Wall clock time and date at job start Sat Apr 11 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99995 * 2 1 4 4 H 1.48501 * 109.47174 * 269.99148 * 3 2 1 5 5 H 1.48499 * 109.47459 * 29.99560 * 3 2 1 6 6 H 1.48503 * 109.47093 * 149.99260 * 3 2 1 7 7 C 1.38811 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99647 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00250 * 0.02562 * 7 2 1 10 10 C 1.47558 * 125.85986 * 0.02732 * 9 7 2 11 11 C 1.55056 * 104.85395 * 156.09030 * 10 9 7 12 12 C 1.55059 * 101.27261 * 35.96836 * 11 10 9 13 13 H 1.09001 * 106.67930 * 78.30258 * 12 11 10 14 14 C 1.48855 * 111.54621 * 194.53259 * 12 11 10 15 15 C 1.50604 * 117.90696 * 101.51205 * 14 12 11 16 16 N 1.45232 * 112.83408 * 27.68741 * 15 14 12 17 17 C 1.34780 * 119.33858 * 136.00135 * 16 15 14 18 18 O 1.21598 * 120.00371 * 176.24750 * 17 16 15 19 19 C 1.47526 * 120.00102 * 356.24003 * 17 16 15 20 20 C 1.46503 * 120.16475 * 48.73668 * 19 17 16 21 21 C 1.35534 * 119.05139 * 179.76890 * 20 19 17 22 22 C 1.41231 * 119.41811 * 0.49589 * 21 20 19 23 23 C 1.37914 * 132.97009 * 179.78170 * 22 21 20 24 24 N 1.33444 * 107.66211 * 179.97438 * 23 22 21 25 25 C 1.30741 * 109.93598 * 0.02562 * 24 23 22 26 26 N 1.35923 * 109.20935 * 359.97438 * 25 24 23 27 27 C 1.36318 * 120.16992 * 229.01789 * 19 17 16 28 28 C 1.44670 * 120.74515 * 315.60207 * 16 15 14 29 29 C 1.47629 * 125.85858 * 179.97438 * 9 7 2 30 30 H 1.08998 * 108.10220 * 64.75518 * 29 9 7 31 31 H 0.97001 * 119.99964 * 0.02562 * 1 2 3 32 32 H 1.09002 * 110.35746 * 37.24003 * 10 9 7 33 33 H 1.09004 * 110.44966 * 274.98254 * 10 9 7 34 34 H 1.08998 * 111.06721 * 153.98093 * 11 10 9 35 35 H 1.09000 * 111.07083 * 277.95951 * 11 10 9 36 36 H 1.09003 * 107.75918 * 223.64654 * 14 12 11 37 37 H 1.09005 * 107.75502 * 339.42094 * 14 12 11 38 38 H 1.09001 * 108.81145 * 148.55548 * 15 14 12 39 39 H 1.09004 * 108.81404 * 266.82158 * 15 14 12 40 40 H 1.08008 * 120.47524 * 0.02562 * 20 19 17 41 41 H 1.07991 * 120.29319 * 180.25076 * 21 20 19 42 42 H 1.07998 * 126.16850 * 359.95074 * 23 22 21 43 43 H 1.08001 * 125.39778 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.74722 * 359.95506 * 27 19 17 45 45 H 1.09000 * 109.26461 * 288.39846 * 28 16 15 46 46 H 1.08999 * 108.17329 * 170.06097 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1424 -2.5387 -0.0006 11 6 -0.3974 -3.9425 -0.6076 12 6 0.8020 -4.7422 -0.0363 13 1 0.5539 -4.9824 0.9975 14 6 0.9831 -6.0378 -0.7465 15 6 2.0715 -6.1271 -1.7835 16 7 3.1712 -5.2140 -1.5264 17 6 4.4387 -5.6520 -1.6618 18 8 5.3674 -4.8807 -1.5164 19 6 4.6993 -7.0673 -1.9864 20 6 3.9801 -7.7149 -3.0863 21 6 4.2406 -9.0148 -3.3680 22 6 5.1885 -9.7165 -2.5910 23 6 5.6574 -11.0130 -2.6252 24 7 6.5590 -11.1434 -1.6501 25 6 6.6857 -10.0127 -1.0060 26 7 5.8520 -9.0898 -1.5544 27 6 5.6064 -7.7808 -1.2609 28 6 2.9192 -3.8438 -1.1367 29 6 1.9293 -3.7352 0.0005 30 1 2.4710 -3.8636 0.9376 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6021 -1.7684 -0.6197 33 1 -0.5311 -2.4889 1.0166 34 1 -1.3445 -4.3540 -0.2588 35 1 -0.3640 -3.9106 -1.6966 36 1 1.1756 -6.8044 0.0042 37 1 0.0397 -6.2846 -1.2335 38 1 2.4576 -7.1463 -1.8010 39 1 1.6458 -5.8982 -2.7606 40 1 3.2557 -7.1631 -3.6671 41 1 3.7251 -9.5108 -4.1770 42 1 5.3500 -11.7839 -3.3163 43 1 7.3484 -9.8392 -0.1711 44 1 6.1346 -7.3058 -0.4473 45 1 2.5348 -3.2910 -1.9939 46 1 3.8647 -3.3991 -0.8265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042157129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:40 Heat of formation + Delta-G solvation = 82.600892 kcal Electronic energy + Delta-G solvation = -29678.490310 eV Core-core repulsion = 25762.878471 eV Total energy + Delta-G solvation = -3915.611839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.73393 -41.76605 -39.90383 -37.93697 -37.04433 -34.91094 -34.42456 -33.33304 -32.32640 -30.71982 -30.23934 -29.17177 -26.77566 -26.46708 -24.72609 -24.09773 -23.62008 -22.82483 -22.20342 -21.36859 -19.43875 -18.97821 -18.82965 -18.32989 -17.51898 -17.22279 -17.00178 -16.77684 -16.50679 -16.30648 -15.87127 -15.63623 -15.57798 -15.33429 -14.95292 -14.43089 -14.22789 -14.16456 -13.95472 -13.67195 -13.49358 -13.33392 -13.12190 -12.87512 -12.71960 -12.67947 -12.61192 -12.22668 -12.02818 -11.75091 -11.70915 -11.46047 -11.36027 -11.34145 -11.19853 -10.99092 -10.75722 -10.29789 -9.71147 -8.93353 -8.57247 -7.80488 -5.24529 -0.35855 0.03255 1.24979 1.44129 1.44716 1.53532 1.55534 1.94024 2.06591 2.36112 2.46310 3.25680 3.28982 3.40423 3.55898 3.65973 3.68614 3.72483 3.81917 3.87912 3.92854 4.00544 4.22005 4.26158 4.30414 4.40032 4.47927 4.54914 4.63880 4.75062 4.80827 4.89791 4.91475 4.92937 4.97067 5.09049 5.12741 5.16549 5.33951 5.42605 5.46764 5.51980 5.55209 5.59605 5.68218 5.81831 6.05683 6.28133 6.29198 6.81843 6.93321 7.08760 7.74322 8.37764 9.21018 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021392 B = 0.002728 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.611603 B =10262.255172 C =11056.069278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.060 4.060 3 Si 0.972 3.028 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.234 4.234 8 H 0.072 0.928 9 N -0.614 5.614 10 C 0.148 3.852 11 C -0.123 4.123 12 C -0.080 4.080 13 H 0.060 0.940 14 C -0.112 4.112 15 C 0.099 3.901 16 N -0.580 5.580 17 C 0.563 3.437 18 O -0.579 6.579 19 C -0.144 4.144 20 C -0.110 4.110 21 C -0.060 4.060 22 C -0.014 4.014 23 C -0.024 4.024 24 N -0.484 5.484 25 C 0.149 3.851 26 N -0.381 5.381 27 C 0.112 3.888 28 C 0.124 3.876 29 C 0.163 3.837 30 H 0.005 0.995 31 H 0.248 0.752 32 H 0.072 0.928 33 H -0.014 1.014 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.166 0.834 41 H 0.189 0.811 42 H 0.206 0.794 43 H 0.240 0.760 44 H 0.179 0.821 45 H 0.053 0.947 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.739 -23.558 -6.954 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.253 4.253 3 Si 0.801 3.199 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.363 4.363 8 H 0.090 0.910 9 N -0.338 5.338 10 C 0.024 3.976 11 C -0.161 4.161 12 C -0.099 4.099 13 H 0.079 0.921 14 C -0.150 4.150 15 C -0.023 4.023 16 N -0.310 5.310 17 C 0.351 3.649 18 O -0.460 6.460 19 C -0.151 4.151 20 C -0.131 4.131 21 C -0.079 4.079 22 C -0.121 4.121 23 C -0.176 4.176 24 N -0.198 5.198 25 C -0.126 4.126 26 N -0.053 5.053 27 C -0.011 4.011 28 C -0.001 4.001 29 C 0.055 3.945 30 H 0.023 0.977 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.004 0.996 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.183 0.817 41 H 0.206 0.794 42 H 0.222 0.778 43 H 0.256 0.744 44 H 0.196 0.804 45 H 0.071 0.929 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.664 -23.639 -6.541 24.967 hybrid contribution 0.158 2.520 0.485 2.571 sum 4.822 -21.120 -6.056 22.494 Atomic orbital electron populations 1.70043 1.05923 1.25014 1.58391 1.25513 0.96584 1.00558 1.02676 0.85169 0.77557 0.79602 0.77579 1.21123 1.21733 1.20120 1.19287 0.90622 0.83722 1.42653 0.90986 1.45015 1.02649 0.99905 1.86276 1.21796 0.83603 0.95692 0.96545 1.23071 0.97685 0.95164 1.00200 1.20424 0.94435 0.94331 1.00713 0.92125 1.20427 1.00477 0.95260 0.98826 1.21480 0.86811 0.94249 0.99752 1.46999 1.06179 1.11884 1.65909 1.18320 0.82527 0.87431 0.76600 1.90816 1.44450 1.57833 1.52901 1.20181 1.01175 0.92883 1.00872 1.22302 0.99815 0.95057 0.95876 1.20817 0.94994 0.93238 0.98857 1.20197 1.01747 0.95352 0.94823 1.23083 0.98798 0.94741 1.00993 1.69991 1.18082 1.23613 1.08077 1.25835 0.99775 0.82916 1.04026 1.43040 1.29279 1.08747 1.24263 1.21552 0.97038 0.82067 1.00395 1.20910 0.99410 0.81555 0.98251 1.20093 0.93525 0.86381 0.94457 0.97711 0.94261 0.91036 0.99632 0.89250 0.91362 0.90650 0.87571 0.86834 0.89796 0.81686 0.79353 0.77762 0.74394 0.80405 0.92881 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.72 10.12 21.65 0.22 -55.50 16 2 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 3 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.23 -13.15 9.77 84.03 0.82 -12.33 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.61 -31.01 3.16 -675.23 -2.13 -33.15 16 10 C 0.15 7.06 5.91 86.88 0.51 7.57 16 11 C -0.12 -4.05 6.24 32.00 0.20 -3.85 16 12 C -0.08 -2.41 2.63 -11.99 -0.03 -2.44 16 13 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 14 C -0.11 -2.18 5.55 28.50 0.16 -2.02 16 15 C 0.10 1.84 5.03 85.84 0.43 2.27 16 16 N -0.58 -16.40 3.03 -841.40 -2.55 -18.95 16 17 C 0.56 16.36 7.22 86.69 0.63 16.99 16 18 O -0.58 -22.21 16.31 -4.03 -0.07 -22.28 16 19 C -0.14 -2.98 4.97 -19.12 -0.10 -3.07 16 20 C -0.11 -1.53 7.63 23.80 0.18 -1.35 16 21 C -0.06 -0.68 10.09 22.38 0.23 -0.45 16 22 C -0.01 -0.22 6.78 38.81 0.26 0.04 16 23 C -0.02 -0.40 12.00 84.37 1.01 0.62 16 24 N -0.48 -9.77 11.18 -197.51 -2.21 -11.98 16 25 C 0.15 2.54 12.76 179.91 2.30 4.84 16 26 N -0.38 -6.85 2.94 -349.86 -1.03 -7.88 16 27 C 0.11 2.13 10.58 83.54 0.88 3.01 16 28 C 0.12 4.73 5.46 86.12 0.47 5.20 16 29 C 0.16 6.57 3.28 43.59 0.14 6.71 16 30 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.07 3.90 5.91 -2.39 -0.01 3.88 16 33 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 37 H 0.11 1.53 7.65 -2.38 -0.02 1.51 16 38 H 0.11 1.55 4.68 -2.39 -0.01 1.54 16 39 H 0.08 1.29 7.98 -2.39 -0.02 1.27 16 40 H 0.17 1.65 6.92 -2.91 -0.02 1.63 16 41 H 0.19 0.69 8.06 -2.92 -0.02 0.67 16 42 H 0.21 2.06 8.06 -2.91 -0.02 2.04 16 43 H 0.24 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.18 3.06 8.06 -2.91 -0.02 3.04 16 45 H 0.05 2.22 8.07 -2.39 -0.02 2.20 16 46 H 0.05 2.41 6.84 -2.39 -0.02 2.39 16 Total: -1.00 -77.24 364.23 3.83 -73.42 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 1.00 Total: 9.18 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 8.56 Total: 18.75 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -7.70 Total: -127.45 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.07 Total: -22.28 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -77.24 3.83 -73.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042157129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.017 kcal (2) G-P(sol) polarization free energy of solvation -77.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds