Wall clock time and date at job start Sat Apr 11 2020 06:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99730 * 2 1 4 4 H 1.48501 * 109.47201 * 240.00496 * 3 2 1 5 5 H 1.48503 * 109.47383 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47343 * 120.00511 * 3 2 1 7 7 C 1.38803 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99933 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00427 * 359.97438 * 7 2 1 10 10 C 1.48155 * 126.39459 * 0.04419 * 9 7 2 11 11 C 1.55295 * 107.04329 * 174.96016 * 10 9 7 12 12 C 1.53702 * 101.81676 * 337.55355 * 11 10 9 13 13 H 1.09000 * 111.69206 * 281.16447 * 12 11 10 14 14 C 1.51971 * 115.00820 * 153.46480 * 12 11 10 15 15 C 1.53891 * 107.28857 * 184.55581 * 14 12 11 16 16 N 1.46587 * 110.70971 * 51.81838 * 15 14 12 17 17 C 1.34773 * 119.75858 * 131.97283 * 16 15 14 18 18 O 1.21652 * 120.00472 * 175.23885 * 17 16 15 19 19 C 1.47050 * 119.99677 * 355.24169 * 17 16 15 20 20 C 1.37599 * 119.93295 * 58.70502 * 19 17 16 21 21 C 1.39942 * 120.01405 * 179.97438 * 20 19 17 22 22 C 1.36211 * 119.92154 * 0.02562 * 21 20 19 23 23 C 1.40921 * 119.79831 * 359.97438 * 22 21 20 24 24 N 1.32574 * 132.18688 * 180.02562 * 23 22 21 25 25 C 1.33248 * 109.13939 * 179.34680 * 24 23 22 26 26 C 1.35449 * 108.57372 * 0.55271 * 25 24 23 27 27 N 1.36252 * 107.17923 * 359.51839 * 26 25 24 28 28 C 1.47802 * 120.49398 * 312.24806 * 16 15 14 29 29 C 1.45504 * 126.40014 * 179.97438 * 9 7 2 30 30 H 1.08999 * 109.56560 * 93.41607 * 29 9 7 31 31 H 0.97006 * 120.00227 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.92187 * 294.30458 * 10 9 7 33 33 H 1.09003 * 109.92106 * 55.41190 * 10 9 7 34 34 H 1.09003 * 110.96199 * 219.42345 * 11 10 9 35 35 H 1.08999 * 110.96457 * 95.68582 * 11 10 9 36 36 H 1.09003 * 109.89086 * 65.11638 * 14 12 11 37 37 H 1.08997 * 109.89640 * 304.00107 * 14 12 11 38 38 H 1.09002 * 109.23245 * 291.49724 * 15 14 12 39 39 H 1.09000 * 109.19397 * 172.11570 * 15 14 12 40 40 H 1.07994 * 119.99267 * 359.96065 * 20 19 17 41 41 H 1.08005 * 120.03848 * 179.97438 * 21 20 19 42 42 H 1.08003 * 120.10322 * 180.02562 * 22 21 20 43 43 H 1.07998 * 125.71136 * 180.02562 * 25 24 23 44 44 H 1.07997 * 126.41470 * 179.55209 * 26 25 24 45 45 H 1.08997 * 110.06742 * 170.47557 * 28 16 15 46 46 H 1.09006 * 110.06473 * 292.04077 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1467 -2.5532 -0.0009 11 6 -0.4341 -4.0737 -0.1312 12 6 0.8686 -4.5871 -0.7652 13 1 0.9003 -4.3895 -1.8367 14 6 1.1978 -6.0408 -0.4690 15 6 2.5779 -6.3318 -1.0846 16 7 3.5606 -5.3353 -0.6484 17 6 4.7615 -5.7374 -0.1873 18 8 5.6117 -4.9142 0.0941 19 6 5.0440 -7.1713 -0.0245 20 6 4.9609 -8.0149 -1.1083 21 6 5.2299 -9.3797 -0.9554 22 6 5.5734 -9.8716 0.2675 23 6 5.6567 -9.0026 1.3737 24 7 5.9620 -9.2092 2.6472 25 6 5.9142 -8.0495 3.3016 26 6 5.5579 -7.0763 2.4295 27 7 5.3968 -7.6663 1.2119 28 6 3.2421 -3.8932 -0.7049 29 6 1.9083 -3.7213 -0.0016 30 1 1.9992 -4.0808 1.0234 31 1 -0.4851 0.8401 0.0004 32 1 -0.5630 -2.1753 0.9328 33 1 -0.5804 -2.0166 -0.8448 34 1 -1.2851 -4.2549 -0.7878 35 1 -0.5957 -4.5253 0.8476 36 1 0.4468 -6.6903 -0.9187 37 1 1.2311 -6.2015 0.6086 38 1 2.4988 -6.3063 -2.1714 39 1 2.9081 -7.3224 -0.7720 40 1 4.6879 -7.6237 -2.0772 41 1 5.1645 -10.0423 -1.8058 42 1 5.7820 -10.9243 0.3888 43 1 6.1166 -7.9104 4.3533 44 1 5.4267 -6.0287 2.6565 45 1 4.0129 -3.3195 -0.1904 46 1 3.1621 -3.5681 -1.7423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042148991.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:08 Heat of formation + Delta-G solvation = 101.741134 kcal Electronic energy + Delta-G solvation = -30164.698911 eV Core-core repulsion = 26249.917055 eV Total energy + Delta-G solvation = -3914.781856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.06172 -40.44894 -38.52034 -37.34143 -35.59582 -33.85525 -33.03912 -31.47669 -30.89698 -29.61385 -28.89804 -28.42555 -25.48411 -24.68033 -23.54383 -22.97083 -22.35408 -22.16861 -20.32197 -19.95226 -19.35154 -17.96050 -17.66394 -16.80824 -16.71299 -16.24948 -15.86452 -15.60114 -15.11210 -14.83796 -14.47220 -14.29383 -14.21746 -13.86357 -13.79554 -13.40475 -13.20116 -12.94681 -12.65091 -12.46079 -12.41910 -12.00973 -11.99183 -11.61978 -11.39837 -11.32086 -11.03283 -10.90692 -10.79986 -10.51682 -10.25190 -10.10209 -10.04265 -9.96658 -9.73598 -9.60278 -9.04817 -8.72908 -8.67260 -8.07554 -6.93722 -5.78176 -3.12846 0.16052 1.00748 1.85619 2.46274 2.76893 2.87981 3.23625 3.38421 3.43102 3.44095 3.89606 4.02935 4.29131 4.44491 4.50055 4.68475 4.73361 4.83245 4.98969 5.14481 5.22861 5.25547 5.27005 5.33865 5.48027 5.51965 5.56060 5.66270 5.66694 5.73339 5.77016 5.88005 5.94203 5.98324 6.06009 6.11324 6.20839 6.32004 6.40623 6.44510 6.53901 6.62795 6.72934 6.92123 7.19125 7.47744 7.53049 7.62699 7.74500 7.85153 8.16285 9.11976 9.74898 10.40776 11.33832 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.003194 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.430627 B = 8764.964526 C = 9430.403020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.003 4.003 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.233 4.233 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.137 4.137 12 C -0.113 4.113 13 H 0.079 0.921 14 C -0.119 4.119 15 C 0.097 3.903 16 N -0.587 5.587 17 C 0.555 3.445 18 O -0.519 6.519 19 C 0.056 3.944 20 C -0.103 4.103 21 C -0.111 4.111 22 C -0.059 4.059 23 C 0.209 3.791 24 N -0.487 5.487 25 C 0.032 3.968 26 C -0.077 4.077 27 N -0.338 5.338 28 C 0.116 3.884 29 C 0.157 3.843 30 H 0.023 0.977 31 H 0.254 0.746 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.185 0.815 44 H 0.183 0.817 45 H 0.094 0.906 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.162 -20.325 -3.257 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.200 4.200 3 Si 0.741 3.259 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.361 4.361 8 H 0.097 0.903 9 N -0.316 5.316 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.132 4.132 13 H 0.097 0.903 14 C -0.158 4.158 15 C -0.025 4.025 16 N -0.319 5.319 17 C 0.340 3.660 18 O -0.394 6.394 19 C -0.051 4.051 20 C -0.125 4.125 21 C -0.134 4.134 22 C -0.079 4.079 23 C -0.033 4.033 24 N -0.207 5.207 25 C -0.120 4.120 26 C -0.210 4.210 27 N -0.011 5.011 28 C -0.005 4.005 29 C 0.048 3.952 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.174 0.826 41 H 0.168 0.832 42 H 0.172 0.828 43 H 0.202 0.798 44 H 0.201 0.799 45 H 0.112 0.888 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.730 -20.271 -2.722 21.240 hybrid contribution 0.206 1.777 -0.264 1.808 sum 5.936 -18.494 -2.986 19.651 Atomic orbital electron populations 1.69928 1.04913 1.25319 1.56556 1.24782 0.95682 0.97688 1.01854 0.86220 0.78515 0.83115 0.78066 1.21038 1.21554 1.21063 1.18980 0.90384 0.82241 1.44531 0.90337 1.44159 1.01669 0.99028 1.86713 1.21560 0.83546 0.88486 1.01129 1.22715 0.95909 0.99621 0.99303 1.22277 0.97512 0.93188 1.00266 0.90252 1.21805 0.95013 0.97693 1.01273 1.22024 0.89480 0.91461 0.99579 1.48231 1.13048 1.08698 1.61960 1.17662 0.83209 0.86246 0.78913 1.90895 1.45103 1.53313 1.50115 1.20254 1.05065 0.94771 0.84998 1.21279 1.00471 0.93236 0.97488 1.20935 1.00045 0.94723 0.97736 1.20397 0.98876 0.99674 0.88980 1.21027 1.05958 0.81767 0.94514 1.70667 1.22178 1.26856 1.00970 1.22560 1.01825 0.87424 1.00225 1.22882 1.13813 1.01399 0.82902 1.42639 1.41923 1.09925 1.06566 1.21899 0.99474 0.77025 1.02131 1.20962 0.90740 0.87953 0.95590 0.95999 0.93611 0.94380 0.92472 0.92084 0.92514 0.90497 0.91466 0.90818 0.89986 0.82617 0.83235 0.82809 0.79840 0.79943 0.88760 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.36 10.43 55.49 0.58 -25.78 16 2 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -6.29 9.88 -15.06 -0.15 -6.44 16 8 H 0.08 2.07 7.41 -52.48 -0.39 1.68 16 9 N -0.59 -14.36 3.35 -162.93 -0.55 -14.91 16 10 C 0.18 4.09 5.46 -1.91 -0.01 4.08 16 11 C -0.14 -2.37 6.54 -25.15 -0.16 -2.54 16 12 C -0.11 -1.78 2.62 -89.53 -0.23 -2.01 16 13 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 14 C -0.12 -1.42 5.72 -26.79 -0.15 -1.58 16 15 C 0.10 1.05 5.48 -3.53 -0.02 1.03 16 16 N -0.59 -8.41 3.01 -174.16 -0.52 -8.93 16 17 C 0.56 8.48 6.83 -12.69 -0.09 8.39 16 18 O -0.52 -9.87 16.45 5.23 0.09 -9.78 16 19 C 0.06 0.71 5.56 -81.85 -0.46 0.25 16 20 C -0.10 -0.91 7.55 -39.18 -0.30 -1.21 16 21 C -0.11 -0.77 10.04 -39.67 -0.40 -1.17 16 22 C -0.06 -0.53 10.09 -39.30 -0.40 -0.92 16 23 C 0.21 2.67 7.80 -156.02 -1.22 1.45 16 24 N -0.49 -6.74 11.31 -12.76 -0.14 -6.88 16 25 C 0.03 0.39 11.83 -17.93 -0.21 0.18 16 26 C -0.08 -1.04 11.28 -16.58 -0.19 -1.23 16 27 N -0.34 -4.59 2.97 -58.75 -0.17 -4.77 16 28 C 0.12 2.07 5.67 -3.96 -0.02 2.04 16 29 C 0.16 3.05 2.75 -67.84 -0.19 2.87 16 30 H 0.02 0.47 7.93 -51.93 -0.41 0.06 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 33 H 0.06 1.46 7.19 -51.93 -0.37 1.09 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.94 8.12 -51.93 -0.42 0.51 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.87 7.98 -51.93 -0.41 0.46 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.75 5.02 -51.93 -0.26 0.49 16 40 H 0.16 1.01 7.63 -52.49 -0.40 0.61 16 41 H 0.15 0.50 8.06 -52.48 -0.42 0.08 16 42 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 43 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 44 H 0.18 2.42 8.06 -52.49 -0.42 1.99 16 45 H 0.09 1.90 6.79 -51.93 -0.35 1.55 16 46 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -33.60 366.08 -10.88 -44.48 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.37 Total: 1.18 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -4.28 Total: 3.01 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.81 Total: -61.27 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.60 -10.88 -44.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042148991.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.222 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds