Wall clock time and date at job start Sat Apr 11 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00002 * 2 1 4 4 H 1.48504 * 109.47250 * 240.00395 * 3 2 1 5 5 H 1.48497 * 109.47380 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46900 * 120.00525 * 3 2 1 7 7 C 1.38813 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99960 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99993 * 359.97438 * 7 2 1 10 10 C 1.47434 * 126.06258 * 0.03096 * 9 7 2 11 11 C 1.54505 * 107.15225 * 178.35320 * 10 9 7 12 12 C 1.56032 * 102.61018 * 337.15493 * 11 10 9 13 13 H 1.08993 * 112.85822 * 157.06900 * 12 11 10 14 14 C 1.53096 * 106.39481 * 281.62007 * 12 11 10 15 15 C 1.52842 * 110.57295 * 164.58569 * 14 12 11 16 16 N 1.47151 * 107.97031 * 302.64278 * 15 14 12 17 17 C 1.34781 * 121.21289 * 237.30294 * 16 15 14 18 18 O 1.21765 * 120.00075 * 172.74172 * 17 16 15 19 19 C 1.46297 * 120.00139 * 352.75232 * 17 16 15 20 20 N 1.32518 * 125.56213 * 353.33049 * 19 17 16 21 21 C 1.32023 * 109.86601 * 179.88465 * 20 19 17 22 22 C 1.39369 * 107.93034 * 0.38072 * 21 20 19 23 23 C 1.40421 * 133.41376 * 179.77430 * 22 21 20 24 24 C 1.36325 * 119.18969 * 180.02562 * 23 22 21 25 25 C 1.40331 * 119.58748 * 359.97438 * 24 23 22 26 26 C 1.35171 * 120.39351 * 359.97438 * 25 24 23 27 27 N 1.36172 * 120.59957 * 0.04023 * 26 25 24 28 28 C 1.46756 * 117.57567 * 57.28998 * 16 15 14 29 29 C 1.46466 * 126.06153 * 180.02562 * 9 7 2 30 30 H 1.09005 * 108.42440 * 90.12548 * 29 9 7 31 31 H 0.96998 * 120.00350 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.89904 * 297.72888 * 10 9 7 33 33 H 1.08995 * 109.90453 * 58.78803 * 10 9 7 34 34 H 1.08991 * 110.78388 * 95.43409 * 11 10 9 35 35 H 1.08991 * 110.78208 * 218.68717 * 11 10 9 36 36 H 1.09001 * 109.25551 * 284.86565 * 14 12 11 37 37 H 1.08997 * 109.25854 * 44.30200 * 14 12 11 38 38 H 1.08996 * 109.75889 * 62.26056 * 15 14 12 39 39 H 1.08998 * 109.76053 * 183.02702 * 15 14 12 40 40 H 1.07999 * 126.03376 * 180.14922 * 21 20 19 41 41 H 1.07995 * 120.40564 * 359.97167 * 23 22 21 42 42 H 1.07992 * 120.20873 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.79821 * 179.97438 * 25 24 23 44 44 H 1.08004 * 119.69445 * 179.97438 * 26 25 24 45 45 H 1.09000 * 109.22617 * 187.16392 * 28 16 15 46 46 H 1.08999 * 109.22757 * 67.80150 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1406 -2.5437 -0.0006 11 6 -0.4379 -4.0593 -0.0430 12 6 0.8718 -4.6464 -0.6551 13 1 1.0213 -5.6971 -0.4068 14 6 0.7964 -4.3913 -2.1627 15 6 2.1697 -4.5750 -2.8079 16 7 3.1096 -3.6579 -2.1440 17 6 3.8020 -2.7388 -2.8457 18 8 4.4719 -1.9056 -2.2628 19 6 3.7485 -2.7420 -4.3077 20 7 3.1612 -3.6651 -5.0554 21 6 3.2978 -3.3613 -6.3329 22 6 4.0241 -2.1747 -6.4165 23 6 4.4693 -1.3895 -7.4921 24 6 5.1773 -0.2527 -7.2371 25 6 5.4476 0.1121 -5.9093 26 6 5.0099 -0.6558 -4.8865 27 7 4.3020 -1.7937 -5.1276 28 6 3.2655 -3.7803 -0.6898 29 6 1.9197 -3.7267 -0.0005 30 1 2.0574 -4.0425 1.0336 31 1 -0.4850 0.8400 0.0004 32 1 -0.5600 -2.1086 0.9065 33 1 -0.5656 -2.0548 -0.8772 34 1 -0.6040 -4.4491 0.9612 35 1 -1.2947 -4.2675 -0.6836 36 1 0.0920 -5.0919 -2.6111 37 1 0.4502 -3.3727 -2.3382 38 1 2.5039 -5.6041 -2.6763 39 1 2.1124 -4.3384 -3.8703 40 1 2.9175 -3.9334 -7.1662 41 1 4.2543 -1.6829 -8.5089 42 1 5.5281 0.3632 -8.0519 43 1 6.0085 1.0117 -5.7034 44 1 5.2247 -0.3645 -3.8689 45 1 3.8879 -2.9630 -0.3255 46 1 3.7493 -4.7294 -0.4593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042153131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:17 Heat of formation + Delta-G solvation = 106.285874 kcal Electronic energy + Delta-G solvation = -31050.287615 eV Core-core repulsion = 27135.702833 eV Total energy + Delta-G solvation = -3914.584781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.91270 -39.74010 -37.95733 -37.49880 -34.94802 -33.41210 -32.73892 -31.37853 -30.85792 -29.47967 -28.30220 -28.01339 -24.80490 -24.42645 -23.92310 -22.73058 -22.48640 -22.03057 -20.18538 -19.87377 -18.43359 -17.31107 -16.98005 -16.49459 -16.45920 -16.09838 -15.61999 -15.33709 -14.91160 -14.62311 -14.43920 -14.12126 -14.04100 -13.78572 -13.47962 -12.93292 -12.76234 -12.56814 -12.41523 -12.08388 -11.91828 -11.87653 -11.56326 -11.33104 -11.24041 -10.88425 -10.79386 -10.73682 -10.68000 -10.18066 -10.03041 -9.81260 -9.75996 -9.59237 -9.48303 -9.43571 -9.06896 -8.46961 -8.10345 -7.52610 -6.69945 -5.58224 -2.89490 0.66958 0.85428 2.31585 2.44292 3.27307 3.49304 3.51594 3.52835 3.55917 3.76090 4.35497 4.37913 4.59875 4.62368 4.74705 4.78496 4.89456 5.16883 5.29687 5.39197 5.48727 5.52899 5.63962 5.68264 5.72414 5.84790 5.86595 5.95033 5.98966 6.03341 6.10529 6.17932 6.27470 6.36532 6.37603 6.40398 6.51680 6.62797 6.68988 6.73100 6.82334 6.96702 7.09759 7.23834 7.60726 7.70041 7.71724 7.93306 7.97289 8.36889 8.58481 9.35418 9.96319 10.61519 11.54309 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.005095 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.651137 B = 5494.143827 C = 7147.038435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.286 1.286 7 C -0.209 4.209 8 H 0.082 0.918 9 N -0.588 5.588 10 C 0.179 3.821 11 C -0.144 4.144 12 C -0.102 4.102 13 H 0.075 0.925 14 C -0.120 4.120 15 C 0.077 3.923 16 N -0.567 5.567 17 C 0.609 3.391 18 O -0.541 6.541 19 C 0.110 3.890 20 N -0.403 5.403 21 C -0.019 4.019 22 C 0.015 3.985 23 C -0.085 4.085 24 C -0.112 4.112 25 C -0.141 4.141 26 C 0.073 3.927 27 N -0.320 5.320 28 C 0.114 3.886 29 C 0.154 3.846 30 H 0.027 0.973 31 H 0.249 0.751 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.137 0.863 40 H 0.187 0.813 41 H 0.149 0.851 42 H 0.139 0.861 43 H 0.152 0.848 44 H 0.180 0.820 45 H 0.095 0.905 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.364 -7.727 -14.577 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.213 1.213 7 C -0.337 4.337 8 H 0.100 0.900 9 N -0.314 5.314 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.122 4.122 13 H 0.093 0.907 14 C -0.158 4.158 15 C -0.045 4.045 16 N -0.297 5.297 17 C 0.395 3.605 18 O -0.418 6.418 19 C -0.140 4.140 20 N -0.119 5.119 21 C -0.180 4.180 22 C -0.097 4.097 23 C -0.105 4.105 24 C -0.133 4.133 25 C -0.161 4.161 26 C -0.050 4.050 27 N 0.011 4.989 28 C -0.009 4.009 29 C 0.046 3.954 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.153 0.847 40 H 0.204 0.796 41 H 0.167 0.833 42 H 0.157 0.843 43 H 0.169 0.831 44 H 0.197 0.803 45 H 0.113 0.887 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.273 -7.711 -13.668 17.296 hybrid contribution 0.631 1.678 -0.300 1.817 sum 7.904 -6.033 -13.967 17.145 Atomic orbital electron populations 1.69951 1.04750 1.24704 1.58146 1.24698 0.95563 0.97376 1.02942 0.86271 0.78426 0.83653 0.77979 1.21316 1.21955 1.21298 1.19014 0.90585 0.82040 1.42066 0.90050 1.44294 1.01454 0.99257 1.86370 1.21206 0.84283 0.88360 1.00728 1.23158 0.96246 0.99670 0.99153 1.22397 0.96867 0.97621 0.95305 0.90681 1.21809 0.96286 1.02932 0.94756 1.22679 0.88214 0.92239 1.01408 1.47353 1.40822 1.33869 1.07700 1.16009 0.80705 0.81477 0.82341 1.90819 1.43922 1.37190 1.69846 1.22583 1.07666 0.90117 0.93633 1.69689 1.15947 1.23209 1.03093 1.22783 1.04830 0.95683 0.94664 1.19982 1.05725 0.99653 0.84297 1.20512 0.98244 0.94179 0.97519 1.21146 0.98523 0.96812 0.96854 1.20961 1.02469 1.00853 0.91834 1.22162 0.94490 0.85486 1.02837 1.42367 1.32614 1.16175 1.07698 1.21511 0.99355 1.01509 0.78510 1.20709 0.91049 0.87941 0.95711 0.95542 0.94091 0.94201 0.93763 0.92852 0.92335 0.92144 0.90551 0.92361 0.84665 0.79584 0.83331 0.84320 0.83078 0.80317 0.88681 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 10.38 55.49 0.58 -27.60 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 3 Si 0.91 23.67 29.55 -169.99 -5.02 18.64 16 4 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 5 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.21 -5.96 9.70 -15.06 -0.15 -6.11 16 8 H 0.08 2.36 6.51 -52.49 -0.34 2.02 16 9 N -0.59 -15.04 3.20 -164.39 -0.53 -15.56 16 10 C 0.18 4.41 4.61 -2.74 -0.01 4.40 16 11 C -0.14 -2.73 6.32 -24.32 -0.15 -2.88 16 12 C -0.10 -1.80 3.68 -88.42 -0.33 -2.12 16 13 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 14 C -0.12 -2.08 5.05 -26.76 -0.14 -2.21 16 15 C 0.08 1.28 6.16 -3.77 -0.02 1.26 16 16 N -0.57 -11.00 2.97 -175.75 -0.52 -11.52 16 17 C 0.61 12.66 7.66 -13.02 -0.10 12.56 16 18 O -0.54 -12.52 14.83 5.13 0.08 -12.45 16 19 C 0.11 2.01 7.57 -153.90 -1.17 0.84 16 20 N -0.40 -6.46 7.54 -10.62 -0.08 -6.54 16 21 C -0.02 -0.25 12.00 -17.05 -0.20 -0.45 16 22 C 0.02 0.20 6.80 -84.20 -0.57 -0.37 16 23 C -0.08 -0.82 10.11 -39.45 -0.40 -1.22 16 24 C -0.11 -1.01 10.08 -39.48 -0.40 -1.40 16 25 C -0.14 -1.51 9.98 -39.89 -0.40 -1.91 16 26 C 0.07 1.07 10.52 -16.72 -0.18 0.89 16 27 N -0.32 -5.20 2.95 -58.88 -0.17 -5.37 16 28 C 0.11 2.23 5.69 -4.76 -0.03 2.20 16 29 C 0.15 3.20 2.97 -68.28 -0.20 3.00 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.04 1.09 7.57 -51.93 -0.39 0.70 16 33 H 0.04 1.22 7.04 -51.93 -0.37 0.86 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.01 7.98 -51.93 -0.41 0.60 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.64 6.86 -51.93 -0.36 1.28 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.14 2.27 4.07 -65.59 -0.27 2.00 16 40 H 0.19 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 43 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.18 2.85 6.79 -52.48 -0.36 2.49 16 45 H 0.09 2.11 5.52 -51.93 -0.29 1.82 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -34.81 358.85 -10.94 -45.76 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.14 Total: 3.17 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -4.53 Total: 6.06 kcal Atomic # 7 Polarization: -65.87 SS G_CDS: -0.73 Total: -66.59 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.08 Total: -12.45 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -5.02 Total: 18.64 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.81 -10.94 -45.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042153131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.043 kcal (2) G-P(sol) polarization free energy of solvation -34.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds