Wall clock time and date at job start Sat Apr 11 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99730 * 2 1 4 4 H 1.48501 * 109.47201 * 240.00496 * 3 2 1 5 5 H 1.48503 * 109.47383 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47343 * 120.00511 * 3 2 1 7 7 C 1.38803 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99933 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00427 * 359.97438 * 7 2 1 10 10 C 1.48155 * 126.39459 * 0.04419 * 9 7 2 11 11 C 1.55295 * 107.04329 * 174.96016 * 10 9 7 12 12 C 1.53702 * 101.81676 * 337.55355 * 11 10 9 13 13 H 1.09000 * 111.69206 * 281.16447 * 12 11 10 14 14 C 1.51971 * 115.00820 * 153.46480 * 12 11 10 15 15 C 1.53891 * 107.28857 * 184.55581 * 14 12 11 16 16 N 1.46587 * 110.70971 * 51.81838 * 15 14 12 17 17 C 1.34773 * 119.75858 * 131.97283 * 16 15 14 18 18 O 1.21652 * 120.00472 * 175.23885 * 17 16 15 19 19 C 1.47050 * 119.99677 * 355.24169 * 17 16 15 20 20 C 1.37599 * 119.93295 * 58.70502 * 19 17 16 21 21 C 1.39942 * 120.01405 * 179.97438 * 20 19 17 22 22 C 1.36211 * 119.92154 * 0.02562 * 21 20 19 23 23 C 1.40921 * 119.79831 * 359.97438 * 22 21 20 24 24 N 1.32574 * 132.18688 * 180.02562 * 23 22 21 25 25 C 1.33248 * 109.13939 * 179.34680 * 24 23 22 26 26 C 1.35449 * 108.57372 * 0.55271 * 25 24 23 27 27 N 1.36252 * 107.17923 * 359.51839 * 26 25 24 28 28 C 1.47802 * 120.49398 * 312.24806 * 16 15 14 29 29 C 1.45504 * 126.40014 * 179.97438 * 9 7 2 30 30 H 1.08999 * 109.56560 * 93.41607 * 29 9 7 31 31 H 0.97006 * 120.00227 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.92187 * 294.30458 * 10 9 7 33 33 H 1.09003 * 109.92106 * 55.41190 * 10 9 7 34 34 H 1.09003 * 110.96199 * 219.42345 * 11 10 9 35 35 H 1.08999 * 110.96457 * 95.68582 * 11 10 9 36 36 H 1.09003 * 109.89086 * 65.11638 * 14 12 11 37 37 H 1.08997 * 109.89640 * 304.00107 * 14 12 11 38 38 H 1.09002 * 109.23245 * 291.49724 * 15 14 12 39 39 H 1.09000 * 109.19397 * 172.11570 * 15 14 12 40 40 H 1.07994 * 119.99267 * 359.96065 * 20 19 17 41 41 H 1.08005 * 120.03848 * 179.97438 * 21 20 19 42 42 H 1.08003 * 120.10322 * 180.02562 * 22 21 20 43 43 H 1.07998 * 125.71136 * 180.02562 * 25 24 23 44 44 H 1.07997 * 126.41470 * 179.55209 * 26 25 24 45 45 H 1.08997 * 110.06742 * 170.47557 * 28 16 15 46 46 H 1.09006 * 110.06473 * 292.04077 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1467 -2.5532 -0.0009 11 6 -0.4341 -4.0737 -0.1312 12 6 0.8686 -4.5871 -0.7652 13 1 0.9003 -4.3895 -1.8367 14 6 1.1978 -6.0408 -0.4690 15 6 2.5779 -6.3318 -1.0846 16 7 3.5606 -5.3353 -0.6484 17 6 4.7615 -5.7374 -0.1873 18 8 5.6117 -4.9142 0.0941 19 6 5.0440 -7.1713 -0.0245 20 6 4.9609 -8.0149 -1.1083 21 6 5.2299 -9.3797 -0.9554 22 6 5.5734 -9.8716 0.2675 23 6 5.6567 -9.0026 1.3737 24 7 5.9620 -9.2092 2.6472 25 6 5.9142 -8.0495 3.3016 26 6 5.5579 -7.0763 2.4295 27 7 5.3968 -7.6663 1.2119 28 6 3.2421 -3.8932 -0.7049 29 6 1.9083 -3.7213 -0.0016 30 1 1.9992 -4.0808 1.0234 31 1 -0.4851 0.8401 0.0004 32 1 -0.5630 -2.1753 0.9328 33 1 -0.5804 -2.0166 -0.8448 34 1 -1.2851 -4.2549 -0.7878 35 1 -0.5957 -4.5253 0.8476 36 1 0.4468 -6.6903 -0.9187 37 1 1.2311 -6.2015 0.6086 38 1 2.4988 -6.3063 -2.1714 39 1 2.9081 -7.3224 -0.7720 40 1 4.6879 -7.6237 -2.0772 41 1 5.1645 -10.0423 -1.8058 42 1 5.7820 -10.9243 0.3888 43 1 6.1166 -7.9104 4.3533 44 1 5.4267 -6.0287 2.6565 45 1 4.0129 -3.3195 -0.1904 46 1 3.1621 -3.5681 -1.7423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042148991.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:07 Heat of formation + Delta-G solvation = 80.951741 kcal Electronic energy + Delta-G solvation = -30165.600407 eV Core-core repulsion = 26249.917055 eV Total energy + Delta-G solvation = -3915.683351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.94273 -41.66396 -39.90740 -38.19855 -37.00764 -34.76394 -34.67199 -32.99186 -32.03331 -30.80173 -30.23727 -29.65399 -26.69972 -26.37705 -24.70313 -23.87483 -23.52395 -23.15058 -21.85624 -21.43994 -20.54564 -18.93260 -18.78537 -18.38555 -17.77842 -17.22473 -16.97565 -16.69427 -16.48251 -16.19854 -15.89027 -15.72865 -15.36696 -15.13307 -14.90706 -14.61536 -14.53308 -14.06509 -13.89166 -13.67205 -13.36683 -13.27162 -13.16979 -13.11061 -12.85393 -12.72283 -12.56253 -12.19329 -12.08145 -12.06736 -11.81512 -11.60512 -11.57266 -11.38469 -11.13915 -11.09933 -10.75786 -9.93904 -9.89882 -8.95715 -8.94344 -7.89881 -5.25365 -0.62679 0.22885 0.83026 1.41879 1.44158 1.48220 1.50780 1.79702 1.83848 2.43757 2.45883 2.95426 3.25316 3.28306 3.43483 3.50673 3.70204 3.84905 3.88590 3.91654 4.05015 4.18891 4.20388 4.23470 4.29830 4.38696 4.46761 4.51751 4.55863 4.64629 4.73156 4.79502 4.84658 4.86146 4.96950 5.04541 5.09159 5.09843 5.15466 5.27362 5.41732 5.43717 5.52414 5.53620 5.62844 5.75559 5.86670 6.07794 6.15373 6.69514 6.72640 7.04213 7.72275 8.38838 9.20617 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.003194 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.430627 B = 8764.964526 C = 9430.403020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.058 4.058 3 Si 0.970 3.030 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.241 4.241 8 H 0.075 0.925 9 N -0.612 5.612 10 C 0.180 3.820 11 C -0.122 4.122 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.111 4.111 15 C 0.092 3.908 16 N -0.582 5.582 17 C 0.556 3.444 18 O -0.572 6.572 19 C 0.015 3.985 20 C -0.072 4.072 21 C -0.086 4.086 22 C -0.063 4.063 23 C 0.198 3.802 24 N -0.517 5.517 25 C 0.033 3.967 26 C -0.113 4.113 27 N -0.345 5.345 28 C 0.130 3.870 29 C 0.148 3.852 30 H 0.000 1.000 31 H 0.248 0.752 32 H -0.003 1.003 33 H 0.026 0.974 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.119 0.881 37 H 0.054 0.946 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.189 0.811 41 H 0.204 0.796 42 H 0.183 0.817 43 H 0.206 0.794 44 H 0.168 0.832 45 H 0.057 0.943 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.125 -24.556 -6.101 25.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.799 3.201 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.370 4.370 8 H 0.093 0.907 9 N -0.337 5.337 10 C 0.056 3.944 11 C -0.160 4.160 12 C -0.114 4.114 13 H 0.105 0.895 14 C -0.149 4.149 15 C -0.028 4.028 16 N -0.314 5.314 17 C 0.342 3.658 18 O -0.451 6.451 19 C -0.092 4.092 20 C -0.093 4.093 21 C -0.109 4.109 22 C -0.083 4.083 23 C -0.044 4.044 24 N -0.238 5.238 25 C -0.119 4.119 26 C -0.246 4.246 27 N -0.017 5.017 28 C 0.007 3.993 29 C 0.040 3.960 30 H 0.018 0.982 31 H 0.057 0.943 32 H 0.015 0.985 33 H 0.045 0.955 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.138 0.862 37 H 0.073 0.927 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.206 0.794 41 H 0.221 0.779 42 H 0.200 0.800 43 H 0.223 0.777 44 H 0.185 0.815 45 H 0.076 0.924 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.684 -24.556 -5.582 25.816 hybrid contribution 0.240 3.010 0.588 3.076 sum 5.925 -21.547 -4.993 22.897 Atomic orbital electron populations 1.70133 1.06056 1.25403 1.57911 1.25536 0.96539 1.00659 1.02465 0.85278 0.77316 0.79387 0.78142 1.20096 1.21620 1.21013 1.19259 0.90596 0.83760 1.43399 0.90706 1.44417 1.02578 1.00197 1.86513 1.21374 0.82795 0.92567 0.97691 1.22590 0.97857 0.94774 1.00792 1.22211 0.94404 0.95060 0.99720 0.89540 1.21805 0.96872 0.95085 1.01170 1.22396 0.87650 0.91281 1.01490 1.48227 1.13754 1.07663 1.61736 1.18108 0.82628 0.87415 0.77617 1.90858 1.46898 1.55229 1.52153 1.20116 1.09390 0.93569 0.86089 1.21889 0.96636 0.93663 0.97134 1.21520 0.96869 0.94148 0.98396 1.20958 0.98335 1.00586 0.88421 1.21780 1.05391 0.81938 0.95274 1.70657 1.23883 1.27246 1.01990 1.22922 1.00889 0.86959 1.01130 1.22833 1.16462 1.01226 0.84085 1.42704 1.42087 1.10303 1.06649 1.21439 0.97203 0.79426 1.01263 1.21090 0.93128 0.86456 0.95301 0.98217 0.94272 0.98501 0.95528 0.89189 0.91634 0.86237 0.92678 0.87362 0.87486 0.79378 0.77946 0.79987 0.77709 0.81459 0.92423 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.79 10.43 21.65 0.23 -56.56 16 2 C -0.06 -3.35 5.49 84.86 0.47 -2.89 16 3 Si 0.97 46.63 29.55 68.60 2.03 48.65 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.24 -13.63 9.88 84.03 0.83 -12.80 16 8 H 0.08 4.16 7.41 -2.91 -0.02 4.14 16 9 N -0.61 -31.12 3.35 -669.40 -2.24 -33.36 16 10 C 0.18 8.68 5.46 86.85 0.47 9.16 16 11 C -0.12 -4.07 6.54 31.62 0.21 -3.86 16 12 C -0.09 -2.78 2.62 -10.08 -0.03 -2.81 16 13 H 0.09 2.49 8.13 -2.39 -0.02 2.47 16 14 C -0.11 -2.20 5.72 30.56 0.17 -2.02 16 15 C 0.09 1.58 5.48 86.66 0.48 2.06 16 16 N -0.58 -16.04 3.01 -823.14 -2.48 -18.51 16 17 C 0.56 16.95 6.83 86.55 0.59 17.54 16 18 O -0.57 -23.07 16.45 -4.20 -0.07 -23.14 16 19 C 0.01 0.34 5.56 40.37 0.22 0.57 16 20 C -0.07 -0.90 7.55 22.53 0.17 -0.73 16 21 C -0.09 -0.64 10.04 22.21 0.22 -0.42 16 22 C -0.06 -0.84 10.09 22.45 0.23 -0.61 16 23 C 0.20 4.71 7.80 134.09 1.05 5.76 16 24 N -0.52 -14.07 11.31 -194.27 -2.20 -16.27 16 25 C 0.03 0.85 11.83 83.83 0.99 1.84 16 26 C -0.11 -3.26 11.28 83.36 0.94 -2.32 16 27 N -0.34 -9.23 2.97 -339.78 -1.01 -10.24 16 28 C 0.13 4.73 5.67 85.72 0.49 5.22 16 29 C 0.15 5.92 2.75 45.58 0.13 6.04 16 30 H 0.00 0.02 7.93 -2.39 -0.02 0.00 16 31 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 32 H 0.00 -0.18 7.77 -2.39 -0.02 -0.20 16 33 H 0.03 1.42 7.19 -2.39 -0.02 1.40 16 34 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 36 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.27 7.98 -2.39 -0.02 1.25 16 38 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 39 H 0.11 1.37 5.02 -2.39 -0.01 1.36 16 40 H 0.19 1.13 7.63 -2.91 -0.02 1.11 16 41 H 0.20 -0.48 8.06 -2.91 -0.02 -0.51 16 42 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 43 H 0.21 3.88 8.06 -2.91 -0.02 3.86 16 44 H 0.17 5.08 8.06 -2.91 -0.02 5.05 16 45 H 0.06 2.51 6.79 -2.39 -0.02 2.49 16 46 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 Total: -1.00 -82.94 366.08 2.88 -80.06 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.99 Total: 9.65 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 7.63 Total: 19.71 kcal Atomic # 7 Polarization: -127.24 SS G_CDS: -7.70 Total: -134.94 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.07 Total: -23.14 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -82.94 2.88 -80.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042148991.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.014 kcal (2) G-P(sol) polarization free energy of solvation -82.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds