Wall clock time and date at job start Sat Apr 11 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99848 * 2 1 4 4 H 1.48508 * 109.47049 * 264.53370 * 3 2 1 5 5 H 1.48504 * 109.47265 * 24.53534 * 3 2 1 6 6 H 1.48498 * 109.47123 * 144.53726 * 3 2 1 7 7 C 1.38811 * 120.00415 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00057 * 337.56110 * 7 2 1 9 9 N 1.36933 * 120.00238 * 157.55885 * 7 2 1 10 10 C 1.47543 * 125.67013 * 341.53655 * 9 7 2 11 11 C 1.55146 * 105.06674 * 203.97358 * 10 9 7 12 12 C 1.53893 * 101.45103 * 324.20824 * 11 10 9 13 13 C 1.53039 * 111.37173 * 154.99728 * 12 11 10 14 14 C 1.54714 * 104.47511 * 121.00916 * 13 12 11 15 15 N 1.48257 * 104.66743 * 23.66665 * 14 13 12 16 16 C 1.34775 * 127.74072 * 141.18636 * 15 14 13 17 17 O 1.21588 * 120.00614 * 179.97438 * 16 15 14 18 18 C 1.47590 * 119.99446 * 359.97438 * 16 15 14 19 19 C 1.36577 * 125.91876 * 179.71406 * 18 16 15 20 20 N 1.36194 * 107.09947 * 179.83995 * 19 18 16 21 21 C 1.36680 * 132.29868 * 180.11468 * 20 19 18 22 22 C 1.34853 * 120.63860 * 180.35799 * 21 20 19 23 23 C 1.40574 * 120.34386 * 359.97438 * 22 21 20 24 24 C 1.35894 * 119.72816 * 0.03389 * 23 22 21 25 25 C 1.37278 * 107.33613 * 0.41623 * 20 19 18 26 26 N 1.32235 * 108.37820 * 359.73687 * 25 20 19 27 27 C 1.48451 * 104.53097 * 321.18878 * 15 14 13 28 28 C 1.47593 * 125.81047 * 161.57940 * 9 7 2 29 29 H 0.97001 * 120.00285 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.34318 * 85.05047 * 10 9 7 31 31 H 1.08997 * 110.34364 * 322.89530 * 10 9 7 32 32 H 1.09000 * 111.03307 * 82.24912 * 11 10 9 33 33 H 1.08993 * 111.03015 * 206.12820 * 11 10 9 34 34 H 1.08999 * 110.43218 * 239.75478 * 13 12 11 35 35 H 1.09002 * 110.43307 * 2.13641 * 13 12 11 36 36 H 1.08998 * 110.39989 * 142.45959 * 14 13 12 37 37 H 1.08994 * 110.39942 * 264.75653 * 14 13 12 38 38 H 1.08006 * 126.45148 * 0.02562 * 19 18 16 39 39 H 1.07997 * 119.67814 * 0.33593 * 21 20 19 40 40 H 1.07997 * 119.82844 * 180.02562 * 22 21 20 41 41 H 1.07995 * 120.13201 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.32674 * 179.97438 * 24 23 22 43 43 H 1.08999 * 110.46457 * 279.70413 * 27 15 14 44 44 H 1.09000 * 110.46578 * 157.11124 * 27 15 14 45 45 H 1.09001 * 109.94871 * 58.62048 * 28 9 7 46 46 H 1.08997 * 109.96501 * 297.37869 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6131 1.9798 -1.3938 5 1 1.3945 2.6833 0.5814 6 1 3.4851 1.4763 0.8123 7 6 2.0103 -1.2021 0.0005 8 1 1.5317 -2.1019 0.3579 9 7 3.3018 -1.2472 -0.4521 10 6 3.9505 -0.2328 -1.3049 11 6 5.1006 -0.9861 -2.0238 12 6 5.5616 -1.9601 -0.9251 13 6 6.2339 -3.1979 -1.5234 14 6 7.6566 -3.1971 -0.9156 15 7 7.5288 -2.4158 0.3379 16 6 8.1232 -2.6554 1.5236 17 8 7.9176 -1.9167 2.4671 18 6 9.0238 -3.8147 1.6765 19 6 9.6906 -4.1665 2.8153 20 7 10.4037 -5.2913 2.5306 21 6 11.2373 -6.0678 3.2858 22 6 11.8396 -7.1499 2.7522 23 6 11.6172 -7.4958 1.4079 24 6 10.7913 -6.7338 0.6438 25 6 10.1670 -5.6036 1.2149 26 7 9.3347 -4.7050 0.7164 27 6 6.5994 -1.3103 -0.0053 28 6 4.2787 -2.3172 -0.1708 29 1 -0.4850 0.8400 -0.0004 30 1 4.3512 0.5759 -0.6937 31 1 3.2411 0.1595 -2.0335 32 1 4.7300 -1.5262 -2.8950 33 1 5.9022 -0.3020 -2.3023 34 1 5.6965 -4.1006 -1.2330 35 1 6.2819 -3.1174 -2.6094 36 1 7.9770 -4.2158 -0.6972 37 1 8.3598 -2.7158 -1.5952 38 1 9.6562 -3.6515 3.7641 39 1 11.4156 -5.8119 4.3198 40 1 12.4954 -7.7545 3.3610 41 1 12.1016 -8.3629 0.9840 42 1 10.6139 -6.9904 -0.3901 43 1 7.1297 -0.5158 -0.5305 44 1 6.1214 -0.9213 0.8937 45 1 3.8937 -3.2742 -0.5232 46 1 4.4779 -2.3673 0.8996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041813803.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:22 Heat of formation + Delta-G solvation = 106.927807 kcal Electronic energy + Delta-G solvation = -29275.926043 eV Core-core repulsion = 25361.369098 eV Total energy + Delta-G solvation = -3914.556945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.21703 -40.16639 -38.54775 -37.43722 -35.81019 -34.14857 -32.62752 -31.15330 -30.57244 -29.34503 -29.23440 -28.39699 -26.48697 -24.69942 -23.89506 -23.07815 -22.60207 -22.15940 -20.80300 -19.47155 -18.84351 -18.25840 -17.28853 -17.03558 -16.57548 -16.41881 -15.83952 -15.45217 -15.28340 -15.05258 -14.94524 -14.67686 -14.38918 -13.88360 -13.56078 -13.42475 -13.10857 -12.88485 -12.44424 -12.29919 -12.19501 -12.14889 -11.91325 -11.76624 -11.54257 -11.52015 -11.42163 -10.94677 -10.88501 -10.54887 -10.36564 -10.16955 -9.96550 -9.88015 -9.79861 -9.33941 -9.29674 -8.62598 -8.55206 -8.31538 -6.95094 -5.86624 -3.15817 0.20303 0.80016 1.82551 2.05905 2.96857 2.99195 3.41209 3.43992 3.55498 3.59413 3.67578 3.99790 4.23222 4.34409 4.56781 4.63061 4.68136 4.78223 4.92982 4.95172 5.00002 5.04491 5.12255 5.32759 5.40258 5.43538 5.52084 5.55805 5.64165 5.66928 5.81886 5.86242 5.92894 5.95053 5.97177 6.12158 6.14840 6.21211 6.31428 6.39691 6.48060 6.59945 6.63519 6.75125 6.76281 6.87078 7.28729 7.64378 7.79013 8.19664 8.38990 8.91595 9.77290 10.27171 11.29743 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.002505 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.876302 B =11174.518442 C =11491.428430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 0.882 3.118 4 H -0.285 1.285 5 H -0.303 1.303 6 H -0.276 1.276 7 C -0.238 4.238 8 H 0.091 0.909 9 N -0.610 5.610 10 C 0.109 3.891 11 C -0.116 4.116 12 C -0.086 4.086 13 C -0.119 4.119 14 C 0.095 3.905 15 N -0.603 5.603 16 C 0.616 3.384 17 O -0.538 6.538 18 C 0.019 3.981 19 C -0.018 4.018 20 N -0.365 5.365 21 C 0.056 3.944 22 C -0.139 4.139 23 C -0.103 4.103 24 C -0.074 4.074 25 C 0.223 3.777 26 N -0.460 5.460 27 C 0.122 3.878 28 C 0.151 3.849 29 H 0.262 0.738 30 H 0.024 0.976 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.197 0.803 39 H 0.166 0.834 40 H 0.152 0.848 41 H 0.144 0.856 42 H 0.154 0.846 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.036 0.964 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.850 -15.916 0.996 32.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.178 4.178 3 Si 0.712 3.288 4 H -0.212 1.212 5 H -0.231 1.231 6 H -0.202 1.202 7 C -0.365 4.365 8 H 0.109 0.891 9 N -0.337 5.337 10 C -0.016 4.016 11 C -0.155 4.155 12 C -0.088 4.088 13 C -0.158 4.158 14 C -0.028 4.028 15 N -0.335 5.335 16 C 0.403 3.597 17 O -0.415 6.415 18 C -0.114 4.114 19 C -0.153 4.153 20 N -0.037 5.037 21 C -0.065 4.065 22 C -0.160 4.160 23 C -0.127 4.127 24 C -0.094 4.094 25 C -0.022 4.022 26 N -0.182 5.182 27 C 0.001 3.999 28 C 0.026 3.974 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.213 0.787 39 H 0.183 0.817 40 H 0.170 0.830 41 H 0.162 0.838 42 H 0.171 0.829 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.054 0.946 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 28.198 -15.356 0.902 32.121 hybrid contribution 0.710 1.008 0.947 1.555 sum 28.908 -14.348 1.850 32.326 Atomic orbital electron populations 1.69842 1.05536 1.26475 1.53646 1.24983 0.95159 0.97350 1.00304 0.86987 0.79295 0.84748 0.77739 1.21236 1.23150 1.20151 1.18637 0.84329 0.95417 1.38074 0.89138 1.44963 1.09842 1.22212 1.56656 1.22023 0.93757 0.92497 0.93295 1.22710 0.98280 0.97624 0.96874 1.21619 0.95374 0.95682 0.96087 1.22494 0.94912 0.98030 1.00326 1.22819 0.96918 0.98759 0.84309 1.48795 1.45374 1.29287 1.10050 1.16420 0.79044 0.82690 0.81535 1.90831 1.63390 1.48540 1.38691 1.20565 1.02070 0.98007 0.90745 1.22618 0.99969 0.90474 1.02278 1.42763 1.30156 1.19041 1.11725 1.21703 0.93892 0.93115 0.97763 1.20866 1.01648 0.96948 0.96529 1.21072 0.98008 1.00062 0.93538 1.20360 0.96420 0.91277 1.01356 1.21089 1.00428 0.99135 0.81581 1.70848 1.14311 1.03948 1.29080 1.22365 0.89395 0.88598 0.99589 1.21333 0.86911 0.92547 0.96653 0.92809 0.95812 0.92337 0.90602 0.91360 0.90620 0.90140 0.87148 0.91585 0.78655 0.81677 0.83007 0.83815 0.82853 0.90947 0.89287 0.94583 0.95076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.93 13.97 55.49 0.78 -28.15 16 2 C 0.02 0.61 5.43 -17.43 -0.09 0.51 16 3 Si 0.88 23.48 24.27 -169.99 -4.13 19.35 16 4 H -0.29 -7.23 6.49 56.52 0.37 -6.86 16 5 H -0.30 -8.17 7.11 56.52 0.40 -7.77 16 6 H -0.28 -7.33 6.66 56.52 0.38 -6.95 16 7 C -0.24 -7.01 10.59 -15.06 -0.16 -7.16 16 8 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 9 N -0.61 -15.35 3.23 -170.15 -0.55 -15.90 16 10 C 0.11 2.43 4.62 -2.34 -0.01 2.42 16 11 C -0.12 -1.94 5.90 -25.13 -0.15 -2.08 16 12 C -0.09 -1.43 0.79 -153.92 -0.12 -1.55 16 13 C -0.12 -1.57 6.31 -25.81 -0.16 -1.73 16 14 C 0.09 1.21 6.68 -2.17 -0.01 1.20 16 15 N -0.60 -9.49 3.33 -170.73 -0.57 -10.06 16 16 C 0.62 10.30 7.91 -12.45 -0.10 10.20 16 17 O -0.54 -10.52 17.15 5.29 0.09 -10.43 16 18 C 0.02 0.27 6.82 -83.44 -0.57 -0.30 16 19 C -0.02 -0.21 11.47 -16.21 -0.19 -0.39 16 20 N -0.37 -3.44 2.93 -62.37 -0.18 -3.62 16 21 C 0.06 0.32 10.93 -16.59 -0.18 0.13 16 22 C -0.14 -0.55 9.98 -39.90 -0.40 -0.95 16 23 C -0.10 -0.46 10.06 -39.54 -0.40 -0.86 16 24 C -0.07 -0.51 10.11 -39.30 -0.40 -0.91 16 25 C 0.22 2.34 7.79 -156.03 -1.22 1.12 16 26 N -0.46 -5.93 8.33 -9.35 -0.08 -6.01 16 27 C 0.12 2.04 6.04 -2.89 -0.02 2.03 16 28 C 0.15 3.16 6.37 -3.42 -0.02 3.14 16 29 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 30 H 0.02 0.56 5.56 -51.93 -0.29 0.27 16 31 H 0.06 1.38 6.65 -51.93 -0.35 1.04 16 32 H 0.08 1.19 7.90 -51.93 -0.41 0.78 16 33 H 0.07 0.96 7.65 -51.93 -0.40 0.57 16 34 H 0.08 1.02 7.41 -51.93 -0.38 0.64 16 35 H 0.08 0.91 7.62 -51.93 -0.40 0.51 16 36 H 0.11 1.41 5.48 -51.93 -0.28 1.13 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.20 1.81 8.06 -52.48 -0.42 1.38 16 39 H 0.17 0.43 8.06 -52.49 -0.42 0.01 16 40 H 0.15 0.13 8.06 -52.49 -0.42 -0.30 16 41 H 0.14 0.23 8.06 -52.49 -0.42 -0.19 16 42 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.07 1.09 7.59 -51.93 -0.39 0.70 16 44 H 0.09 1.76 7.41 -51.93 -0.38 1.37 16 45 H 0.04 0.75 7.48 -51.93 -0.39 0.36 16 46 H 0.03 0.70 7.63 -51.93 -0.40 0.31 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -37.28 364.45 -9.57 -46.84 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.22 Total: -2.34 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -4.20 Total: 4.81 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -0.60 Total: -63.73 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.13 Total: 19.35 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.28 -9.57 -46.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041813803.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.772 kcal (2) G-P(sol) polarization free energy of solvation -37.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds