Wall clock time and date at job start Sat Apr 11 2020 06:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99904 * 2 1 4 4 H 1.48497 * 109.46983 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47425 * 299.99863 * 3 2 1 6 6 H 1.48505 * 109.47175 * 59.99610 * 3 2 1 7 7 C 1.38813 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99647 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.47437 * 126.05712 * 0.03287 * 9 7 2 11 11 C 1.54509 * 107.14580 * 181.59605 * 10 9 7 12 12 C 1.56025 * 102.61127 * 22.84367 * 11 10 9 13 13 H 1.09001 * 112.85892 * 202.92742 * 12 11 10 14 14 C 1.53096 * 106.39338 * 78.38318 * 12 11 10 15 15 C 1.53339 * 110.49916 * 195.28898 * 14 12 11 16 16 N 1.47155 * 107.71287 * 57.57424 * 15 14 12 17 17 C 1.34767 * 121.21459 * 122.69352 * 16 15 14 18 18 O 1.21546 * 119.99944 * 190.91249 * 17 16 15 19 19 C 1.47948 * 120.00480 * 10.90710 * 17 16 15 20 20 C 1.39791 * 119.32576 * 188.41863 * 19 17 16 21 21 C 1.37014 * 119.45801 * 180.02562 * 20 19 17 22 22 C 1.39766 * 118.23628 * 0.02562 * 21 20 19 23 23 C 1.46155 * 134.24697 * 179.97438 * 22 21 20 24 24 C 1.34434 * 106.92195 * 180.02562 * 23 22 21 25 25 N 1.36724 * 110.00222 * 359.97438 * 24 23 22 26 26 H 0.97001 * 124.99318 * 180.02562 * 25 24 23 27 27 C 1.37552 * 110.00239 * 0.02562 * 25 24 23 28 28 N 1.32176 * 133.20116 * 179.71198 * 27 25 24 29 29 C 1.46760 * 117.57227 * 302.41823 * 16 15 14 30 30 C 1.46464 * 126.06138 * 179.97438 * 9 7 2 31 31 H 1.08997 * 108.42310 * 269.26869 * 30 9 7 32 32 H 0.96997 * 119.99978 * 0.02562 * 1 2 3 33 33 H 1.08999 * 109.90872 * 300.97186 * 10 9 7 34 34 H 1.09001 * 109.90383 * 62.22088 * 10 9 7 35 35 H 1.08999 * 110.78123 * 141.12547 * 11 10 9 36 36 H 1.09002 * 110.77894 * 264.56332 * 11 10 9 37 37 H 1.09003 * 109.25696 * 315.69690 * 14 12 11 38 38 H 1.08999 * 109.25918 * 75.17454 * 14 12 11 39 39 H 1.08996 * 109.91062 * 298.02590 * 15 14 12 40 40 H 1.08998 * 109.87122 * 177.09527 * 15 14 12 41 41 H 1.08001 * 120.26691 * 0.02562 * 20 19 17 42 42 H 1.08003 * 120.88040 * 179.97438 * 21 20 19 43 43 H 1.08004 * 126.53990 * 359.97438 * 23 22 21 44 44 H 1.08001 * 124.99215 * 179.97438 * 24 23 22 45 45 H 1.08994 * 109.23043 * 173.11003 * 29 16 15 46 46 H 1.09007 * 109.22812 * 292.51283 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1405 -2.5437 -0.0007 11 6 -0.4377 -4.0593 0.0410 12 6 0.8715 -4.6465 0.6539 13 1 1.0212 -5.6972 0.4054 14 6 0.7947 -4.3920 2.1616 15 6 2.1721 -4.5800 2.8087 16 7 3.1080 -3.6585 2.1451 17 6 3.8001 -2.7400 2.8477 18 8 4.4115 -1.8647 2.2670 19 6 3.8155 -2.7970 4.3260 20 6 4.3858 -1.7431 5.0459 21 6 4.4020 -1.7933 6.4150 22 6 3.8415 -2.9094 7.0425 23 6 3.6725 -3.3185 8.4354 24 6 3.0527 -4.5114 8.4204 25 7 2.8117 -4.8970 7.1310 26 1 2.3744 -5.7225 6.8698 27 6 3.2805 -3.9421 6.2589 28 7 3.2928 -3.8489 4.9405 29 6 3.2651 -3.7804 0.6910 30 6 1.9200 -3.7267 0.0005 31 1 2.0477 -4.0469 -1.0335 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5660 -2.0579 0.8774 34 1 -0.5591 -2.1083 -0.9081 35 1 -1.2931 -4.2682 0.6834 36 1 -0.6030 -4.4487 -0.9636 37 1 0.4483 -3.3735 2.3370 38 1 0.0905 -5.0933 2.6092 39 1 2.5086 -5.6078 2.6733 40 1 2.1169 -4.3465 3.8720 41 1 4.8101 -0.8963 4.5270 42 1 4.8370 -0.9920 6.9940 43 1 3.9865 -2.7680 9.3099 44 1 2.7847 -5.0811 9.2979 45 1 3.8879 -2.9631 0.3275 46 1 3.7483 -4.7299 0.4604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042102148.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:32 Heat of formation + Delta-G solvation = 96.816152 kcal Electronic energy + Delta-G solvation = -30772.130072 eV Core-core repulsion = 26857.134653 eV Total energy + Delta-G solvation = -3914.995419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.71296 -39.90499 -38.37879 -37.15091 -34.95157 -33.16929 -32.68981 -31.03361 -30.22753 -29.86153 -28.64065 -28.22141 -25.01113 -24.35726 -23.60774 -22.61671 -22.31684 -21.01303 -20.02774 -19.84962 -18.57770 -18.33741 -17.03387 -16.51863 -16.37526 -15.48120 -15.41867 -14.89951 -14.75827 -14.46589 -14.31781 -14.03947 -13.79466 -13.53455 -13.49804 -13.18288 -12.99390 -12.68233 -12.43892 -12.15663 -12.09866 -11.83874 -11.41403 -11.27043 -11.17893 -10.76619 -10.70685 -10.64311 -10.54675 -10.01178 -9.85734 -9.75969 -9.73249 -9.54866 -9.37634 -8.72262 -8.56846 -8.43091 -8.24567 -7.92995 -6.65859 -5.53537 -2.84867 0.60004 1.26480 2.39520 2.53109 3.17588 3.47316 3.54219 3.60431 3.67614 4.05410 4.28264 4.49319 4.58860 4.68220 4.88701 5.08507 5.12977 5.23835 5.38448 5.46518 5.49747 5.60361 5.67523 5.68738 5.75173 5.86410 5.95320 6.03728 6.08797 6.17268 6.21912 6.24707 6.34052 6.35341 6.39501 6.52478 6.53506 6.63646 6.71958 6.82573 6.85808 7.01667 7.09580 7.28783 7.71374 7.73467 7.74890 8.01481 8.03342 8.40579 8.70080 9.40309 10.01124 10.65336 11.59195 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012256 B = 0.004356 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.029464 B = 6425.964789 C = 7661.294200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.011 4.011 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.206 4.206 8 H 0.085 0.915 9 N -0.588 5.588 10 C 0.179 3.821 11 C -0.145 4.145 12 C -0.103 4.103 13 H 0.073 0.927 14 C -0.122 4.122 15 C 0.083 3.917 16 N -0.573 5.573 17 C 0.572 3.428 18 O -0.519 6.519 19 C 0.135 3.865 20 C -0.140 4.140 21 C -0.036 4.036 22 C -0.139 4.139 23 C -0.200 4.200 24 C 0.067 3.933 25 N -0.581 5.581 26 H 0.421 0.579 27 C 0.274 3.726 28 N -0.459 5.459 29 C 0.112 3.888 30 C 0.155 3.845 31 H 0.025 0.975 32 H 0.247 0.753 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.135 0.865 41 H 0.151 0.849 42 H 0.140 0.860 43 H 0.151 0.849 44 H 0.178 0.822 45 H 0.095 0.905 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.814 -13.467 16.691 21.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.335 4.335 8 H 0.102 0.898 9 N -0.313 5.313 10 C 0.055 3.945 11 C -0.183 4.183 12 C -0.123 4.123 13 H 0.091 0.909 14 C -0.160 4.160 15 C -0.040 4.040 16 N -0.304 5.304 17 C 0.357 3.643 18 O -0.394 6.394 19 C -0.011 4.011 20 C -0.162 4.162 21 C -0.063 4.063 22 C -0.146 4.146 23 C -0.226 4.226 24 C -0.060 4.060 25 N -0.188 5.188 26 H 0.258 0.742 27 C 0.040 3.960 28 N -0.176 5.176 29 C -0.011 4.011 30 C 0.046 3.954 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.151 0.849 41 H 0.169 0.831 42 H 0.158 0.842 43 H 0.169 0.831 44 H 0.195 0.805 45 H 0.113 0.887 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.691 -13.545 15.871 21.386 hybrid contribution 0.232 1.062 0.351 1.142 sum 4.923 -12.483 16.222 21.053 Atomic orbital electron populations 1.69981 1.04811 1.24455 1.58490 1.24696 0.95556 0.97429 1.02908 0.86106 0.79390 0.84134 0.76806 1.20106 1.22211 1.22117 1.19148 0.90750 0.81937 1.41625 0.89757 1.44316 1.01387 0.99317 1.86328 1.21202 0.84406 0.88224 1.00698 1.23174 0.96209 0.99825 0.99078 1.22407 0.97016 0.97580 0.95264 0.90859 1.21947 0.96419 1.02738 0.94919 1.22832 0.88014 0.92103 1.01048 1.47556 1.41192 1.34013 1.07602 1.17604 0.80409 0.81544 0.84725 1.90807 1.45479 1.33528 1.69569 1.21106 0.95617 0.90063 0.94355 1.21591 1.00676 0.99955 0.93963 1.20680 0.95821 0.96032 0.93732 1.20049 1.03609 0.96225 0.94715 1.21661 1.08415 0.97584 0.94930 1.21909 1.00899 0.97230 0.85984 1.41519 1.53066 1.19884 1.04317 0.74177 1.18543 0.98794 0.90089 0.88603 1.66593 1.18195 1.25647 1.07116 1.21453 0.99120 1.01313 0.79257 1.20689 0.91146 0.87865 0.95656 0.95743 0.94263 0.93811 0.94176 0.92467 0.92868 0.90527 0.92609 0.92793 0.84899 0.83086 0.84201 0.83128 0.80467 0.88703 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.39 10.38 55.49 0.58 -27.82 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.90 23.98 29.55 -169.99 -5.02 18.96 16 4 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 6 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 7 C -0.21 -5.94 9.70 -15.06 -0.15 -6.09 16 8 H 0.08 2.48 6.45 -52.49 -0.34 2.14 16 9 N -0.59 -15.13 3.20 -164.39 -0.53 -15.66 16 10 C 0.18 4.45 4.61 -2.74 -0.01 4.44 16 11 C -0.14 -2.76 6.33 -24.32 -0.15 -2.91 16 12 C -0.10 -1.82 3.68 -88.42 -0.32 -2.14 16 13 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 14 C -0.12 -2.10 5.06 -26.51 -0.13 -2.23 16 15 C 0.08 1.34 5.93 -3.51 -0.02 1.32 16 16 N -0.57 -11.00 2.96 -174.85 -0.52 -11.52 16 17 C 0.57 11.70 7.64 -12.29 -0.09 11.61 16 18 O -0.52 -12.24 15.75 5.33 0.08 -12.15 16 19 C 0.13 2.33 6.58 -82.99 -0.55 1.79 16 20 C -0.14 -2.14 9.55 -39.45 -0.38 -2.52 16 21 C -0.04 -0.45 10.17 -39.45 -0.40 -0.85 16 22 C -0.14 -1.70 6.39 -105.00 -0.67 -2.37 16 23 C -0.20 -1.75 11.08 -37.75 -0.42 -2.17 16 24 C 0.07 0.46 11.81 -16.71 -0.20 0.26 16 25 N -0.58 -5.11 6.05 -12.10 -0.07 -5.18 16 26 H 0.42 2.61 8.96 -40.82 -0.37 2.25 16 27 C 0.27 3.54 8.43 -155.80 -1.31 2.23 16 28 N -0.46 -6.97 6.20 -8.82 -0.05 -7.03 16 29 C 0.11 2.20 5.69 -4.76 -0.03 2.17 16 30 C 0.15 3.24 2.97 -68.28 -0.20 3.03 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.04 1.21 7.04 -51.93 -0.37 0.85 16 34 H 0.04 1.11 7.57 -51.93 -0.39 0.71 16 35 H 0.06 1.00 7.97 -51.93 -0.41 0.58 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.64 6.85 -51.93 -0.36 1.28 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.13 2.14 4.12 -78.97 -0.33 1.81 16 41 H 0.15 2.31 7.63 -52.49 -0.40 1.91 16 42 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 44 H 0.18 0.47 8.06 -52.49 -0.42 0.04 16 45 H 0.09 2.13 5.54 -51.93 -0.29 1.84 16 46 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 LS Contribution 360.01 15.07 5.43 5.43 Total: -1.00 -35.66 360.01 -11.43 -47.09 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.19 Total: 2.73 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -5.14 Total: 5.14 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -0.59 Total: -67.20 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -5.02 Total: 18.96 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.66 -11.43 -47.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042102148.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.909 kcal (2) G-P(sol) polarization free energy of solvation -35.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds