Wall clock time and date at job start Sat Apr 11 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99995 * 2 1 4 4 H 1.48501 * 109.47174 * 269.99148 * 3 2 1 5 5 H 1.48499 * 109.47459 * 29.99560 * 3 2 1 6 6 H 1.48503 * 109.47093 * 149.99260 * 3 2 1 7 7 C 1.38811 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99647 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00250 * 0.02562 * 7 2 1 10 10 C 1.47558 * 125.85986 * 0.02732 * 9 7 2 11 11 C 1.55056 * 104.85395 * 156.09030 * 10 9 7 12 12 C 1.55059 * 101.27261 * 35.96836 * 11 10 9 13 13 H 1.09001 * 106.67930 * 78.30258 * 12 11 10 14 14 C 1.48855 * 111.54621 * 194.53259 * 12 11 10 15 15 C 1.50604 * 117.90696 * 101.51205 * 14 12 11 16 16 N 1.45232 * 112.83408 * 27.68741 * 15 14 12 17 17 C 1.34780 * 119.33858 * 136.00135 * 16 15 14 18 18 O 1.21598 * 120.00371 * 176.24750 * 17 16 15 19 19 C 1.47526 * 120.00102 * 356.24003 * 17 16 15 20 20 C 1.46503 * 120.16475 * 48.73668 * 19 17 16 21 21 C 1.35534 * 119.05139 * 179.76890 * 20 19 17 22 22 C 1.41231 * 119.41811 * 0.49589 * 21 20 19 23 23 C 1.37914 * 132.97009 * 179.78170 * 22 21 20 24 24 N 1.33444 * 107.66211 * 179.97438 * 23 22 21 25 25 C 1.30741 * 109.93598 * 0.02562 * 24 23 22 26 26 N 1.35923 * 109.20935 * 359.97438 * 25 24 23 27 27 C 1.36318 * 120.16992 * 229.01789 * 19 17 16 28 28 C 1.44670 * 120.74515 * 315.60207 * 16 15 14 29 29 C 1.47629 * 125.85858 * 179.97438 * 9 7 2 30 30 H 1.08998 * 108.10220 * 64.75518 * 29 9 7 31 31 H 0.97001 * 119.99964 * 0.02562 * 1 2 3 32 32 H 1.09002 * 110.35746 * 37.24003 * 10 9 7 33 33 H 1.09004 * 110.44966 * 274.98254 * 10 9 7 34 34 H 1.08998 * 111.06721 * 153.98093 * 11 10 9 35 35 H 1.09000 * 111.07083 * 277.95951 * 11 10 9 36 36 H 1.09003 * 107.75918 * 223.64654 * 14 12 11 37 37 H 1.09005 * 107.75502 * 339.42094 * 14 12 11 38 38 H 1.09001 * 108.81145 * 148.55548 * 15 14 12 39 39 H 1.09004 * 108.81404 * 266.82158 * 15 14 12 40 40 H 1.08008 * 120.47524 * 0.02562 * 20 19 17 41 41 H 1.07991 * 120.29319 * 180.25076 * 21 20 19 42 42 H 1.07998 * 126.16850 * 359.95074 * 23 22 21 43 43 H 1.08001 * 125.39778 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.74722 * 359.95506 * 27 19 17 45 45 H 1.09000 * 109.26461 * 288.39846 * 28 16 15 46 46 H 1.08999 * 108.17329 * 170.06097 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1424 -2.5387 -0.0006 11 6 -0.3974 -3.9425 -0.6076 12 6 0.8020 -4.7422 -0.0363 13 1 0.5539 -4.9824 0.9975 14 6 0.9831 -6.0378 -0.7465 15 6 2.0715 -6.1271 -1.7835 16 7 3.1712 -5.2140 -1.5264 17 6 4.4387 -5.6520 -1.6618 18 8 5.3674 -4.8807 -1.5164 19 6 4.6993 -7.0673 -1.9864 20 6 3.9801 -7.7149 -3.0863 21 6 4.2406 -9.0148 -3.3680 22 6 5.1885 -9.7165 -2.5910 23 6 5.6574 -11.0130 -2.6252 24 7 6.5590 -11.1434 -1.6501 25 6 6.6857 -10.0127 -1.0060 26 7 5.8520 -9.0898 -1.5544 27 6 5.6064 -7.7808 -1.2609 28 6 2.9192 -3.8438 -1.1367 29 6 1.9293 -3.7352 0.0005 30 1 2.4710 -3.8636 0.9376 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6021 -1.7684 -0.6197 33 1 -0.5311 -2.4889 1.0166 34 1 -1.3445 -4.3540 -0.2588 35 1 -0.3640 -3.9106 -1.6966 36 1 1.1756 -6.8044 0.0042 37 1 0.0397 -6.2846 -1.2335 38 1 2.4576 -7.1463 -1.8010 39 1 1.6458 -5.8982 -2.7606 40 1 3.2557 -7.1631 -3.6671 41 1 3.7251 -9.5108 -4.1770 42 1 5.3500 -11.7839 -3.3163 43 1 7.3484 -9.8392 -0.1711 44 1 6.1346 -7.3058 -0.4473 45 1 2.5348 -3.2910 -1.9939 46 1 3.8647 -3.3991 -0.8265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042157129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:41 Heat of formation + Delta-G solvation = 100.926979 kcal Electronic energy + Delta-G solvation = -29677.695631 eV Core-core repulsion = 25762.878471 eV Total energy + Delta-G solvation = -3914.817160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.02569 -40.56183 -38.53136 -37.09859 -35.65392 -33.76784 -33.23891 -31.85206 -31.27250 -29.30136 -28.65589 -28.44406 -25.49636 -24.87497 -23.67030 -23.12648 -22.50269 -22.11329 -20.57884 -20.09535 -18.51332 -17.80377 -17.43072 -17.05470 -16.45301 -16.25487 -16.06219 -15.35959 -15.15305 -15.00358 -14.95002 -14.66439 -14.30046 -13.95471 -13.81558 -13.62074 -13.17883 -12.85244 -12.54796 -12.37517 -12.17792 -11.99832 -11.73783 -11.70286 -11.52705 -11.07402 -10.95806 -10.90996 -10.75987 -10.62967 -10.15625 -10.09833 -10.02914 -9.90203 -9.74256 -9.50699 -9.43903 -8.72960 -8.44531 -7.89543 -6.94486 -5.71462 -3.13833 0.40395 0.70781 2.11031 2.48345 2.78596 2.97606 3.18378 3.38170 3.43934 3.45594 4.07215 4.18311 4.27167 4.40194 4.42986 4.49776 4.61347 4.76846 4.92994 4.98087 5.08559 5.15752 5.28622 5.38748 5.44655 5.50754 5.54773 5.57790 5.73095 5.75552 5.82798 5.89580 6.00022 6.10461 6.13982 6.21123 6.22894 6.40517 6.50542 6.54027 6.71764 6.76324 6.77756 6.95600 7.41874 7.45753 7.51565 7.58638 7.79022 8.09866 8.28000 9.15135 9.75261 10.39159 11.32522 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021392 B = 0.002728 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.611603 B =10262.255172 C =11056.069278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.150 3.850 11 C -0.141 4.141 12 C -0.091 4.091 13 H 0.061 0.939 14 C -0.112 4.112 15 C 0.105 3.895 16 N -0.581 5.581 17 C 0.561 3.439 18 O -0.531 6.531 19 C -0.137 4.137 20 C -0.101 4.101 21 C -0.078 4.078 22 C 0.004 3.996 23 C -0.020 4.020 24 N -0.454 5.454 25 C 0.152 3.848 26 N -0.375 5.375 27 C 0.110 3.890 28 C 0.103 3.897 29 C 0.165 3.835 30 H 0.026 0.974 31 H 0.252 0.748 32 H 0.105 0.895 33 H 0.014 0.986 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.147 0.853 41 H 0.152 0.848 42 H 0.181 0.819 43 H 0.214 0.786 44 H 0.174 0.826 45 H 0.072 0.928 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.205 -20.325 -5.506 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.318 5.318 10 C 0.026 3.974 11 C -0.180 4.180 12 C -0.110 4.110 13 H 0.079 0.921 14 C -0.151 4.151 15 C -0.019 4.019 16 N -0.312 5.312 17 C 0.347 3.653 18 O -0.408 6.408 19 C -0.143 4.143 20 C -0.121 4.121 21 C -0.098 4.098 22 C -0.104 4.104 23 C -0.173 4.173 24 N -0.167 5.167 25 C -0.123 4.123 26 N -0.047 5.047 27 C -0.012 4.012 28 C -0.021 4.021 29 C 0.057 3.943 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.032 0.968 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.164 0.836 41 H 0.170 0.830 42 H 0.199 0.801 43 H 0.231 0.769 44 H 0.192 0.808 45 H 0.091 0.909 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.141 -20.342 -5.077 21.587 hybrid contribution -0.072 1.591 -0.015 1.592 sum 5.070 -18.751 -5.091 20.080 Atomic orbital electron populations 1.69809 1.04903 1.24890 1.57303 1.24778 0.95711 0.97725 1.02133 0.86085 0.78630 0.83232 0.77665 1.21502 1.21647 1.20609 1.19068 0.90569 0.82168 1.43465 0.90319 1.44763 1.01752 0.98843 1.86414 1.21962 0.84428 0.92699 0.98347 1.23212 0.95727 0.99018 1.00033 1.20447 0.97151 0.93585 0.99835 0.92058 1.20412 0.98626 0.97910 0.98142 1.21121 0.88061 0.93677 0.98992 1.47014 1.04814 1.13069 1.66275 1.17815 0.83324 0.86199 0.77916 1.90843 1.43027 1.56122 1.50809 1.20468 0.99639 0.95044 0.99159 1.22184 0.99128 0.94592 0.96246 1.20424 0.96360 0.93874 0.99093 1.19760 1.01113 0.95073 0.94498 1.22577 0.99470 0.94063 1.01149 1.69961 1.16997 1.22767 1.07017 1.25215 0.99964 0.83365 1.03781 1.42947 1.28949 1.08940 1.23866 1.21522 0.97468 0.81813 1.00349 1.21553 1.01653 0.79160 0.99738 1.19950 0.92071 0.87161 0.95145 0.95593 0.93688 0.87683 0.96824 0.92288 0.92251 0.92530 0.90723 0.89721 0.91822 0.83564 0.83009 0.80143 0.76932 0.80848 0.90930 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.14 10.12 55.49 0.56 -25.58 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.22 -6.05 9.77 -15.06 -0.15 -6.19 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.67 16 9 N -0.59 -14.41 3.16 -164.78 -0.52 -14.93 16 10 C 0.15 3.47 5.91 -2.38 -0.01 3.46 16 11 C -0.14 -2.45 6.24 -24.56 -0.15 -2.60 16 12 C -0.09 -1.46 2.63 -92.47 -0.24 -1.70 16 13 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 14 C -0.11 -1.33 5.55 -29.96 -0.17 -1.50 16 15 C 0.10 1.17 5.03 -5.92 -0.03 1.14 16 16 N -0.58 -8.52 3.03 -179.92 -0.54 -9.06 16 17 C 0.56 8.29 7.22 -12.47 -0.09 8.20 16 18 O -0.53 -9.85 16.31 5.28 0.09 -9.76 16 19 C -0.14 -1.54 4.97 -103.47 -0.51 -2.06 16 20 C -0.10 -0.89 7.63 -37.22 -0.28 -1.17 16 21 C -0.08 -0.61 10.09 -39.41 -0.40 -1.01 16 22 C 0.00 0.04 6.78 -84.02 -0.57 -0.53 16 23 C -0.02 -0.19 12.00 -16.97 -0.20 -0.39 16 24 N -0.45 -5.04 11.18 -13.78 -0.15 -5.20 16 25 C 0.15 1.44 12.76 -89.37 -1.14 0.30 16 26 N -0.37 -3.78 2.94 -61.93 -0.18 -3.96 16 27 C 0.11 1.14 10.58 -16.22 -0.17 0.97 16 28 C 0.10 1.91 5.46 -5.95 -0.03 1.87 16 29 C 0.17 3.26 3.28 -69.14 -0.23 3.03 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.11 2.75 5.91 -51.93 -0.31 2.44 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 37 H 0.07 0.76 7.65 -51.93 -0.40 0.37 16 38 H 0.08 0.78 4.68 -51.93 -0.24 0.54 16 39 H 0.06 0.64 7.98 -51.93 -0.41 0.23 16 40 H 0.15 1.06 6.92 -52.48 -0.36 0.70 16 41 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.21 1.24 8.06 -52.49 -0.42 0.81 16 44 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 45 H 0.07 1.47 8.07 -51.93 -0.42 1.05 16 46 H 0.09 1.79 6.84 -51.93 -0.36 1.43 16 LS Contribution 364.23 15.07 5.49 5.49 Total: -1.00 -32.97 364.23 -11.04 -44.01 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.27 Total: 0.65 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -4.48 Total: 1.50 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.84 Total: -58.74 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.97 -11.04 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042157129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.935 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds