Wall clock time and date at job start Sat Apr 11 2020 06:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 120.00204 * 2 1 4 4 H 1.48501 * 109.46634 * 275.00186 * 3 2 1 5 5 H 1.48498 * 109.47165 * 34.99636 * 3 2 1 6 6 H 1.48496 * 109.46895 * 155.00102 * 3 2 1 7 7 C 1.38811 * 119.99368 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99528 * 174.90098 * 7 2 1 9 9 N 1.36935 * 120.00442 * 354.89822 * 7 2 1 10 10 C 1.48160 * 126.39551 * 354.93989 * 9 7 2 11 11 C 1.55300 * 107.21066 * 184.87347 * 10 9 7 12 12 C 1.54215 * 101.58203 * 22.50409 * 11 10 9 13 13 H 1.08996 * 111.72558 * 78.82501 * 12 11 10 14 14 C 1.51973 * 114.95982 * 206.51010 * 12 11 10 15 15 C 1.53888 * 107.28850 * 175.44839 * 14 12 11 16 16 N 1.46590 * 110.70780 * 308.19168 * 15 14 12 17 17 C 1.34785 * 119.74800 * 227.71250 * 16 15 14 18 18 O 1.21761 * 120.00199 * 6.71186 * 17 16 15 19 19 C 1.46303 * 119.99956 * 186.70892 * 17 16 15 20 20 N 1.32512 * 125.56468 * 6.18448 * 19 17 16 21 21 C 1.32025 * 109.86727 * 179.82460 * 20 19 17 22 22 C 1.39357 * 107.92977 * 0.43546 * 21 20 19 23 23 C 1.40420 * 133.41608 * 179.73746 * 22 21 20 24 24 C 1.36325 * 119.19711 * 180.02562 * 23 22 21 25 25 C 1.40329 * 119.58009 * 359.97438 * 24 23 22 26 26 C 1.35164 * 120.39781 * 0.02562 * 25 24 23 27 27 N 1.36175 * 120.60096 * 359.97438 * 26 25 24 28 28 C 1.47797 * 120.50150 * 47.73825 * 16 15 14 29 29 C 1.45506 * 126.39526 * 174.90723 * 9 7 2 30 30 H 1.09002 * 109.57092 * 265.89374 * 29 9 7 31 31 H 0.97006 * 119.99600 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.91292 * 304.31841 * 10 9 7 33 33 H 1.08991 * 109.91938 * 65.42040 * 10 9 7 34 34 H 1.09001 * 110.96201 * 140.67587 * 11 10 9 35 35 H 1.09004 * 110.95926 * 264.42031 * 11 10 9 36 36 H 1.09003 * 109.89795 * 55.99964 * 14 12 11 37 37 H 1.09004 * 109.95768 * 294.92547 * 14 12 11 38 38 H 1.09006 * 109.22803 * 187.87624 * 15 14 12 39 39 H 1.08997 * 109.20105 * 68.48761 * 15 14 12 40 40 H 1.08003 * 126.03020 * 180.17250 * 21 20 19 41 41 H 1.08004 * 120.40019 * 0.02562 * 23 22 21 42 42 H 1.07998 * 120.21171 * 180.02562 * 24 23 22 43 43 H 1.08006 * 119.79973 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.70041 * 179.97438 * 26 25 24 45 45 H 1.09004 * 110.06809 * 189.52599 * 28 16 15 46 46 H 1.09001 * 110.06447 * 67.96533 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5046 2.6199 0.8030 6 1 3.5967 1.4118 0.5917 7 6 2.0102 -1.2022 0.0005 8 1 3.0870 -1.2041 -0.0826 9 7 1.3295 -2.3857 0.1065 10 6 -0.1261 -2.5455 0.3319 11 6 -0.4005 -4.0645 0.5027 12 6 0.9867 -4.5834 0.9322 13 1 1.1825 -4.3866 1.9862 14 6 1.2617 -6.0382 0.5892 15 6 2.7185 -6.3344 0.9869 16 7 3.6266 -5.3411 0.4060 17 6 4.7448 -5.7470 -0.2276 18 8 4.9371 -6.9332 -0.4234 19 6 5.7276 -4.7622 -0.6801 20 7 5.6892 -3.4622 -0.4262 21 6 6.7293 -2.8661 -0.9793 22 6 7.4802 -3.8376 -1.6383 23 6 8.6645 -3.7955 -2.3917 24 6 9.1582 -4.9514 -2.9195 25 6 8.4774 -6.1589 -2.7014 26 6 7.3386 -6.1801 -1.9735 27 7 6.8349 -5.0326 -1.4408 28 6 3.3255 -3.8978 0.5102 29 6 1.9007 -3.7210 0.0182 30 1 1.8201 -4.0856 -1.0059 31 1 -0.4850 0.8401 0.0004 32 1 -0.4230 -2.0107 1.2340 33 1 -0.6789 -2.1624 -0.5257 34 1 -1.1437 -4.2415 1.2802 35 1 -0.7110 -4.5132 -0.4409 36 1 1.1294 -6.1985 -0.4808 37 1 0.5858 -6.6862 1.1474 38 1 2.9940 -7.3261 0.6280 39 1 2.8058 -6.3088 2.0731 40 1 6.9556 -1.8110 -0.9331 41 1 9.1780 -2.8588 -2.5509 42 1 10.0681 -4.9380 -3.5012 43 1 8.8656 -7.0768 -3.1176 44 1 6.8235 -7.1157 -1.8130 45 1 4.0110 -3.3266 -0.1159 46 1 3.4060 -3.5730 1.5476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042153140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:27 Heat of formation + Delta-G solvation = 106.455730 kcal Electronic energy + Delta-G solvation = -30293.529373 eV Core-core repulsion = 26378.951957 eV Total energy + Delta-G solvation = -3914.577416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.00773 -39.96707 -38.14829 -37.65379 -35.21196 -33.53081 -33.00721 -31.58006 -30.89598 -29.38296 -28.66060 -28.05973 -25.03306 -24.13958 -24.08959 -23.05168 -22.23619 -21.85686 -20.25984 -19.78071 -19.27186 -17.48691 -17.09843 -16.69488 -16.49032 -16.24021 -15.75071 -15.42934 -14.86207 -14.81762 -14.65582 -14.38279 -14.00680 -13.94232 -13.48730 -13.15138 -13.03774 -12.59075 -12.51808 -12.21186 -12.04439 -11.96674 -11.83074 -11.49651 -11.23290 -10.95933 -10.80628 -10.79108 -10.68224 -10.47846 -10.17823 -10.01572 -9.85829 -9.70569 -9.55912 -9.51006 -8.92229 -8.55374 -8.44418 -7.62978 -6.76464 -5.64949 -2.97596 0.56804 0.71474 2.17159 2.27641 3.19804 3.27640 3.44966 3.46856 3.50620 3.52870 4.24272 4.27517 4.45672 4.58136 4.61721 4.68890 4.78698 5.08028 5.10330 5.24571 5.29353 5.42787 5.50093 5.56405 5.69151 5.72775 5.74729 5.83034 5.87803 5.91916 6.01910 6.12035 6.20181 6.25653 6.26799 6.29801 6.31519 6.52311 6.62324 6.71216 6.72159 6.82254 7.12725 7.14606 7.44927 7.59895 7.68233 7.72296 7.88621 8.21215 8.30837 9.26686 9.90101 10.57690 11.48277 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010893 B = 0.004269 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.887085 B = 6556.632230 C = 8846.857143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.222 4.222 8 H 0.083 0.917 9 N -0.590 5.590 10 C 0.177 3.823 11 C -0.137 4.137 12 C -0.116 4.116 13 H 0.077 0.923 14 C -0.118 4.118 15 C 0.114 3.886 16 N -0.578 5.578 17 C 0.607 3.393 18 O -0.564 6.564 19 C 0.092 3.908 20 N -0.386 5.386 21 C -0.008 4.008 22 C 0.017 3.983 23 C -0.077 4.077 24 C -0.117 4.117 25 C -0.138 4.138 26 C 0.065 3.935 27 N -0.321 5.321 28 C 0.079 3.921 29 C 0.157 3.843 30 H 0.020 0.980 31 H 0.250 0.750 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.191 0.809 41 H 0.151 0.849 42 H 0.139 0.861 43 H 0.151 0.849 44 H 0.177 0.823 45 H 0.144 0.856 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.783 -12.650 -3.099 19.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.350 4.350 8 H 0.100 0.900 9 N -0.315 5.315 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.136 4.136 13 H 0.095 0.905 14 C -0.156 4.156 15 C -0.008 4.008 16 N -0.309 5.309 17 C 0.394 3.606 18 O -0.444 6.444 19 C -0.157 4.157 20 N -0.102 5.102 21 C -0.169 4.169 22 C -0.094 4.094 23 C -0.097 4.097 24 C -0.138 4.138 25 C -0.158 4.158 26 C -0.058 4.058 27 N 0.010 4.990 28 C -0.043 4.043 29 C 0.048 3.952 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.208 0.792 41 H 0.169 0.831 42 H 0.157 0.843 43 H 0.169 0.831 44 H 0.194 0.806 45 H 0.160 0.840 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.005 -12.798 -2.638 19.154 hybrid contribution 0.937 0.662 -0.466 1.238 sum 14.942 -12.136 -3.104 19.498 Atomic orbital electron populations 1.69963 1.04912 1.24876 1.57290 1.24778 0.95611 0.97584 1.02496 0.86156 0.78843 0.83798 0.77389 1.21812 1.21850 1.20439 1.19100 0.90793 0.82260 1.42837 0.89964 1.44143 1.03554 0.99212 1.84556 1.21503 0.84314 0.88477 1.00394 1.22801 0.95407 0.99595 0.99747 1.22408 0.97468 0.93518 1.00161 0.90509 1.21796 0.94633 0.97391 1.01821 1.21644 0.89365 0.92258 0.97564 1.47927 1.20258 1.09212 1.53486 1.16194 0.80790 0.85562 0.78056 1.90764 1.78001 1.16508 1.59167 1.22386 0.93290 0.92540 1.07439 1.69979 1.19357 1.02284 1.18542 1.22973 0.92547 0.99637 1.01748 1.20021 0.97595 0.86429 1.05377 1.20583 0.92943 1.00079 0.96101 1.21145 1.00606 0.91882 1.00175 1.20946 0.94816 0.99951 1.00127 1.22049 0.96677 0.90059 0.96983 1.42397 1.17464 1.07596 1.31560 1.22918 0.99938 0.77549 1.03857 1.20967 0.91282 0.87508 0.95458 0.96311 0.93923 0.94001 0.93396 0.92298 0.92520 0.91506 0.90821 0.89351 0.91625 0.79238 0.83127 0.84269 0.83147 0.80611 0.83972 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.21 10.53 55.49 0.58 -26.63 16 2 C -0.01 -0.25 5.47 -17.43 -0.10 -0.34 16 3 Si 0.91 22.15 29.56 -169.99 -5.02 17.13 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.22 -6.12 9.89 -15.06 -0.15 -6.27 16 8 H 0.08 2.21 7.38 -52.48 -0.39 1.82 16 9 N -0.59 -15.04 3.35 -162.90 -0.55 -15.59 16 10 C 0.18 4.33 5.43 -1.91 -0.01 4.32 16 11 C -0.14 -2.60 6.58 -24.88 -0.16 -2.76 16 12 C -0.12 -2.08 2.63 -89.24 -0.23 -2.31 16 13 H 0.08 1.41 8.13 -51.93 -0.42 0.99 16 14 C -0.12 -1.73 5.72 -26.79 -0.15 -1.88 16 15 C 0.11 1.69 6.36 -3.53 -0.02 1.67 16 16 N -0.58 -10.07 3.01 -174.41 -0.52 -10.59 16 17 C 0.61 10.79 7.62 -13.02 -0.10 10.69 16 18 O -0.56 -10.25 14.70 5.13 0.08 -10.17 16 19 C 0.09 1.57 7.53 -153.90 -1.16 0.41 16 20 N -0.39 -6.69 7.44 -10.62 -0.08 -6.77 16 21 C -0.01 -0.11 12.00 -17.05 -0.20 -0.31 16 22 C 0.02 0.22 6.80 -84.21 -0.57 -0.35 16 23 C -0.08 -0.70 10.11 -39.45 -0.40 -1.09 16 24 C -0.12 -0.88 10.08 -39.48 -0.40 -1.28 16 25 C -0.14 -1.14 9.98 -39.89 -0.40 -1.54 16 26 C 0.06 0.75 10.52 -16.72 -0.18 0.58 16 27 N -0.32 -4.64 2.95 -58.89 -0.17 -4.82 16 28 C 0.08 1.55 5.22 -3.95 -0.02 1.53 16 29 C 0.16 3.34 2.77 -67.82 -0.19 3.15 16 30 H 0.02 0.45 7.90 -51.93 -0.41 0.04 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.04 1.11 7.65 -51.93 -0.40 0.72 16 33 H 0.05 1.30 7.41 -51.93 -0.38 0.91 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 36 H 0.07 1.02 7.97 -51.93 -0.41 0.61 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.28 6.92 -51.93 -0.36 0.92 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.19 2.14 8.06 -52.48 -0.42 1.71 16 41 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 42 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 43 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 44 H 0.18 2.02 6.79 -52.48 -0.36 1.67 16 45 H 0.14 2.95 3.91 -67.49 -0.26 2.69 16 46 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -33.44 362.85 -11.00 -44.43 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.33 Total: 3.34 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -4.44 Total: 4.19 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -0.74 Total: -64.39 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.44 -11.00 -44.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042153140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.889 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds