 26 18 16 43 43 H 1.09004 * 110.47561 * 279.56530 * 27 15 14 44 44 H 1.08999 * 110.47630 * 156.96288 * 27 15 14 45 45 H 1.08995 * 110.38706 * 321.36477 * 28 9 7 46 46 H 1.08996 * 110.39173 * 83.75688 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1388 -2.5318 -0.0016 11 6 -0.4529 -4.0451 -0.0264 12 6 0.8459 -4.6576 -0.5747 13 6 0.8604 -4.6802 -2.1033 14 6 1.0604 -6.1717 -2.4645 15 7 0.5698 -6.9144 -1.2786 16 6 -0.1316 -8.0651 -1.2585 17 8 -0.5273 -8.5543 -2.2991 18 6 -0.4192 -8.7312 0.0260 19 6 0.3908 -8.4301 1.2091 20 6 0.1069 -9.0556 2.3774 21 6 -0.9591 -9.9806 2.4282 22 6 -1.4813 -10.7585 3.4402 23 7 -2.4974 -11.4574 2.9304 24 6 -2.6460 -11.1686 1.6639 25 7 -1.7105 -10.2516 1.3015 26 6 -1.4435 -9.6259 0.1194 27 6 1.0240 -6.1069 -0.1183 28 6 1.9356 -3.7332 -0.0017 29 1 -0.4851 0.8401 0.0004 30 1 -0.5582 -2.0517 -0.8858 31 1 -0.5575 -2.0811 0.8982 32 1 -0.6592 -4.4132 0.9786 33 1 -1.2900 -4.2549 -0.6923 34 1 -0.0883 -4.3167 -2.4984 35 1 1.6861 -4.0799 -2.4852 36 1 0.4731 -6.4314 -3.3451 37 1 2.1158 -6.3825 -2.6369 38 1 1.2024 -7.7200 1.1510 39 1 0.6914 -8.8490 3.2618 40 1 -1.1306 -10.7960 4.4610 41 1 -3.3937 -11.5918 1.0093 42 1 -2.0445 -9.8453 -0.7507 43 1 2.0719 -6.3113 0.1017 44 1 0.4036 -6.3108 0.7544 45 1 2.8197 -3.7491 -0.6389 46 1 2.1929 -4.0337 1.0139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041474807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:09 Heat of formation + Delta-G solvation = 86.633366 kcal Electronic energy + Delta-G solvation = -29410.096060 eV Core-core repulsion = 25494.659083 eV Total energy + Delta-G solvation = -3915.436978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.74016 -41.57412 -39.91339 -37.88246 -37.21908 -34.62789 -34.28530 -32.58979 -31.60792 -30.73481 -29.96876 -29.15211 -27.29952 -26.15120 -25.08863 -23.88195 -23.52949 -22.83012 -22.09682 -20.78648 -20.17154 -19.19326 -18.77233 -18.28801 -17.31736 -17.07654 -16.89865 -16.67317 -16.58311 -15.84692 -15.77562 -15.61907 -15.57661 -15.27072 -14.67131 -14.43742 -14.26366 -14.11328 -13.87037 -13.80272 -13.27182 -13.18376 -12.93927 -12.85400 -12.76443 -12.73584 -12.33721 -12.25950 -12.01063 -11.80886 -11.74132 -11.54271 -11.39558 -11.32996 -11.28781 -11.15495 -10.66177 -10.38764 -9.80864 -8.83529 -8.58059 -7.81094 -5.15283 -0.44751 0.01483 1.33431 1.48393 1.49171 1.55343 1.57737 1.92374 2.07107 2.44423 2.52544 3.22979 3.36654 3.39486 3.47168 3.64866 3.66877 3.71181 3.76725 3.85651 3.90235 3.92536 4.24356 4.29966 4.37237 4.39239 4.52894 4.54337 4.62270 4.72549 4.78226 4.80899 4.85788 4.92573 4.95776 5.02336 5.09273 5.13796 5.21599 5.33265 5.43569 5.44566 5.51344 5.56748 5.70139 5.81653 6.05313 6.23417 6.39513 6.79372 6.92110 7.14368 7.83122 8.46995 9.29239 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.002585 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.933024 B =10829.011911 C =11616.395681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.973 3.027 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.232 4.232 8 H 0.087 0.913 9 N -0.624 5.624 10 C 0.190 3.810 11 C -0.117 4.117 12 C -0.076 4.076 13 C -0.109 4.109 14 C 0.113 3.887 15 N -0.609 5.609 16 C 0.591 3.409 17 O -0.578 6.578 18 C -0.157 4.157 19 C -0.119 4.119 20 C -0.071 4.071 21 C -0.012 4.012 22 C -0.028 4.028 23 N -0.483 5.483 24 C 0.151 3.849 25 N -0.384 5.384 26 C 0.126 3.874 27 C 0.113 3.887 28 C 0.147 3.853 29 H 0.243 0.757 30 H 0.004 0.996 31 H 0.001 0.999 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.172 0.828 39 H 0.183 0.817 40 H 0.203 0.797 41 H 0.244 0.756 42 H 0.187 0.813 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.052 0.948 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.328 -21.437 2.506 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.802 3.198 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.361 4.361 8 H 0.105 0.895 9 N -0.350 5.350 10 C 0.065 3.935 11 C -0.155 4.155 12 C -0.077 4.077 13 C -0.147 4.147 14 C -0.009 4.009 15 N -0.340 5.340 16 C 0.381 3.619 17 O -0.459 6.459 18 C -0.164 4.164 19 C -0.139 4.139 20 C -0.090 4.090 21 C -0.119 4.119 22 C -0.180 4.180 23 N -0.197 5.197 24 C -0.124 4.124 25 N -0.056 5.056 26 C 0.003 3.997 27 C -0.009 4.009 28 C 0.022 3.978 29 H 0.053 0.947 30 H 0.022 0.978 31 H 0.020 0.980 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.189 0.811 39 H 0.200 0.800 40 H 0.220 0.780 41 H 0.260 0.740 42 H 0.204 0.796 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.071 0.929 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.458 -22.206 2.350 22.335 hybrid contribution 0.300 2.091 -0.658 2.213 sum 0.759 -20.115 1.692 20.200 Atomic orbital electron populations 1.70198 1.06329 1.24945 1.58869 1.25599 0.96477 1.00948 1.03194 0.85146 0.77778 0.79544 0.77302 1.21604 1.22674 1.19101 1.19461 0.91075 0.83616 1.41969 0.89549 1.44796 1.02081 1.01227 1.86937 1.20869 0.84080 0.91392 0.97175 1.22667 0.96586 0.95533 1.00719 1.21632 0.96098 0.94381 0.95631 1.22256 1.02555 0.95473 0.94396 1.22505 1.00465 0.89533 0.88402 1.48863 1.53073 1.21866 1.10224 1.17470 0.77015 0.79457 0.87914 1.90793 1.53967 1.66037 1.35120 1.20282 0.99782 1.01318 0.94975 1.22767 1.00413 1.00541 0.90204 1.20831 0.94666 0.93419 1.00112 1.20183 0.99012 1.04632 0.88118 1.23052 0.96396 0.98277 1.00270 1.69982 1.18096 1.24013 1.07599 1.25901 0.97367 0.95231 0.93891 1.43101 1.24489 1.29470 1.08545 1.21778 0.97383 0.92239 0.88323 1.22777 1.02023 0.87074 0.89007 1.21684 0.94299 0.83662 0.98129 0.94742 0.97793 0.98028 0.90755 0.91895 0.92546 0.90199 0.90622 0.88498 0.81133 0.80001 0.78042 0.73979 0.79579 0.87145 0.87854 0.92931 0.94380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.65 10.30 21.65 0.22 -56.43 16 2 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 3 Si 0.97 44.68 29.55 68.60 2.03 46.71 16 4 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.23 -12.27 10.28 84.03 0.86 -11.41 16 8 H 0.09 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.62 -29.45 3.41 -692.36 -2.36 -31.81 16 10 C 0.19 8.94 5.34 86.80 0.46 9.41 16 11 C -0.12 -3.90 5.83 31.37 0.18 -3.71 16 12 C -0.08 -2.08 0.82 -51.66 -0.04 -2.12 16 13 C -0.11 -2.93 6.28 31.16 0.20 -2.73 16 14 C 0.11 2.48 7.10 86.64 0.61 3.10 16 15 N -0.61 -13.32 3.33 -812.47 -2.71 -16.02 16 16 C 0.59 14.28 7.74 86.69 0.67 14.95 16 17 O -0.58 -17.56 16.72 -4.04 -0.07 -17.63 16 18 C -0.16 -3.09 5.85 -19.12 -0.11 -3.20 16 19 C -0.12 -1.81 8.19 23.80 0.19 -1.62 16 20 C -0.07 -0.99 10.09 22.38 0.23 -0.76 16 21 C -0.01 -0.22 6.78 38.81 0.26 0.04 16 22 C -0.03 -0.52 12.00 84.37 1.01 0.49 16 23 N -0.48 -10.25 11.19 -197.51 -2.21 -12.46 16 24 C 0.15 2.61 12.76 179.91 2.30 4.91 16 25 N -0.38 -7.09 2.94 -349.84 -1.03 -8.12 16 26 C 0.13 2.31 10.49 83.54 0.88 3.19 16 27 C 0.11 2.16 4.19 85.99 0.36 2.52 16 28 C 0.15 4.95 6.07 86.47 0.52 5.47 16 29 H 0.24 14.22 8.31 -92.70 -0.77 13.45 16 30 H 0.00 0.21 7.39 -2.39 -0.02 0.19 16 31 H 0.00 0.08 7.49 -2.39 -0.02 0.06 16 32 H 0.07 2.23 7.73 -2.38 -0.02 2.21 16 33 H 0.06 2.06 7.71 -2.39 -0.02 2.04 16 34 H 0.06 1.72 7.51 -2.39 -0.02 1.71 16 35 H 0.08 2.28 7.55 -2.39 -0.02 2.26 16 36 H 0.08 1.80 7.85 -2.39 -0.02 1.78 16 37 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.17 1.95 4.80 -2.91 -0.01 1.93 16 39 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 40 H 0.20 2.54 8.06 -2.91 -0.02 2.51 16 41 H 0.24 2.23 8.06 -2.91 -0.02 2.21 16 42 H 0.19 2.93 7.71 -2.91 -0.02 2.91 16 43 H 0.11 1.53 7.58 -2.38 -0.02 1.51 16 44 H 0.10 1.78 5.13 -2.39 -0.01 1.77 16 45 H 0.05 1.68 7.76 -2.39 -0.02 1.66 16 46 H 0.04 1.19 8.06 -2.39 -0.02 1.17 16 Total: -1.00 -74.41 366.78 3.94 -70.47 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.01 Total: 10.16 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 9.06 Total: 15.13 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -8.08 Total: -124.84 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.07 Total: -17.63 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -74.41 3.94 -70.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041474807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.101 kcal (2) G-P(sol) polarization free energy of solvation -74.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds