Wall clock time and date at job start Sat Apr 11 2020 06:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99777 * 2 1 4 4 H 1.48501 * 109.47206 * 274.98663 * 3 2 1 5 5 H 1.48491 * 109.47131 * 34.99157 * 3 2 1 6 6 H 1.48506 * 109.47010 * 154.99005 * 3 2 1 7 7 C 1.38808 * 120.00385 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00575 * 172.56313 * 7 2 1 9 9 N 1.36940 * 119.99975 * 352.56134 * 7 2 1 10 10 C 1.47433 * 126.05527 * 353.93863 * 9 7 2 11 11 C 1.54504 * 107.29572 * 181.51749 * 10 9 7 12 12 C 1.56484 * 102.40109 * 22.91218 * 11 10 9 13 13 H 1.09002 * 113.46605 * 202.60122 * 12 11 10 14 14 C 1.53093 * 106.41982 * 78.36456 * 12 11 10 15 15 C 1.52829 * 110.58407 * 195.41561 * 14 12 11 16 16 N 1.47152 * 107.97916 * 57.33974 * 15 14 12 17 17 C 1.34781 * 121.22002 * 122.72368 * 16 15 14 18 18 O 1.21649 * 120.00027 * 184.70638 * 17 16 15 19 19 C 1.47052 * 119.99752 * 4.70489 * 17 16 15 20 20 C 1.37600 * 119.92943 * 225.90896 * 19 17 16 21 21 C 1.39945 * 120.01499 * 179.97438 * 20 19 17 22 22 C 1.36212 * 119.91572 * 0.02562 * 21 20 19 23 23 C 1.40919 * 119.80403 * 359.97438 * 22 21 20 24 24 N 1.32578 * 132.19053 * 179.97438 * 23 22 21 25 25 C 1.33236 * 109.13998 * 180.02562 * 24 23 22 26 26 C 1.35459 * 108.57842 * 359.97438 * 25 24 23 27 27 N 1.36251 * 107.17744 * 359.76900 * 26 25 24 28 28 C 1.46752 * 117.56090 * 302.69857 * 16 15 14 29 29 C 1.46473 * 126.06163 * 173.94359 * 9 7 2 30 30 H 1.09003 * 108.42178 * 269.26362 * 29 9 7 31 31 H 0.96998 * 120.00086 * 359.97438 * 1 2 3 32 32 H 1.08990 * 109.90789 * 300.98806 * 10 9 7 33 33 H 1.09000 * 109.90320 * 62.05558 * 10 9 7 34 34 H 1.08999 * 110.77801 * 141.22883 * 11 10 9 35 35 H 1.08996 * 110.78594 * 264.66616 * 11 10 9 36 36 H 1.09000 * 109.25173 * 75.13011 * 14 12 11 37 37 H 1.09003 * 109.22134 * 315.67903 * 14 12 11 38 38 H 1.09005 * 109.75939 * 297.72243 * 15 14 12 39 39 H 1.09002 * 109.80543 * 176.98948 * 15 14 12 40 40 H 1.07993 * 119.99592 * 359.96374 * 20 19 17 41 41 H 1.07997 * 120.03974 * 179.97438 * 21 20 19 42 42 H 1.08005 * 120.09752 * 180.02562 * 22 21 20 43 43 H 1.07997 * 125.71364 * 180.02562 * 25 24 23 44 44 H 1.07996 * 126.41367 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.23290 * 292.22641 * 28 16 15 46 46 H 1.09004 * 109.23193 * 172.86176 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4121 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0835 -1.2060 -0.1216 9 7 1.3343 -2.3831 0.1525 10 6 -0.1021 -2.5284 0.4512 11 6 -0.3962 -4.0406 0.5688 12 6 1.0118 -4.6311 0.9116 13 1 1.1129 -5.6867 0.6594 14 6 1.2441 -4.3599 2.4003 15 6 2.7187 -4.5456 2.7566 16 7 3.5089 -3.6418 1.9057 17 6 4.3331 -2.7201 2.4421 18 8 4.9105 -1.9278 1.7218 19 6 4.5343 -2.6721 3.8980 20 6 4.4918 -1.4652 4.5575 21 6 4.6825 -1.4176 5.9431 22 6 4.9107 -2.5671 6.6373 23 6 4.9530 -3.8000 5.9562 24 7 5.1529 -5.0420 6.3747 25 6 5.0983 -5.8687 5.3313 26 6 4.8570 -5.1398 4.2153 27 7 4.7584 -3.8363 4.5996 28 6 3.3670 -3.7811 0.4517 29 6 1.9101 -3.7259 0.0484 30 1 1.8242 -4.0583 -0.9861 31 1 -0.4850 0.8400 0.0004 32 1 -0.3378 -2.0304 1.3916 33 1 -0.6944 -2.0969 -0.3557 34 1 -1.1059 -4.2351 1.3729 35 1 -0.7636 -4.4379 -0.3773 36 1 0.6420 -5.0514 2.9898 37 1 0.9449 -3.3372 2.6297 38 1 3.0151 -5.5782 2.5723 39 1 2.8791 -4.2980 3.8059 40 1 4.3115 -0.5545 4.0058 41 1 4.6497 -0.4705 6.4611 42 1 5.0578 -2.5338 7.7068 43 1 5.2245 -6.9406 5.3690 44 1 4.7569 -5.5210 3.2098 45 1 3.7899 -4.7360 0.1396 46 1 3.9067 -2.9722 -0.0408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042148990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:04 Heat of formation + Delta-G solvation = 111.418756 kcal Electronic energy + Delta-G solvation = -31437.599448 eV Core-core repulsion = 27523.237245 eV Total energy + Delta-G solvation = -3914.362203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.06988 -40.10536 -38.42257 -37.02670 -35.34754 -33.74000 -32.91309 -31.29302 -30.40523 -29.44163 -28.89667 -28.44650 -25.28893 -24.65525 -23.54114 -22.90745 -22.68678 -22.05355 -20.08985 -19.95151 -18.48128 -18.24041 -17.26142 -16.71692 -16.41487 -16.15220 -15.67012 -15.47646 -14.96776 -14.67567 -14.39370 -14.21347 -13.99081 -13.80309 -13.67159 -13.14868 -12.96100 -12.79234 -12.50055 -12.24677 -12.08230 -11.86776 -11.72087 -11.50653 -11.39953 -11.07254 -10.94228 -10.83248 -10.75659 -10.40597 -10.16199 -10.01227 -9.94659 -9.77921 -9.57033 -9.56143 -8.95203 -8.59311 -8.38068 -7.95519 -6.81283 -5.68811 -3.02577 0.34986 1.17093 2.22546 2.61149 2.87189 3.17957 3.41805 3.48508 3.49049 3.55042 4.08717 4.25012 4.45237 4.53091 4.75914 4.88100 4.90045 4.98429 5.19326 5.21408 5.28452 5.37189 5.41130 5.47899 5.57423 5.62132 5.64465 5.70378 5.83314 5.87854 5.92843 5.99971 6.02848 6.13387 6.21165 6.28121 6.32659 6.34430 6.47835 6.52876 6.61258 6.78301 6.84430 6.93352 7.46723 7.52322 7.67150 7.72640 7.85535 8.23006 8.25706 9.23235 9.84887 10.49212 11.42443 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.005029 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.139173 B = 5565.984676 C = 6884.865763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.900 3.100 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.218 4.218 8 H 0.083 0.917 9 N -0.587 5.587 10 C 0.174 3.826 11 C -0.141 4.141 12 C -0.102 4.102 13 H 0.077 0.923 14 C -0.122 4.122 15 C 0.104 3.896 16 N -0.583 5.583 17 C 0.567 3.433 18 O -0.507 6.507 19 C 0.047 3.953 20 C -0.074 4.074 21 C -0.105 4.105 22 C -0.065 4.065 23 C 0.213 3.787 24 N -0.490 5.490 25 C 0.032 3.968 26 C -0.096 4.096 27 N -0.345 5.345 28 C 0.112 3.888 29 C 0.154 3.846 30 H 0.030 0.970 31 H 0.250 0.750 32 H 0.028 0.972 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.161 0.839 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.182 0.818 44 H 0.183 0.817 45 H 0.060 0.940 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.876 -11.239 10.057 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.731 3.269 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.346 4.346 8 H 0.101 0.899 9 N -0.312 5.312 10 C 0.049 3.951 11 C -0.180 4.180 12 C -0.122 4.122 13 H 0.095 0.905 14 C -0.160 4.160 15 C -0.019 4.019 16 N -0.315 5.315 17 C 0.352 3.648 18 O -0.381 6.381 19 C -0.059 4.059 20 C -0.095 4.095 21 C -0.129 4.129 22 C -0.085 4.085 23 C -0.029 4.029 24 N -0.210 5.210 25 C -0.121 4.121 26 C -0.228 4.228 27 N -0.018 5.018 28 C -0.010 4.010 29 C 0.045 3.955 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.178 0.822 41 H 0.168 0.832 42 H 0.171 0.829 43 H 0.199 0.801 44 H 0.200 0.800 45 H 0.079 0.921 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.267 -10.812 10.368 16.238 hybrid contribution 0.041 1.089 -0.853 1.385 sum 6.308 -9.723 9.515 14.995 Atomic orbital electron populations 1.69959 1.04866 1.24820 1.57343 1.24711 0.95503 0.97510 1.02543 0.86246 0.79201 0.83876 0.77597 1.21739 1.21854 1.20157 1.19068 0.91128 0.82226 1.42165 0.89927 1.44264 1.04860 0.99209 1.82888 1.21251 0.85389 0.88559 0.99874 1.23208 0.95265 0.99529 0.99977 1.22463 0.97192 0.97874 0.94631 0.90460 1.21838 0.94380 1.03365 0.96442 1.22119 0.92290 0.93159 0.94371 1.47819 1.41589 1.34224 1.07873 1.17403 0.80640 0.81433 0.85335 1.90885 1.48779 1.38295 1.60122 1.20554 1.07383 0.85242 0.92674 1.21336 0.97205 0.96176 0.94792 1.21028 0.99549 0.99042 0.93274 1.20390 0.99542 0.87710 1.00847 1.20991 1.06299 0.95277 0.80365 1.70659 1.22586 0.97686 1.30064 1.22507 1.02253 0.99955 0.87415 1.22862 1.16225 0.81243 1.02512 1.42980 1.43670 1.05928 1.09257 1.21532 0.99048 1.01771 0.78679 1.20676 0.90539 0.88106 0.96181 0.95313 0.94008 0.95370 0.92430 0.92285 0.92458 0.91830 0.90233 0.91021 0.90512 0.82161 0.83229 0.82914 0.80111 0.79989 0.92140 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.54 55.49 0.58 -26.24 16 2 C -0.01 -0.19 5.45 -17.43 -0.10 -0.28 16 3 Si 0.90 22.61 29.56 -169.99 -5.02 17.58 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.22 -5.89 9.71 -15.06 -0.15 -6.03 16 8 H 0.08 2.29 6.36 -52.49 -0.33 1.95 16 9 N -0.59 -13.98 3.20 -164.42 -0.53 -14.51 16 10 C 0.17 4.01 4.65 -2.74 -0.01 4.00 16 11 C -0.14 -2.46 6.36 -24.07 -0.15 -2.61 16 12 C -0.10 -1.59 3.68 -88.18 -0.32 -1.91 16 13 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.12 -1.83 5.05 -26.77 -0.14 -1.96 16 15 C 0.10 1.41 4.08 -3.77 -0.02 1.39 16 16 N -0.58 -9.61 2.79 -175.50 -0.49 -10.10 16 17 C 0.57 10.34 7.07 -12.69 -0.09 10.25 16 18 O -0.51 -11.07 16.33 5.23 0.09 -10.99 16 19 C 0.05 0.73 5.63 -81.86 -0.46 0.27 16 20 C -0.07 -1.02 9.64 -39.18 -0.38 -1.40 16 21 C -0.11 -1.12 10.04 -39.67 -0.40 -1.52 16 22 C -0.06 -0.72 10.09 -39.30 -0.40 -1.11 16 23 C 0.21 2.92 7.80 -156.01 -1.22 1.70 16 24 N -0.49 -6.83 11.31 -12.76 -0.14 -6.97 16 25 C 0.03 0.37 11.83 -17.93 -0.21 0.15 16 26 C -0.10 -1.17 8.49 -16.58 -0.14 -1.31 16 27 N -0.34 -4.84 2.15 -58.74 -0.13 -4.96 16 28 C 0.11 1.95 5.68 -4.78 -0.03 1.92 16 29 C 0.15 2.89 2.97 -68.30 -0.20 2.69 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.03 0.72 7.56 -51.93 -0.39 0.33 16 33 H 0.06 1.52 7.07 -51.93 -0.37 1.15 16 34 H 0.06 0.93 7.98 -51.93 -0.41 0.52 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.50 6.85 -51.93 -0.36 1.14 16 38 H 0.07 0.78 6.93 -51.93 -0.36 0.42 16 39 H 0.08 1.08 4.68 -51.93 -0.24 0.83 16 40 H 0.16 2.28 8.06 -52.49 -0.42 1.86 16 41 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 43 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.18 1.94 6.03 -52.49 -0.32 1.62 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.10 2.03 5.51 -51.93 -0.29 1.74 16 LS Contribution 355.64 15.07 5.36 5.36 Total: -1.00 -33.32 355.64 -10.70 -44.02 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.01 Total: 2.58 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -4.41 Total: 4.24 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -0.70 Total: -62.79 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.32 -10.70 -44.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042148990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.438 kcal (2) G-P(sol) polarization free energy of solvation -33.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds