Wall clock time and date at job start Sat Apr 11 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99777 * 2 1 4 4 H 1.48501 * 109.47206 * 274.98663 * 3 2 1 5 5 H 1.48491 * 109.47131 * 34.99157 * 3 2 1 6 6 H 1.48506 * 109.47010 * 154.99005 * 3 2 1 7 7 C 1.38808 * 120.00385 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00575 * 172.56313 * 7 2 1 9 9 N 1.36940 * 119.99975 * 352.56134 * 7 2 1 10 10 C 1.47433 * 126.05527 * 353.93863 * 9 7 2 11 11 C 1.54504 * 107.29572 * 181.51749 * 10 9 7 12 12 C 1.56484 * 102.40109 * 22.91218 * 11 10 9 13 13 H 1.09002 * 113.46605 * 202.60122 * 12 11 10 14 14 C 1.53093 * 106.41982 * 78.36456 * 12 11 10 15 15 C 1.52829 * 110.58407 * 195.41561 * 14 12 11 16 16 N 1.47152 * 107.97916 * 57.33974 * 15 14 12 17 17 C 1.34781 * 121.22002 * 122.72368 * 16 15 14 18 18 O 1.21649 * 120.00027 * 184.70638 * 17 16 15 19 19 C 1.47052 * 119.99752 * 4.70489 * 17 16 15 20 20 C 1.37600 * 119.92943 * 225.90896 * 19 17 16 21 21 C 1.39945 * 120.01499 * 179.97438 * 20 19 17 22 22 C 1.36212 * 119.91572 * 0.02562 * 21 20 19 23 23 C 1.40919 * 119.80403 * 359.97438 * 22 21 20 24 24 N 1.32578 * 132.19053 * 179.97438 * 23 22 21 25 25 C 1.33236 * 109.13998 * 180.02562 * 24 23 22 26 26 C 1.35459 * 108.57842 * 359.97438 * 25 24 23 27 27 N 1.36251 * 107.17744 * 359.76900 * 26 25 24 28 28 C 1.46752 * 117.56090 * 302.69857 * 16 15 14 29 29 C 1.46473 * 126.06163 * 173.94359 * 9 7 2 30 30 H 1.09003 * 108.42178 * 269.26362 * 29 9 7 31 31 H 0.96998 * 120.00086 * 359.97438 * 1 2 3 32 32 H 1.08990 * 109.90789 * 300.98806 * 10 9 7 33 33 H 1.09000 * 109.90320 * 62.05558 * 10 9 7 34 34 H 1.08999 * 110.77801 * 141.22883 * 11 10 9 35 35 H 1.08996 * 110.78594 * 264.66616 * 11 10 9 36 36 H 1.09000 * 109.25173 * 75.13011 * 14 12 11 37 37 H 1.09003 * 109.22134 * 315.67903 * 14 12 11 38 38 H 1.09005 * 109.75939 * 297.72243 * 15 14 12 39 39 H 1.09002 * 109.80543 * 176.98948 * 15 14 12 40 40 H 1.07993 * 119.99592 * 359.96374 * 20 19 17 41 41 H 1.07997 * 120.03974 * 179.97438 * 21 20 19 42 42 H 1.08005 * 120.09752 * 180.02562 * 22 21 20 43 43 H 1.07997 * 125.71364 * 180.02562 * 25 24 23 44 44 H 1.07996 * 126.41367 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.23290 * 292.22641 * 28 16 15 46 46 H 1.09004 * 109.23193 * 172.86176 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4121 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0835 -1.2060 -0.1216 9 7 1.3343 -2.3831 0.1525 10 6 -0.1021 -2.5284 0.4512 11 6 -0.3962 -4.0406 0.5688 12 6 1.0118 -4.6311 0.9116 13 1 1.1129 -5.6867 0.6594 14 6 1.2441 -4.3599 2.4003 15 6 2.7187 -4.5456 2.7566 16 7 3.5089 -3.6418 1.9057 17 6 4.3331 -2.7201 2.4421 18 8 4.9105 -1.9278 1.7218 19 6 4.5343 -2.6721 3.8980 20 6 4.4918 -1.4652 4.5575 21 6 4.6825 -1.4176 5.9431 22 6 4.9107 -2.5671 6.6373 23 6 4.9530 -3.8000 5.9562 24 7 5.1529 -5.0420 6.3747 25 6 5.0983 -5.8687 5.3313 26 6 4.8570 -5.1398 4.2153 27 7 4.7584 -3.8363 4.5996 28 6 3.3670 -3.7811 0.4517 29 6 1.9101 -3.7259 0.0484 30 1 1.8242 -4.0583 -0.9861 31 1 -0.4850 0.8400 0.0004 32 1 -0.3378 -2.0304 1.3916 33 1 -0.6944 -2.0969 -0.3557 34 1 -1.1059 -4.2351 1.3729 35 1 -0.7636 -4.4379 -0.3773 36 1 0.6420 -5.0514 2.9898 37 1 0.9449 -3.3372 2.6297 38 1 3.0151 -5.5782 2.5723 39 1 2.8791 -4.2980 3.8059 40 1 4.3115 -0.5545 4.0058 41 1 4.6497 -0.4705 6.4611 42 1 5.0578 -2.5338 7.7068 43 1 5.2245 -6.9406 5.3690 44 1 4.7569 -5.5210 3.2098 45 1 3.7899 -4.7360 0.1396 46 1 3.9067 -2.9722 -0.0408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042148990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:03 Heat of formation + Delta-G solvation = 91.164212 kcal Electronic energy + Delta-G solvation = -31438.477751 eV Core-core repulsion = 27523.237245 eV Total energy + Delta-G solvation = -3915.240505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.04270 -41.46009 -39.84630 -38.06889 -36.82166 -34.90737 -34.56526 -32.89930 -31.49296 -30.80145 -30.24995 -29.80562 -26.61618 -26.43696 -24.79473 -24.17599 -23.69090 -23.11834 -21.80148 -21.24435 -19.82041 -19.38913 -18.54545 -18.28807 -17.51966 -17.33075 -17.03861 -16.68378 -16.45196 -16.04884 -15.90291 -15.65556 -15.32363 -15.20921 -14.63705 -14.53969 -14.28955 -14.22022 -13.81912 -13.41743 -13.28103 -13.26950 -13.10672 -12.95532 -12.82969 -12.69182 -12.62523 -12.43874 -12.08162 -12.00305 -11.70359 -11.52209 -11.45411 -11.34638 -11.19719 -10.92294 -10.69032 -9.95668 -9.68852 -8.91143 -8.81908 -7.84337 -5.16280 -0.66920 0.22656 1.12375 1.35660 1.37236 1.49270 1.51991 1.74197 2.07483 2.46946 2.47233 3.04980 3.27353 3.32866 3.48499 3.54538 3.75932 3.81343 3.84124 3.98199 4.04596 4.15191 4.29250 4.34253 4.40511 4.46269 4.48092 4.53808 4.58847 4.67365 4.74662 4.77956 4.86500 4.92341 4.96749 5.03433 5.06262 5.11812 5.23482 5.37271 5.47746 5.52414 5.56893 5.63576 5.70003 5.79635 5.86047 6.21588 6.22946 6.79209 6.88803 7.13134 7.81746 8.45169 9.25322 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.005029 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.139173 B = 5565.984676 C = 6884.865763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.064 4.064 3 Si 0.952 3.048 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.205 4.205 8 H 0.071 0.929 9 N -0.604 5.604 10 C 0.181 3.819 11 C -0.128 4.128 12 C -0.083 4.083 13 H 0.128 0.872 14 C -0.118 4.118 15 C 0.107 3.893 16 N -0.581 5.581 17 C 0.560 3.440 18 O -0.561 6.561 19 C 0.020 3.980 20 C -0.077 4.077 21 C -0.103 4.103 22 C -0.053 4.053 23 C 0.189 3.811 24 N -0.508 5.508 25 C 0.036 3.964 26 C -0.103 4.103 27 N -0.346 5.346 28 C 0.115 3.885 29 C 0.141 3.859 30 H 0.032 0.968 31 H 0.242 0.758 32 H -0.011 1.011 33 H 0.015 0.985 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.030 0.970 38 H 0.116 0.884 39 H 0.074 0.926 40 H 0.145 0.855 41 H 0.186 0.814 42 H 0.184 0.816 43 H 0.217 0.783 44 H 0.198 0.802 45 H 0.107 0.893 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.434 -14.758 11.880 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.256 4.256 3 Si 0.782 3.218 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.335 4.335 8 H 0.088 0.912 9 N -0.329 5.329 10 C 0.056 3.944 11 C -0.166 4.166 12 C -0.102 4.102 13 H 0.146 0.854 14 C -0.156 4.156 15 C -0.015 4.015 16 N -0.312 5.312 17 C 0.347 3.653 18 O -0.439 6.439 19 C -0.086 4.086 20 C -0.099 4.099 21 C -0.126 4.126 22 C -0.073 4.073 23 C -0.052 4.052 24 N -0.229 5.229 25 C -0.116 4.116 26 C -0.235 4.235 27 N -0.021 5.021 28 C -0.008 4.008 29 C 0.034 3.966 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.007 0.993 33 H 0.033 0.967 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.049 0.951 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.163 0.837 41 H 0.203 0.797 42 H 0.202 0.798 43 H 0.233 0.767 44 H 0.215 0.785 45 H 0.125 0.875 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.822 -14.391 12.204 20.064 hybrid contribution -0.091 2.099 -1.397 2.523 sum 6.731 -12.292 10.807 17.697 Atomic orbital electron populations 1.70147 1.05733 1.24573 1.59397 1.25319 0.96231 1.00036 1.04051 0.85436 0.77795 0.81209 0.77375 1.21539 1.21773 1.20730 1.19138 0.90742 0.83837 1.39760 0.91168 1.44454 1.05527 1.00460 1.82442 1.21001 0.84612 0.92588 0.96165 1.23076 0.97191 0.94697 1.01651 1.22513 0.94103 0.99471 0.94089 0.85367 1.21803 0.95809 1.01416 0.96604 1.22340 0.90860 0.94540 0.93737 1.47951 1.41202 1.34114 1.07898 1.17860 0.80258 0.80815 0.86379 1.90841 1.51017 1.40388 1.61659 1.20183 1.10454 0.86532 0.91388 1.21502 0.96540 0.95300 0.96513 1.21311 0.99028 1.00708 0.91582 1.20851 0.97426 0.86786 1.02267 1.21503 1.07047 0.96202 0.80476 1.70686 1.23157 0.98034 1.31033 1.23112 1.00767 1.01294 0.86439 1.23263 1.16116 0.80619 1.03506 1.43005 1.43781 1.05926 1.09345 1.21452 0.97556 1.02563 0.79205 1.21010 0.92106 0.86159 0.97295 0.95016 0.94836 0.99272 0.96716 0.90187 0.91047 0.88282 0.95074 0.86591 0.90764 0.83697 0.79695 0.79840 0.76678 0.78542 0.87547 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.24 10.54 21.65 0.23 -58.01 16 2 C -0.06 -3.76 5.45 84.86 0.46 -3.30 16 3 Si 0.95 48.94 29.56 68.60 2.03 50.97 16 4 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 5 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 6 H -0.28 -14.56 7.11 99.48 0.71 -13.85 16 7 C -0.21 -11.64 9.71 84.03 0.82 -10.82 16 8 H 0.07 4.12 6.36 -2.91 -0.02 4.10 16 9 N -0.60 -29.65 3.20 -674.11 -2.15 -31.81 16 10 C 0.18 8.67 4.65 86.71 0.40 9.08 16 11 C -0.13 -4.19 6.36 32.32 0.21 -3.98 16 12 C -0.08 -2.26 3.68 -9.21 -0.03 -2.29 16 13 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 14 C -0.12 -3.18 5.05 30.57 0.15 -3.03 16 15 C 0.11 2.57 4.08 86.20 0.35 2.92 16 16 N -0.58 -18.61 2.79 -827.39 -2.31 -20.92 16 17 C 0.56 20.94 7.07 86.55 0.61 21.55 16 18 O -0.56 -25.95 16.33 -4.18 -0.07 -26.02 16 19 C 0.02 0.63 5.63 40.37 0.23 0.85 16 20 C -0.08 -2.17 9.64 22.53 0.22 -1.96 16 21 C -0.10 -2.04 10.04 22.21 0.22 -1.82 16 22 C -0.05 -1.06 10.09 22.45 0.23 -0.83 16 23 C 0.19 4.79 7.80 134.09 1.05 5.84 16 24 N -0.51 -12.77 11.31 -194.27 -2.20 -14.96 16 25 C 0.04 0.71 11.83 83.84 0.99 1.71 16 26 C -0.10 -2.21 8.49 83.36 0.71 -1.50 16 27 N -0.35 -9.19 2.15 -339.77 -0.73 -9.92 16 28 C 0.12 3.86 5.68 85.77 0.49 4.35 16 29 C 0.14 5.14 2.97 44.77 0.13 5.28 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 32 H -0.01 -0.60 7.56 -2.39 -0.02 -0.62 16 33 H 0.01 0.82 7.07 -2.39 -0.02 0.80 16 34 H 0.08 2.31 7.98 -2.39 -0.02 2.29 16 35 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.03 1.15 6.85 -2.39 -0.02 1.13 16 38 H 0.12 1.84 6.93 -2.38 -0.02 1.82 16 39 H 0.07 1.90 4.68 -2.39 -0.01 1.89 16 40 H 0.15 4.45 8.06 -2.91 -0.02 4.42 16 41 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.18 2.41 8.06 -2.91 -0.02 2.38 16 43 H 0.22 2.45 8.06 -2.91 -0.02 2.43 16 44 H 0.20 3.42 6.03 -2.91 -0.02 3.40 16 45 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 46 H 0.06 2.48 5.51 -2.39 -0.01 2.47 16 Total: -1.00 -80.62 355.64 3.04 -77.58 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.01 Total: 11.05 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 7.23 Total: 22.05 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -7.16 Total: -135.62 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.07 Total: -26.02 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.03 Total: 50.97 kcal Total: -80.62 3.04 -77.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042148990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.740 kcal (2) G-P(sol) polarization free energy of solvation -80.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds