Wall clock time and date at job start Sat Apr 11 2020 06:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00196 * 2 1 4 4 H 1.48496 * 109.47225 * 239.99856 * 3 2 1 5 5 H 1.48495 * 109.47288 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47232 * 120.00058 * 3 2 1 7 7 C 1.38812 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99827 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00562 * 0.02562 * 7 2 1 10 10 C 1.48165 * 126.39310 * 359.97438 * 9 7 2 11 11 C 1.55306 * 107.04052 * 185.02407 * 10 9 7 12 12 C 1.53556 * 101.84313 * 22.46381 * 11 10 9 13 13 H 1.09002 * 111.70808 * 78.84411 * 12 11 10 14 14 C 1.51973 * 115.06321 * 206.60665 * 12 11 10 15 15 C 1.53889 * 107.35683 * 175.39965 * 14 12 11 16 16 N 1.46590 * 110.70798 * 308.15160 * 15 14 12 17 17 C 1.34778 * 119.75333 * 227.74593 * 16 15 14 18 18 O 1.21546 * 119.99958 * 0.13731 * 17 16 15 19 19 C 1.47950 * 120.00137 * 180.13629 * 17 16 15 20 20 C 1.39797 * 119.31991 * 202.68118 * 19 17 16 21 21 C 1.37018 * 119.45414 * 179.74290 * 20 19 17 22 22 C 1.39772 * 118.23472 * 0.49706 * 21 20 19 23 23 C 1.46157 * 134.24327 * 179.73491 * 22 21 20 24 24 C 1.34431 * 106.91937 * 180.02562 * 23 22 21 25 25 N 1.36727 * 110.00414 * 0.02562 * 24 23 22 26 26 H 0.96998 * 124.99547 * 179.97438 * 25 24 23 27 27 C 1.37560 * 110.00232 * 359.97438 * 25 24 23 28 28 N 1.32164 * 133.20100 * 179.97438 * 27 25 24 29 29 C 1.47799 * 120.49527 * 47.72240 * 16 15 14 30 30 C 1.45502 * 126.40167 * 179.97438 * 9 7 2 31 31 H 1.09004 * 109.56814 * 265.82552 * 30 9 7 32 32 H 0.96998 * 119.99587 * 0.02562 * 1 2 3 33 33 H 1.09005 * 109.91805 * 304.36510 * 10 9 7 34 34 H 1.08992 * 109.92285 * 65.47507 * 10 9 7 35 35 H 1.09001 * 110.96038 * 140.57288 * 11 10 9 36 36 H 1.09000 * 110.95647 * 264.27689 * 11 10 9 37 37 H 1.09003 * 109.89248 * 55.91381 * 14 12 11 38 38 H 1.08998 * 109.89518 * 294.88725 * 14 12 11 39 39 H 1.08998 * 109.22280 * 68.46413 * 15 14 12 40 40 H 1.09000 * 109.22878 * 187.87183 * 15 14 12 41 41 H 1.07997 * 120.26792 * 359.97438 * 20 19 17 42 42 H 1.07998 * 120.87867 * 180.28274 * 21 20 19 43 43 H 1.08000 * 126.53627 * 0.02562 * 23 22 21 44 44 H 1.08001 * 124.99635 * 180.02562 * 24 23 22 45 45 H 1.09001 * 110.06056 * 67.98216 * 29 16 15 46 46 H 1.08998 * 110.06896 * 189.54103 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1469 -2.5531 0.0005 11 6 -0.4345 -4.0737 0.1306 12 6 0.8663 -4.5874 0.7646 13 1 0.8977 -4.3903 1.8362 14 6 1.1973 -6.0406 0.4677 15 6 2.5772 -6.3323 1.0833 16 7 3.5601 -5.3357 0.6479 17 6 4.7631 -5.7376 0.1920 18 8 5.0286 -6.9226 0.1406 19 6 5.7604 -4.7364 -0.2460 20 6 6.7711 -5.1194 -1.1326 21 6 7.6930 -4.1931 -1.5442 22 6 7.5897 -2.8911 -1.0465 23 6 8.3584 -1.6626 -1.2369 24 6 7.7730 -0.7143 -0.4851 25 7 6.6932 -1.2376 0.1705 26 1 6.1143 -0.7433 0.7717 27 6 6.5486 -2.5679 -0.1481 28 7 5.6809 -3.4962 0.2154 29 6 3.2417 -3.8936 0.7047 30 6 1.9080 -3.7214 0.0005 31 1 1.9857 -4.0859 -1.0238 32 1 -0.4849 0.8401 -0.0004 33 1 -0.5804 -2.0195 0.8465 34 1 -0.5633 -2.1717 -0.9317 35 1 -1.2856 -4.2549 0.7870 36 1 -0.5965 -4.5249 -0.8483 37 1 1.2306 -6.2006 -0.6100 38 1 0.4462 -6.6911 0.9158 39 1 2.4978 -6.3073 2.1701 40 1 2.9079 -7.3226 0.7702 41 1 6.8225 -6.1361 -1.4931 42 1 8.4807 -4.4628 -2.2321 43 1 9.2303 -1.5402 -1.8623 44 1 8.1066 0.3101 -0.4099 45 1 3.1617 -3.5689 1.7421 46 1 4.0127 -3.3198 0.1905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042102151.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:43 Heat of formation + Delta-G solvation = 92.366556 kcal Electronic energy + Delta-G solvation = -30590.644451 eV Core-core repulsion = 26675.456083 eV Total energy + Delta-G solvation = -3915.188368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.65094 -40.12055 -38.43529 -37.35834 -35.20087 -33.45331 -32.71706 -31.34858 -30.17086 -29.63959 -29.01074 -28.31779 -25.17058 -24.37208 -23.37585 -23.01547 -21.81053 -20.86778 -20.15530 -19.82896 -19.14524 -18.49608 -17.15074 -16.68822 -16.40501 -15.76011 -15.36782 -14.92404 -14.82002 -14.59999 -14.47253 -14.13057 -13.95930 -13.55306 -13.41447 -13.35412 -13.14156 -12.90778 -12.42768 -12.27723 -12.09993 -11.94243 -11.77624 -11.50820 -11.29217 -10.92515 -10.81655 -10.70141 -10.51507 -10.25227 -10.17578 -10.05041 -9.79161 -9.74004 -9.59708 -8.72606 -8.65572 -8.54359 -8.30635 -8.08954 -6.86367 -5.74994 -3.07681 0.64208 1.28251 2.48791 2.68700 2.97446 3.20652 3.29926 3.33709 3.38350 3.92913 4.28098 4.44190 4.56105 4.66117 4.83358 5.07607 5.09307 5.16773 5.25902 5.26164 5.43144 5.51304 5.62238 5.64543 5.70141 5.74086 5.85840 5.87005 6.00179 6.11643 6.13980 6.21992 6.23073 6.29207 6.29944 6.39730 6.50747 6.59494 6.66903 6.72802 6.82492 7.01571 7.10812 7.20519 7.50715 7.60179 7.62252 7.78309 7.84097 8.21183 8.33644 9.15842 9.79210 10.48630 11.37563 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008265 B = 0.006014 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3386.999153 B = 4654.389878 C = 7748.635284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.221 4.221 8 H 0.075 0.925 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.137 4.137 12 C -0.114 4.114 13 H 0.076 0.924 14 C -0.118 4.118 15 C 0.111 3.889 16 N -0.583 5.583 17 C 0.572 3.428 18 O -0.547 6.547 19 C 0.119 3.881 20 C -0.143 4.143 21 C -0.039 4.039 22 C -0.133 4.133 23 C -0.207 4.207 24 C 0.077 3.923 25 N -0.575 5.575 26 H 0.426 0.574 27 C 0.279 3.721 28 N -0.446 5.446 29 C 0.089 3.911 30 C 0.152 3.848 31 H 0.020 0.980 32 H 0.253 0.747 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.152 0.848 44 H 0.179 0.821 45 H 0.068 0.932 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.528 -6.458 -0.460 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.350 4.350 8 H 0.092 0.908 9 N -0.316 5.316 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.134 4.134 13 H 0.094 0.906 14 C -0.157 4.157 15 C -0.012 4.012 16 N -0.314 5.314 17 C 0.358 3.642 18 O -0.425 6.425 19 C -0.028 4.028 20 C -0.166 4.166 21 C -0.065 4.065 22 C -0.141 4.141 23 C -0.232 4.232 24 C -0.051 4.051 25 N -0.181 5.181 26 H 0.264 0.736 27 C 0.044 3.956 28 N -0.163 5.163 29 C -0.034 4.034 30 C 0.043 3.957 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.164 0.836 42 H 0.157 0.843 43 H 0.169 0.831 44 H 0.196 0.804 45 H 0.087 0.913 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.849 -6.471 0.198 13.503 hybrid contribution 0.581 1.220 -0.250 1.375 sum 12.431 -5.251 -0.052 13.494 Atomic orbital electron populations 1.69925 1.04804 1.25058 1.57002 1.24768 0.95659 0.97432 1.02549 0.86294 0.78689 0.83768 0.77594 1.21302 1.21526 1.21288 1.18897 0.90104 0.82347 1.43618 0.90758 1.44122 1.01641 0.99175 1.86631 1.21539 0.83672 0.88567 1.00899 1.22685 0.96078 0.99556 0.99248 1.22293 0.97355 0.93648 1.00115 0.90571 1.21799 0.95401 0.97256 1.01222 1.21624 0.88382 0.92469 0.98685 1.48171 1.13381 1.08737 1.61103 1.17864 0.81835 0.87038 0.77418 1.90741 1.78767 1.16432 1.56584 1.20754 0.96000 0.89109 0.96940 1.21429 0.94924 1.01290 0.98917 1.20615 0.97954 0.90427 0.97540 1.20067 0.98153 0.95228 1.00617 1.21616 1.03741 0.91014 1.06841 1.21993 0.88312 0.99366 0.95446 1.41675 1.27276 1.07201 1.41955 0.73569 1.18445 0.93844 0.86342 0.96934 1.66675 1.23193 1.00133 1.26265 1.22827 1.00094 0.78197 1.02246 1.21094 0.91633 0.87397 0.95535 0.96246 0.93708 0.92698 0.94492 0.92292 0.92593 0.91530 0.90912 0.91803 0.89353 0.83590 0.84255 0.83068 0.80354 0.91347 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 10.43 55.49 0.58 -25.93 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.18 29.55 -169.99 -5.02 16.15 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.22 -5.92 9.87 -15.06 -0.15 -6.07 16 8 H 0.07 1.91 7.41 -52.49 -0.39 1.52 16 9 N -0.59 -14.73 3.35 -162.80 -0.54 -15.28 16 10 C 0.18 4.27 5.45 -1.90 -0.01 4.26 16 11 C -0.14 -2.58 6.54 -25.22 -0.16 -2.74 16 12 C -0.11 -2.05 2.62 -89.51 -0.23 -2.28 16 13 H 0.08 1.41 8.13 -51.93 -0.42 0.98 16 14 C -0.12 -1.74 5.72 -26.79 -0.15 -1.90 16 15 C 0.11 1.67 6.34 -3.53 -0.02 1.65 16 16 N -0.58 -10.12 3.01 -173.81 -0.52 -10.65 16 17 C 0.57 10.13 7.57 -12.28 -0.09 10.04 16 18 O -0.55 -10.29 15.84 5.33 0.08 -10.20 16 19 C 0.12 1.97 6.40 -82.99 -0.53 1.44 16 20 C -0.14 -1.99 9.55 -39.44 -0.38 -2.36 16 21 C -0.04 -0.47 10.17 -39.45 -0.40 -0.87 16 22 C -0.13 -1.77 6.39 -105.00 -0.67 -2.45 16 23 C -0.21 -2.16 11.08 -37.75 -0.42 -2.58 16 24 C 0.08 0.76 11.81 -16.71 -0.20 0.56 16 25 N -0.58 -7.33 6.05 -12.10 -0.07 -7.40 16 26 H 0.43 5.05 8.96 -40.82 -0.37 4.68 16 27 C 0.28 4.27 8.43 -155.80 -1.31 2.96 16 28 N -0.45 -7.59 6.35 -8.82 -0.06 -7.64 16 29 C 0.09 1.70 5.12 -3.94 -0.02 1.68 16 30 C 0.15 3.19 2.77 -67.74 -0.19 3.01 16 31 H 0.02 0.45 7.90 -51.93 -0.41 0.04 16 32 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.05 1.45 7.21 -51.93 -0.37 1.08 16 34 H 0.04 0.98 7.76 -51.93 -0.40 0.58 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 37 H 0.07 1.02 7.97 -51.93 -0.41 0.60 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.31 6.95 -51.93 -0.36 0.94 16 41 H 0.15 1.81 7.78 -52.49 -0.41 1.41 16 42 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 43 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 44 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.14 2.69 3.88 -75.91 -0.29 2.40 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -32.54 364.35 -11.46 -44.00 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.36 Total: 7.43 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -5.04 Total: 4.02 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: -0.62 Total: -66.89 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.54 -11.46 -44.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042102151.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.371 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds