Wall clock time and date at job start Sat Apr 11 2020 06:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99792 * 2 1 4 4 H 1.48507 * 109.46980 * 239.99656 * 3 2 1 5 5 H 1.48494 * 109.47464 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47088 * 120.00073 * 3 2 1 7 7 C 1.38815 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00184 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00072 * 0.02562 * 7 2 1 10 10 C 1.48161 * 126.39262 * 0.02562 * 9 7 2 11 11 C 1.55303 * 107.04077 * 175.02329 * 10 9 7 12 12 C 1.53701 * 101.84700 * 337.53927 * 11 10 9 13 13 H 1.09009 * 111.09985 * 281.42377 * 12 11 10 14 14 C 1.51971 * 115.01595 * 153.49526 * 12 11 10 15 15 C 1.53879 * 107.29034 * 184.53730 * 14 12 11 16 16 N 1.46599 * 110.70794 * 51.81164 * 15 14 12 17 17 C 1.34773 * 119.75675 * 132.27802 * 16 15 14 18 18 O 1.21550 * 119.99599 * 352.97586 * 17 16 15 19 19 C 1.47943 * 120.00425 * 172.97979 * 17 16 15 20 20 C 1.39797 * 119.32221 * 164.48051 * 19 17 16 21 21 C 1.37005 * 119.45924 * 179.97438 * 20 19 17 22 22 C 1.39782 * 118.23591 * 359.97438 * 21 20 19 23 23 C 1.46150 * 134.24443 * 179.97438 * 22 21 20 24 24 C 1.34427 * 106.91996 * 180.02562 * 23 22 21 25 25 N 1.36732 * 110.00241 * 359.97438 * 24 23 22 26 26 H 0.97000 * 124.99193 * 180.02562 * 25 24 23 27 27 C 1.37552 * 110.00217 * 0.02562 * 25 24 23 28 28 N 1.32173 * 133.19994 * 180.30169 * 27 25 24 29 29 C 1.47899 * 119.97787 * 311.81019 * 16 15 14 30 30 C 1.45505 * 126.40041 * 180.02562 * 9 7 2 31 31 H 1.08996 * 109.57815 * 93.34490 * 30 9 7 32 32 H 0.97001 * 120.00198 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.91944 * 55.68282 * 10 9 7 34 34 H 1.08997 * 110.09312 * 294.46805 * 10 9 7 35 35 H 1.08998 * 110.95801 * 95.68199 * 11 10 9 36 36 H 1.08995 * 110.96259 * 219.38982 * 11 10 9 37 37 H 1.08997 * 109.88799 * 303.98666 * 14 12 11 38 38 H 1.09009 * 109.89334 * 65.08848 * 14 12 11 39 39 H 1.08999 * 109.23249 * 172.12292 * 15 14 12 40 40 H 1.09004 * 109.23069 * 291.49406 * 15 14 12 41 41 H 1.07999 * 120.26715 * 0.02562 * 20 19 17 42 42 H 1.07997 * 120.88378 * 179.97438 * 21 20 19 43 43 H 1.07995 * 126.53939 * 0.06373 * 23 22 21 44 44 H 1.07997 * 125.00383 * 179.97438 * 24 23 22 45 45 H 1.09000 * 110.46043 * 292.89499 * 29 16 15 46 46 H 1.08991 * 109.63127 * 171.35775 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1467 -2.5531 -0.0005 11 6 -0.4341 -4.0739 -0.1289 12 6 0.8685 -4.5889 -0.7617 13 1 0.8925 -4.3841 -1.8321 14 6 1.1968 -6.0426 -0.4638 15 6 2.5766 -6.3351 -1.0789 16 7 3.5599 -5.3387 -0.6438 17 6 4.7628 -5.7407 -0.1878 18 8 4.9838 -6.9237 -0.0178 19 6 5.8141 -4.7421 0.1058 20 6 6.9208 -5.1184 0.8725 21 6 7.8964 -4.1961 1.1457 22 6 7.7432 -2.9020 0.6399 23 6 8.5390 -1.6783 0.7117 24 6 7.8730 -0.7373 0.0204 25 7 6.7165 -1.2609 -0.4876 26 1 6.0719 -0.7713 -1.0220 27 6 6.6019 -2.5840 -0.1293 28 7 5.6911 -3.5110 -0.3702 29 6 3.2337 -3.8979 -0.7160 30 6 1.9083 -3.7214 0.0016 31 1 1.9988 -4.0796 1.0270 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5795 -2.0207 -0.8475 34 1 -0.5668 -2.1731 0.9307 35 1 -0.5963 -4.5241 0.8505 36 1 -1.2850 -4.2559 -0.7853 37 1 1.2297 -6.2019 0.6139 38 1 0.4452 -6.6921 -0.9129 39 1 2.9066 -7.3256 -0.7657 40 1 2.4977 -6.3108 -2.1658 41 1 7.0064 -6.1282 1.2458 42 1 8.7608 -4.4618 1.7360 43 1 9.4825 -1.5539 1.2222 44 1 8.2027 0.2823 -0.1141 45 1 3.1415 -3.5797 -1.7545 46 1 4.0105 -3.3210 -0.2145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042102149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:36 Heat of formation + Delta-G solvation = 92.189163 kcal Electronic energy + Delta-G solvation = -30551.692177 eV Core-core repulsion = 26636.496116 eV Total energy + Delta-G solvation = -3915.196060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.65077 -40.11376 -38.43906 -37.35331 -35.19937 -33.44545 -32.70588 -31.33819 -30.16929 -29.64833 -29.00894 -28.31730 -25.16855 -24.36725 -23.38615 -22.99822 -21.80529 -20.87148 -20.14629 -19.82433 -19.15716 -18.49836 -17.13453 -16.68708 -16.41236 -15.70052 -15.38996 -14.90847 -14.80617 -14.60428 -14.47737 -14.16748 -13.94358 -13.56314 -13.40984 -13.36684 -13.13221 -12.90579 -12.44131 -12.23623 -12.09274 -11.94708 -11.79114 -11.50811 -11.28860 -10.92055 -10.81338 -10.69459 -10.51981 -10.24829 -10.17616 -10.04048 -9.79347 -9.73200 -9.59382 -8.73008 -8.65445 -8.53992 -8.30352 -8.09767 -6.86251 -5.74747 -3.07485 0.62205 1.27623 2.48305 2.68535 2.98080 3.20618 3.29841 3.34366 3.38571 3.94931 4.27560 4.44162 4.55770 4.65301 4.82941 5.08169 5.09126 5.16955 5.26016 5.26289 5.43624 5.50824 5.62252 5.65359 5.70062 5.74436 5.85818 5.87216 6.00786 6.12117 6.13666 6.22395 6.24126 6.28872 6.30476 6.39216 6.50640 6.59935 6.67089 6.73045 6.82534 7.01153 7.12000 7.20358 7.51161 7.60543 7.63022 7.78542 7.84005 8.21306 8.33942 9.16101 9.79468 10.48893 11.37798 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008336 B = 0.005906 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.111632 B = 4739.578777 C = 7836.880348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.221 4.221 8 H 0.075 0.925 9 N -0.591 5.591 10 C 0.178 3.822 11 C -0.138 4.138 12 C -0.114 4.114 13 H 0.076 0.924 14 C -0.117 4.117 15 C 0.109 3.891 16 N -0.584 5.584 17 C 0.573 3.427 18 O -0.547 6.547 19 C 0.117 3.883 20 C -0.142 4.142 21 C -0.040 4.040 22 C -0.133 4.133 23 C -0.207 4.207 24 C 0.077 3.923 25 N -0.576 5.576 26 H 0.426 0.574 27 C 0.279 3.721 28 N -0.446 5.446 29 C 0.093 3.907 30 C 0.152 3.848 31 H 0.022 0.978 32 H 0.253 0.747 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.152 0.848 44 H 0.179 0.821 45 H 0.068 0.932 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.911 -6.509 -0.704 14.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.350 4.350 8 H 0.093 0.907 9 N -0.316 5.316 10 C 0.054 3.946 11 C -0.177 4.177 12 C -0.134 4.134 13 H 0.095 0.905 14 C -0.156 4.156 15 C -0.013 4.013 16 N -0.315 5.315 17 C 0.360 3.640 18 O -0.425 6.425 19 C -0.030 4.030 20 C -0.165 4.165 21 C -0.066 4.066 22 C -0.140 4.140 23 C -0.233 4.233 24 C -0.051 4.051 25 N -0.181 5.181 26 H 0.265 0.735 27 C 0.044 3.956 28 N -0.162 5.162 29 C -0.029 4.029 30 C 0.043 3.957 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.165 0.835 42 H 0.157 0.843 43 H 0.169 0.831 44 H 0.196 0.804 45 H 0.086 0.914 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.138 -6.526 -1.212 13.834 hybrid contribution 0.632 1.228 0.198 1.395 sum 12.770 -5.298 -1.014 13.863 Atomic orbital electron populations 1.69922 1.04805 1.25060 1.56998 1.24767 0.95653 0.97428 1.02552 0.86295 0.78669 0.83771 0.77596 1.21325 1.21532 1.21293 1.18900 0.90112 0.82337 1.43621 0.90743 1.44118 1.01630 0.99170 1.86658 1.21525 0.83666 0.88561 1.00874 1.22732 0.96108 0.99567 0.99269 1.22305 0.97313 0.93657 1.00110 0.90543 1.21775 0.95393 0.97149 1.01249 1.21632 0.88506 0.92599 0.98567 1.48164 1.13283 1.08735 1.61318 1.17836 0.81915 0.87006 0.77291 1.90739 1.80817 1.16647 1.54266 1.20775 0.95322 0.89336 0.97524 1.21450 0.93730 1.01366 0.99934 1.20619 0.98460 0.90496 0.97050 1.20079 0.96813 0.95336 1.01821 1.21615 1.02254 0.91258 1.08124 1.21996 0.86183 0.99376 0.97554 1.41684 1.21388 1.07798 1.47255 0.73529 1.18456 0.92705 0.86520 0.97932 1.66752 1.26010 1.00234 1.23192 1.22752 0.99948 0.78148 1.02054 1.21071 0.91696 0.87387 0.95528 0.96105 0.93708 0.92725 0.94523 0.92617 0.92308 0.91482 0.90936 0.89355 0.91853 0.83506 0.84268 0.83074 0.80354 0.91357 0.85249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 10.44 55.49 0.58 -25.93 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.20 29.55 -169.99 -5.02 16.17 16 4 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.22 -5.92 9.88 -15.06 -0.15 -6.07 16 8 H 0.07 1.92 7.43 -52.49 -0.39 1.53 16 9 N -0.59 -14.74 3.35 -162.88 -0.55 -15.28 16 10 C 0.18 4.29 5.45 -1.91 -0.01 4.28 16 11 C -0.14 -2.60 6.54 -25.15 -0.16 -2.77 16 12 C -0.11 -2.04 2.60 -89.48 -0.23 -2.28 16 13 H 0.08 1.41 8.12 -51.92 -0.42 0.99 16 14 C -0.12 -1.73 5.72 -26.80 -0.15 -1.88 16 15 C 0.11 1.65 6.35 -3.53 -0.02 1.62 16 16 N -0.58 -10.13 3.00 -173.75 -0.52 -10.65 16 17 C 0.57 10.13 7.60 -12.29 -0.09 10.03 16 18 O -0.55 -10.25 15.73 5.32 0.08 -10.17 16 19 C 0.12 1.93 6.46 -82.99 -0.54 1.40 16 20 C -0.14 -1.96 9.55 -39.45 -0.38 -2.34 16 21 C -0.04 -0.48 10.17 -39.45 -0.40 -0.88 16 22 C -0.13 -1.76 6.39 -105.00 -0.67 -2.43 16 23 C -0.21 -2.14 11.08 -37.75 -0.42 -2.56 16 24 C 0.08 0.75 11.81 -16.71 -0.20 0.55 16 25 N -0.58 -7.27 6.05 -12.10 -0.07 -7.34 16 26 H 0.43 5.04 8.96 -40.82 -0.37 4.67 16 27 C 0.28 4.24 8.43 -155.80 -1.31 2.92 16 28 N -0.45 -7.54 6.29 -8.82 -0.06 -7.59 16 29 C 0.09 1.79 5.01 -3.91 -0.02 1.77 16 30 C 0.15 3.19 2.79 -67.80 -0.19 3.00 16 31 H 0.02 0.49 7.93 -51.93 -0.41 0.07 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.05 1.45 7.21 -51.93 -0.37 1.07 16 34 H 0.04 0.97 7.77 -51.93 -0.40 0.57 16 35 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.03 7.98 -51.93 -0.41 0.62 16 38 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 39 H 0.09 1.31 6.92 -51.93 -0.36 0.95 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.15 1.83 7.69 -52.49 -0.40 1.42 16 42 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 46 H 0.13 2.61 4.06 -70.85 -0.29 2.33 16 LS Contribution 364.30 15.07 5.49 5.49 Total: -1.00 -32.47 364.30 -11.46 -43.93 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.35 Total: 7.31 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -5.04 Total: 4.06 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: -0.62 Total: -66.80 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.47 -11.46 -43.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042102149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.123 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds