Wall clock time and date at job start Sat Apr 11 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99819 * 2 1 4 4 H 1.48491 * 109.47415 * 269.99998 * 3 2 1 5 5 H 1.48505 * 109.47246 * 30.00325 * 3 2 1 6 6 H 1.48503 * 109.47042 * 149.99984 * 3 2 1 7 7 C 1.38815 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99880 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00144 * 0.02562 * 7 2 1 10 10 C 1.48158 * 126.39672 * 0.03859 * 9 7 2 11 11 C 1.55299 * 107.04132 * 184.97287 * 10 9 7 12 12 C 1.53697 * 101.81775 * 22.43947 * 11 10 9 13 13 H 1.09004 * 111.10971 * 78.60933 * 12 11 10 14 14 C 1.51979 * 115.00356 * 206.54790 * 12 11 10 15 15 C 1.53888 * 107.29446 * 175.43183 * 14 12 11 16 16 N 1.46630 * 110.79692 * 308.25806 * 15 14 12 17 17 C 1.34774 * 119.78504 * 227.68085 * 16 15 14 18 18 O 1.21774 * 120.00402 * 172.83958 * 17 16 15 19 19 C 1.41819 * 119.99465 * 352.83952 * 17 16 15 20 20 C 1.38521 * 126.78832 * 335.86447 * 19 17 16 21 21 N 1.32339 * 108.21188 * 179.97438 * 20 19 17 22 22 C 1.33191 * 109.81484 * 359.97438 * 21 20 19 23 23 C 1.40657 * 131.81610 * 180.02562 * 22 21 20 24 24 C 1.36287 * 119.38224 * 179.97438 * 23 22 21 25 25 C 1.40173 * 119.61035 * 0.02562 * 24 23 22 26 26 C 1.35259 * 120.12469 * 359.97438 * 25 24 23 27 27 N 1.35957 * 120.63846 * 359.75113 * 26 25 24 28 28 C 1.47802 * 120.46361 * 47.54179 * 16 15 14 29 29 C 1.45503 * 126.39605 * 180.02562 * 9 7 2 30 30 H 1.09008 * 109.56298 * 265.87133 * 29 9 7 31 31 H 0.96998 * 120.00416 * 359.97438 * 1 2 3 32 32 H 1.09007 * 109.91951 * 304.31336 * 10 9 7 33 33 H 1.08994 * 109.92095 * 65.62138 * 10 9 7 34 34 H 1.09004 * 110.96215 * 140.57680 * 11 10 9 35 35 H 1.09001 * 110.95424 * 264.31230 * 11 10 9 36 36 H 1.09005 * 109.89098 * 294.88119 * 14 12 11 37 37 H 1.09004 * 109.88886 * 55.98449 * 14 12 11 38 38 H 1.08996 * 109.22497 * 68.50921 * 15 14 12 39 39 H 1.08997 * 109.22576 * 187.91479 * 15 14 12 40 40 H 1.08001 * 125.89654 * 359.97438 * 20 19 17 41 41 H 1.07998 * 120.30952 * 0.02562 * 23 22 21 42 42 H 1.08001 * 120.19493 * 180.02562 * 24 23 22 43 43 H 1.07997 * 119.93819 * 180.02562 * 25 24 23 44 44 H 1.08003 * 119.67946 * 180.02562 * 26 25 24 45 45 H 1.08999 * 110.06320 * 189.66704 * 28 16 15 46 46 H 1.08991 * 110.06680 * 68.21003 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1468 -2.5532 -0.0008 11 6 -0.4344 -4.0738 0.1285 12 6 0.8676 -4.5875 0.7635 13 1 0.8900 -4.3821 1.8338 14 6 1.1972 -6.0411 0.4666 15 6 2.5767 -6.3326 1.0832 16 7 3.5612 -5.3356 0.6510 17 6 4.7655 -5.7366 0.1978 18 8 5.5361 -4.9255 -0.2832 19 6 5.1352 -7.1032 0.2811 20 6 4.6383 -8.0445 1.1675 21 7 5.2360 -9.1995 0.9224 22 6 6.0990 -9.0571 -0.0820 23 6 6.9648 -9.9698 -0.7111 24 6 7.7544 -9.5441 -1.7371 25 6 7.6928 -8.2057 -2.1492 26 6 6.8537 -7.3432 -1.5315 27 7 6.0585 -7.7610 -0.5110 28 6 3.2412 -3.8937 0.7060 29 6 1.9082 -3.7214 0.0016 30 1 1.9874 -4.0859 -1.0227 31 1 -0.4851 0.8400 0.0004 32 1 -0.5810 -2.0200 0.8450 33 1 -0.5621 -2.1748 -0.9348 34 1 -1.2861 -4.2553 0.7841 35 1 -0.5949 -4.5248 -0.8508 36 1 0.4457 -6.6909 0.9152 37 1 1.2314 -6.2010 -0.6111 38 1 2.4966 -6.3079 2.1699 39 1 2.9079 -7.3227 0.7700 40 1 3.8918 -7.8665 1.9275 41 1 7.0029 -10.9986 -0.3847 42 1 8.4238 -10.2338 -2.2297 43 1 8.3159 -7.8628 -2.9619 44 1 6.8117 -6.3137 -1.8552 45 1 4.0126 -3.3196 0.1927 46 1 3.1608 -3.5677 1.7429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042121313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:57 Heat of formation + Delta-G solvation = 108.230567 kcal Electronic energy + Delta-G solvation = -29902.845112 eV Core-core repulsion = 25988.344659 eV Total energy + Delta-G solvation = -3914.500453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.21705 -40.14769 -38.24331 -37.68228 -35.49346 -33.89896 -32.93530 -31.47237 -30.86566 -30.14058 -28.85092 -28.17776 -25.09518 -24.63993 -24.03333 -22.92398 -22.63377 -21.92424 -20.37119 -19.94218 -19.36842 -17.59963 -17.24911 -17.00575 -16.66175 -16.31980 -15.84129 -15.54820 -15.03797 -14.86499 -14.65003 -14.43321 -14.04094 -13.94134 -13.66251 -13.30061 -12.97231 -12.75575 -12.65800 -12.36627 -12.25155 -12.02982 -11.90642 -11.55285 -11.31625 -11.25151 -10.93972 -10.81286 -10.75578 -10.62341 -10.14360 -9.98554 -9.87089 -9.84987 -9.65102 -9.49069 -9.13798 -8.63398 -8.54210 -8.11302 -6.86087 -5.72211 -3.06029 0.40033 0.57953 2.00534 2.17207 3.11837 3.18083 3.30702 3.41467 3.47113 3.48615 3.83968 4.17356 4.42627 4.49909 4.50889 4.66874 4.75564 4.85884 4.98466 5.00537 5.13505 5.15442 5.37361 5.44492 5.48707 5.60416 5.62056 5.67567 5.75699 5.77299 5.88770 6.00813 6.06036 6.11346 6.11893 6.15834 6.17448 6.35840 6.47675 6.55824 6.65141 6.69896 6.73911 7.04524 7.41049 7.47626 7.55064 7.60840 7.80935 8.18963 8.23384 9.18708 9.81634 10.48303 11.40115 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017535 B = 0.002997 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.408469 B = 9341.447776 C =10463.263214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.114 4.114 13 H 0.079 0.921 14 C -0.118 4.118 15 C 0.089 3.911 16 N -0.592 5.592 17 C 0.591 3.409 18 O -0.552 6.552 19 C -0.133 4.133 20 C 0.095 3.905 21 N -0.496 5.496 22 C 0.239 3.761 23 C -0.091 4.091 24 C -0.088 4.088 25 C -0.147 4.147 26 C 0.077 3.923 27 N -0.323 5.323 28 C 0.120 3.880 29 C 0.157 3.843 30 H 0.023 0.977 31 H 0.252 0.748 32 H 0.056 0.944 33 H 0.037 0.963 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.200 0.800 41 H 0.155 0.845 42 H 0.146 0.854 43 H 0.156 0.844 44 H 0.175 0.825 45 H 0.093 0.907 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.966 -21.448 -0.879 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.134 4.134 13 H 0.097 0.903 14 C -0.157 4.157 15 C -0.034 4.034 16 N -0.324 5.324 17 C 0.380 3.620 18 O -0.432 6.432 19 C -0.248 4.248 20 C -0.064 4.064 21 N -0.215 5.215 22 C -0.002 4.002 23 C -0.111 4.111 24 C -0.112 4.112 25 C -0.167 4.167 26 C -0.047 4.047 27 N 0.007 4.993 28 C -0.002 4.002 29 C 0.048 3.952 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.216 0.784 41 H 0.173 0.827 42 H 0.164 0.836 43 H 0.173 0.827 44 H 0.192 0.808 45 H 0.112 0.888 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.134 -21.395 -0.715 23.684 hybrid contribution 0.475 1.723 -0.439 1.840 sum 10.609 -19.672 -1.154 22.380 Atomic orbital electron populations 1.69940 1.04893 1.25084 1.56961 1.24781 0.95678 0.97645 1.02131 0.86144 0.78681 0.83514 0.77622 1.21606 1.21692 1.20576 1.19044 0.90431 0.82267 1.43924 0.90277 1.44168 1.01664 0.99143 1.86688 1.21549 0.83629 0.88519 1.00993 1.22729 0.96023 0.99620 0.99260 1.22292 0.97419 0.93392 1.00280 0.90312 1.21798 0.95134 0.97486 1.01262 1.22381 0.89524 0.92162 0.99335 1.47955 1.12768 1.08192 1.63532 1.15486 0.82329 0.85376 0.78762 1.90827 1.51406 1.54920 1.46006 1.19962 1.04225 0.96586 1.03985 1.23561 0.97922 0.87005 0.97931 1.70540 1.10546 1.25781 1.14669 1.21115 0.99984 0.83263 0.95793 1.20334 0.95084 0.99313 0.96364 1.21165 0.98276 0.95894 0.95879 1.20954 1.00323 0.93406 1.02033 1.22040 0.91996 1.02014 0.88679 1.42439 1.24821 1.10460 1.21548 1.21759 0.99248 0.77574 1.01634 1.20965 0.90946 0.87679 0.95643 0.95962 0.93748 0.92577 0.94450 0.92168 0.92606 0.90593 0.91461 0.91097 0.88959 0.78387 0.82743 0.83591 0.82671 0.80812 0.88825 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 10.44 55.49 0.58 -26.33 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.31 9.88 -15.06 -0.15 -6.46 16 8 H 0.08 2.14 7.41 -52.49 -0.39 1.75 16 9 N -0.59 -14.82 3.35 -162.93 -0.55 -15.37 16 10 C 0.18 4.22 5.45 -1.91 -0.01 4.21 16 11 C -0.14 -2.48 6.54 -25.15 -0.16 -2.65 16 12 C -0.11 -1.90 2.61 -89.53 -0.23 -2.13 16 13 H 0.08 1.34 8.13 -51.93 -0.42 0.91 16 14 C -0.12 -1.51 5.72 -26.79 -0.15 -1.67 16 15 C 0.09 1.06 4.79 -3.51 -0.02 1.04 16 16 N -0.59 -9.26 3.02 -176.07 -0.53 -9.79 16 17 C 0.59 9.82 7.41 -14.89 -0.11 9.71 16 18 O -0.55 -10.88 15.15 5.12 0.08 -10.80 16 19 C -0.13 -1.90 6.33 -83.47 -0.53 -2.43 16 20 C 0.10 1.17 9.38 -17.23 -0.16 1.01 16 21 N -0.50 -6.48 11.25 -12.27 -0.14 -6.61 16 22 C 0.24 2.90 7.77 -156.07 -1.21 1.68 16 23 C -0.09 -0.77 10.10 -39.37 -0.40 -1.16 16 24 C -0.09 -0.56 10.07 -39.56 -0.40 -0.96 16 25 C -0.15 -1.08 10.00 -39.92 -0.40 -1.48 16 26 C 0.08 0.85 10.55 -16.78 -0.18 0.67 16 27 N -0.32 -4.24 2.96 -60.15 -0.18 -4.42 16 28 C 0.12 2.26 5.70 -3.96 -0.02 2.24 16 29 C 0.16 3.20 2.77 -67.85 -0.19 3.01 16 30 H 0.02 0.50 7.90 -51.92 -0.41 0.09 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.06 1.47 7.21 -51.92 -0.37 1.10 16 33 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.96 8.12 -51.93 -0.42 0.53 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.92 7.97 -51.93 -0.41 0.50 16 38 H 0.07 0.72 7.96 -51.93 -0.41 0.30 16 39 H 0.09 0.98 4.24 -51.93 -0.22 0.76 16 40 H 0.20 1.86 5.84 -52.49 -0.31 1.55 16 41 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.15 0.44 8.06 -52.49 -0.42 0.01 16 43 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.17 2.01 7.14 -52.48 -0.37 1.63 16 45 H 0.09 1.99 6.74 -51.93 -0.35 1.64 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 360.94 15.07 5.44 5.44 Total: -1.00 -34.27 360.94 -10.91 -45.18 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.17 Total: 1.08 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -4.42 Total: 4.37 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -0.81 Total: -62.53 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.27 -10.91 -45.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042121313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.408 kcal (2) G-P(sol) polarization free energy of solvation -34.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds