Wall clock time and date at job start Sat Apr 11 2020 06:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99971 * 2 1 4 4 H 1.48505 * 109.46431 * 239.99668 * 3 2 1 5 5 H 1.48494 * 109.47239 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47337 * 120.00087 * 3 2 1 7 7 C 1.38816 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99732 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99786 * 359.97438 * 7 2 1 10 10 C 1.48155 * 126.40027 * 0.04297 * 9 7 2 11 11 C 1.55300 * 107.04108 * 184.96346 * 10 9 7 12 12 C 1.53700 * 101.81596 * 22.44811 * 11 10 9 13 13 H 1.09003 * 111.11719 * 78.60100 * 12 11 10 14 14 C 1.51976 * 114.99852 * 206.54487 * 12 11 10 15 15 C 1.53889 * 107.29142 * 175.42499 * 14 12 11 16 16 N 1.46633 * 110.80128 * 308.25740 * 15 14 12 17 17 C 1.34775 * 119.78382 * 227.68227 * 16 15 14 18 18 O 1.21647 * 120.00409 * 172.49369 * 17 16 15 19 19 C 1.47055 * 119.99742 * 352.49070 * 17 16 15 20 20 C 1.37597 * 119.93554 * 331.74634 * 19 17 16 21 21 C 1.39938 * 120.01780 * 179.97438 * 20 19 17 22 22 C 1.36212 * 119.91562 * 0.02562 * 21 20 19 23 23 C 1.40917 * 119.80536 * 359.97438 * 22 21 20 24 24 N 1.32568 * 132.19208 * 180.02562 * 23 22 21 25 25 C 1.33243 * 109.14393 * 179.34904 * 24 23 22 26 26 C 1.35458 * 108.57233 * 0.55108 * 25 24 23 27 27 N 1.36250 * 107.17615 * 359.52166 * 26 25 24 28 28 C 1.47796 * 120.46064 * 47.53565 * 16 15 14 29 29 C 1.45502 * 126.39243 * 179.97438 * 9 7 2 30 30 H 1.09004 * 109.56771 * 265.87850 * 29 9 7 31 31 H 0.97005 * 119.99928 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.91680 * 304.31187 * 10 9 7 33 33 H 1.09004 * 109.91687 * 65.61566 * 10 9 7 34 34 H 1.09004 * 110.95630 * 140.57126 * 11 10 9 35 35 H 1.08999 * 110.96005 * 264.31144 * 11 10 9 36 36 H 1.08999 * 109.89179 * 294.87151 * 14 12 11 37 37 H 1.09004 * 109.89391 * 55.90780 * 14 12 11 38 38 H 1.08998 * 109.22691 * 68.50806 * 15 14 12 39 39 H 1.09005 * 109.22661 * 187.90960 * 15 14 12 40 40 H 1.08006 * 119.99005 * 359.95309 * 20 19 17 41 41 H 1.07996 * 120.04353 * 179.97438 * 21 20 19 42 42 H 1.08008 * 120.09791 * 180.02562 * 22 21 20 43 43 H 1.07995 * 125.71946 * 180.02562 * 25 24 23 44 44 H 1.08000 * 126.41287 * 179.55832 * 26 25 24 45 45 H 1.09005 * 110.06341 * 189.66775 * 28 16 15 46 46 H 1.09001 * 110.06563 * 68.21478 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6962 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 -0.1469 -2.5531 0.0014 11 6 -0.4344 -4.0737 0.1314 12 6 0.8679 -4.5872 0.7658 13 1 0.8912 -4.3813 1.8360 14 6 1.1972 -6.0409 0.4693 15 6 2.5772 -6.3321 1.0849 16 7 3.5615 -5.3353 0.6517 17 6 4.7654 -5.7366 0.1978 18 8 5.5324 -4.9277 -0.2893 19 6 5.1519 -7.1524 0.2914 20 6 4.6320 -7.9414 1.2917 21 6 4.9981 -9.2890 1.3821 22 6 5.8700 -9.8181 0.4791 23 6 6.3990 -9.0050 -0.5431 24 7 7.2462 -9.2558 -1.5315 25 6 7.4232 -8.1460 -2.2474 26 6 6.6806 -7.1552 -1.6980 27 7 6.0294 -7.6875 -0.6261 28 6 3.2416 -3.8934 0.7062 29 6 1.9080 -3.7214 0.0017 30 1 1.9858 -4.0859 -1.0226 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5805 -2.0195 0.8472 33 1 -0.5628 -2.1750 -0.9325 34 1 -1.2856 -4.2548 0.7877 35 1 -0.5957 -4.5251 -0.8476 36 1 0.4461 -6.6905 0.9186 37 1 1.2294 -6.2015 -0.6084 38 1 2.4979 -6.3069 2.1717 39 1 2.9081 -7.3225 0.7720 40 1 3.9414 -7.5204 2.0075 41 1 4.5907 -9.9085 2.1672 42 1 6.1543 -10.8579 0.5458 43 1 8.0593 -8.0500 -3.1148 44 1 6.6162 -6.1346 -2.0452 45 1 4.0127 -3.3196 0.1922 46 1 3.1619 -3.5670 1.7432 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042148992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:13 Heat of formation + Delta-G solvation = 115.393231 kcal Electronic energy + Delta-G solvation = -30062.620897 eV Core-core repulsion = 26148.431041 eV Total energy + Delta-G solvation = -3914.189856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.06059 -40.52378 -38.48296 -37.43107 -35.65481 -33.79327 -33.05323 -31.60178 -30.92669 -29.58929 -28.87980 -28.32615 -25.61552 -24.64800 -23.51099 -23.07740 -22.31243 -22.15070 -20.33400 -19.95276 -19.37099 -17.94678 -17.68584 -16.72065 -16.64860 -16.17250 -15.98397 -15.62191 -15.12658 -14.85090 -14.49523 -14.23732 -14.11285 -13.85458 -13.79380 -13.49313 -13.27023 -13.01067 -12.55762 -12.48304 -12.38383 -12.01323 -11.93975 -11.62089 -11.32992 -11.25843 -11.03066 -10.90066 -10.79570 -10.42887 -10.24289 -10.09618 -10.04810 -9.93624 -9.72582 -9.58586 -9.01035 -8.73504 -8.67021 -8.06874 -6.93002 -5.77747 -3.12209 0.05007 1.01264 2.02917 2.38142 2.87849 2.91444 3.27327 3.38658 3.43335 3.44379 3.90392 4.03431 4.28259 4.42609 4.45963 4.63670 4.72375 4.82725 4.96727 5.14359 5.23375 5.26097 5.28076 5.32437 5.47765 5.51406 5.55809 5.65529 5.66877 5.72770 5.76257 5.87367 5.94035 5.98291 6.05796 6.12885 6.22112 6.33298 6.42728 6.44960 6.54460 6.63038 6.74671 6.93239 7.20982 7.48282 7.53517 7.63871 7.74741 7.88890 8.16712 9.12591 9.75498 10.41434 11.34345 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.003124 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.606274 B = 8961.152340 C =10055.773538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.004 4.004 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.233 4.233 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.115 4.115 13 H 0.079 0.921 14 C -0.120 4.120 15 C 0.085 3.915 16 N -0.588 5.588 17 C 0.555 3.445 18 O -0.524 6.524 19 C 0.043 3.957 20 C -0.104 4.104 21 C -0.119 4.119 22 C -0.050 4.050 23 C 0.201 3.799 24 N -0.485 5.485 25 C 0.024 3.976 26 C -0.066 4.066 27 N -0.336 5.336 28 C 0.117 3.883 29 C 0.157 3.843 30 H 0.024 0.976 31 H 0.253 0.747 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.168 0.832 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.184 0.816 44 H 0.189 0.811 45 H 0.095 0.905 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.149 -20.318 4.054 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.200 4.200 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.361 4.361 8 H 0.097 0.903 9 N -0.316 5.316 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.135 4.135 13 H 0.097 0.903 14 C -0.158 4.158 15 C -0.037 4.037 16 N -0.321 5.321 17 C 0.341 3.659 18 O -0.401 6.401 19 C -0.064 4.064 20 C -0.125 4.125 21 C -0.143 4.143 22 C -0.071 4.071 23 C -0.040 4.040 24 N -0.205 5.205 25 C -0.128 4.128 26 C -0.199 4.199 27 N -0.008 5.008 28 C -0.004 4.004 29 C 0.048 3.952 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.186 0.814 41 H 0.168 0.832 42 H 0.172 0.828 43 H 0.201 0.799 44 H 0.206 0.794 45 H 0.114 0.886 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.856 -20.277 3.600 21.410 hybrid contribution 0.040 1.774 0.075 1.776 sum 5.896 -18.502 3.675 19.763 Atomic orbital electron populations 1.69929 1.04913 1.25303 1.56611 1.24785 0.95682 0.97684 1.01896 0.86219 0.78513 0.83124 0.78060 1.21063 1.21566 1.21053 1.18985 0.90390 0.82249 1.44455 0.90329 1.44155 1.01657 0.99058 1.86729 1.21557 0.83572 0.88485 1.01075 1.22731 0.95938 0.99655 0.99301 1.22314 0.97583 0.93270 1.00309 0.90259 1.21821 0.94928 0.97660 1.01401 1.22529 0.89709 0.92048 0.99404 1.48100 1.12631 1.08624 1.62737 1.17583 0.82813 0.86073 0.79389 1.90854 1.51363 1.54012 1.43911 1.20206 0.97029 0.94895 0.94225 1.21848 0.99243 0.94089 0.97332 1.20980 0.98511 0.94784 0.99982 1.20440 0.95573 0.99910 0.91152 1.21017 1.00367 0.82542 1.00077 1.70642 1.16531 1.27755 1.05607 1.22591 1.01174 0.88066 1.00925 1.23050 1.02610 1.02344 0.91926 1.42579 1.28146 1.10951 1.19127 1.21869 0.99584 0.77023 1.01938 1.20981 0.90729 0.87879 0.95653 0.95876 0.93625 0.92531 0.94378 0.92109 0.92541 0.90419 0.91302 0.90708 0.88825 0.81447 0.83163 0.82802 0.79895 0.79376 0.88641 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.39 10.44 55.49 0.58 -25.82 16 2 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.28 9.88 -15.06 -0.15 -6.43 16 8 H 0.08 2.07 7.41 -52.49 -0.39 1.68 16 9 N -0.59 -14.36 3.35 -162.87 -0.55 -14.91 16 10 C 0.18 4.09 5.45 -1.91 -0.01 4.08 16 11 C -0.14 -2.36 6.54 -25.15 -0.16 -2.53 16 12 C -0.11 -1.79 2.61 -89.50 -0.23 -2.02 16 13 H 0.08 1.25 8.13 -51.93 -0.42 0.82 16 14 C -0.12 -1.36 5.72 -26.79 -0.15 -1.52 16 15 C 0.09 0.86 4.53 -3.51 -0.02 0.85 16 16 N -0.59 -8.30 3.02 -174.10 -0.53 -8.82 16 17 C 0.56 8.48 7.35 -12.69 -0.09 8.38 16 18 O -0.52 -9.85 14.69 5.24 0.08 -9.78 16 19 C 0.04 0.54 6.31 -81.85 -0.52 0.03 16 20 C -0.10 -0.90 7.37 -39.18 -0.29 -1.19 16 21 C -0.12 -0.82 10.04 -39.67 -0.40 -1.22 16 22 C -0.05 -0.45 10.09 -39.30 -0.40 -0.84 16 23 C 0.20 2.58 7.80 -156.03 -1.22 1.36 16 24 N -0.49 -6.72 11.31 -12.76 -0.14 -6.87 16 25 C 0.02 0.30 11.83 -17.93 -0.21 0.09 16 26 C -0.07 -0.90 10.85 -16.58 -0.18 -1.08 16 27 N -0.34 -4.61 2.97 -58.75 -0.17 -4.79 16 28 C 0.12 2.07 5.70 -3.94 -0.02 2.05 16 29 C 0.16 3.05 2.77 -67.80 -0.19 2.86 16 30 H 0.02 0.50 7.90 -51.93 -0.41 0.09 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.06 1.44 7.21 -51.93 -0.37 1.07 16 33 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.85 7.97 -51.93 -0.41 0.44 16 38 H 0.07 0.60 7.64 -51.93 -0.40 0.20 16 39 H 0.09 0.77 4.49 -51.93 -0.23 0.54 16 40 H 0.17 1.06 5.11 -52.48 -0.27 0.79 16 41 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.18 1.65 8.06 -52.49 -0.42 1.22 16 44 H 0.19 2.58 7.12 -52.49 -0.37 2.21 16 45 H 0.10 1.93 6.74 -51.93 -0.35 1.58 16 46 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 359.50 15.07 5.42 5.42 Total: -1.00 -33.77 359.50 -10.80 -44.57 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.13 Total: 1.41 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -4.34 Total: 2.68 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.81 Total: -61.20 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.77 -10.80 -44.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042148992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.966 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds