Wall clock time and date at job start Sat Apr 11 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00225 * 2 1 4 4 H 1.48507 * 109.46951 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47273 * 300.00062 * 3 2 1 6 6 H 1.48504 * 109.46884 * 59.99991 * 3 2 1 7 7 C 1.38816 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00393 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99661 * 0.02562 * 7 2 1 10 10 C 1.48157 * 126.40175 * 0.04225 * 9 7 2 11 11 C 1.55299 * 107.04487 * 184.96866 * 10 9 7 12 12 C 1.53706 * 101.81438 * 22.43927 * 11 10 9 13 13 H 1.09012 * 111.10377 * 78.60842 * 12 11 10 14 14 C 1.51977 * 114.99634 * 206.54507 * 12 11 10 15 15 C 1.53891 * 107.28636 * 175.43472 * 14 12 11 16 16 N 1.46636 * 110.80005 * 308.25821 * 15 14 12 17 17 C 1.34775 * 119.78193 * 227.68415 * 16 15 14 18 18 O 1.21717 * 120.00319 * 174.20579 * 17 16 15 19 19 C 1.46568 * 119.99928 * 354.20291 * 17 16 15 20 20 C 1.40556 * 126.58227 * 320.71400 * 19 17 16 21 21 N 1.30735 * 108.74650 * 179.85502 * 20 19 17 22 22 N 1.40017 * 109.60589 * 0.41864 * 21 20 19 23 23 C 1.36244 * 132.01475 * 179.68545 * 22 21 20 24 24 C 1.35185 * 120.70467 * 180.02562 * 23 22 21 25 25 C 1.40166 * 120.31902 * 0.04152 * 24 23 22 26 26 C 1.36446 * 119.41058 * 359.97438 * 25 24 23 27 27 C 1.36573 * 107.90319 * 359.73501 * 22 21 20 28 28 C 1.47793 * 120.46051 * 47.53807 * 16 15 14 29 29 C 1.45508 * 126.39431 * 180.02562 * 9 7 2 30 30 H 1.09003 * 109.56866 * 265.87639 * 29 9 7 31 31 H 0.97001 * 119.99302 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.91667 * 304.31234 * 10 9 7 33 33 H 1.09000 * 109.91923 * 65.61809 * 10 9 7 34 34 H 1.08997 * 110.96114 * 140.57199 * 11 10 9 35 35 H 1.09001 * 110.95474 * 264.31649 * 11 10 9 36 36 H 1.09001 * 109.89462 * 294.87415 * 14 12 11 37 37 H 1.08994 * 109.89490 * 55.91766 * 14 12 11 38 38 H 1.09001 * 109.23130 * 68.51024 * 15 14 12 39 39 H 1.09002 * 109.22378 * 187.91092 * 15 14 12 40 40 H 1.08002 * 125.62526 * 0.02985 * 20 19 17 41 41 H 1.07996 * 119.64391 * 0.02562 * 23 22 21 42 42 H 1.07992 * 119.83911 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.28965 * 179.97438 * 25 24 23 44 44 H 1.07997 * 120.37471 * 179.97438 * 26 25 24 45 45 H 1.09000 * 110.06520 * 189.66810 * 28 16 15 46 46 H 1.08998 * 110.06594 * 68.21445 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1469 -2.5532 -0.0032 11 6 -0.4345 -4.0739 0.1247 12 6 0.8675 -4.5882 0.7593 13 1 0.8898 -4.3837 1.8299 14 6 1.1969 -6.0416 0.4611 15 6 2.5764 -6.3336 1.0775 16 7 3.5610 -5.3362 0.6463 17 6 4.7653 -5.7370 0.1928 18 8 5.5454 -4.9222 -0.2643 19 6 5.1355 -7.1540 0.2502 20 6 4.8512 -8.0525 1.2929 21 7 5.3388 -9.2250 0.9819 22 7 5.9710 -9.1550 -0.2655 23 6 6.6254 -10.0899 -1.0098 24 6 7.1608 -9.7667 -2.2084 25 6 7.0504 -8.4601 -2.7035 26 6 6.3971 -7.5168 -1.9653 27 6 5.8499 -7.8751 -0.7264 28 6 3.2410 -3.8945 0.7025 29 6 1.9081 -3.7214 -0.0017 30 1 1.9874 -4.0851 -1.0263 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5811 -2.0207 0.8430 33 1 -0.5621 -2.1738 -0.9369 34 1 -1.2862 -4.2559 0.7801 35 1 -0.5950 -4.5240 -0.8550 36 1 0.4454 -6.6917 0.9091 37 1 1.2298 -6.2008 -0.6167 38 1 2.4963 -6.3099 2.1643 39 1 2.9075 -7.3235 0.7635 40 1 4.3156 -7.8144 2.2001 41 1 6.7174 -11.0997 -0.6384 42 1 7.6763 -10.5189 -2.7869 43 1 7.4787 -8.2024 -3.6609 44 1 6.3032 -6.5052 -2.3316 45 1 4.0125 -3.3199 0.1899 46 1 3.1605 -3.5694 1.7398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042271628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:45 Heat of formation + Delta-G solvation = 113.248338 kcal Electronic energy + Delta-G solvation = -29788.347314 eV Core-core repulsion = 25874.064448 eV Total energy + Delta-G solvation = -3914.282866 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.41712 -39.91996 -38.09590 -37.43946 -35.26605 -33.24935 -32.82816 -31.23269 -31.10598 -29.98072 -28.70333 -28.12347 -24.76947 -24.31586 -24.18254 -22.97692 -22.29155 -21.92505 -20.10842 -19.73840 -19.06120 -17.76588 -17.00985 -16.68893 -16.42326 -16.19903 -15.79400 -15.42386 -15.00774 -14.85007 -14.56976 -14.27791 -13.99763 -13.73513 -13.38319 -13.22867 -12.90567 -12.63708 -12.52953 -12.29067 -12.22874 -12.05029 -11.82415 -11.47765 -11.25957 -11.13341 -10.91103 -10.77083 -10.73902 -10.68316 -10.08201 -9.91681 -9.84899 -9.69266 -9.66343 -9.56508 -9.41209 -8.59350 -8.34201 -7.86859 -6.81081 -5.68104 -3.01459 0.36401 0.71195 1.85988 2.07442 2.90120 3.13529 3.44028 3.48221 3.50767 3.53239 3.91921 4.25589 4.37247 4.51485 4.54931 4.75228 4.87865 4.97017 5.07320 5.10487 5.11420 5.22390 5.31306 5.45018 5.56881 5.66160 5.68001 5.74528 5.82833 5.86322 5.97810 6.01635 6.06563 6.10710 6.15982 6.20540 6.23376 6.44988 6.49229 6.56294 6.61918 6.79201 6.83637 7.12121 7.17841 7.59562 7.63841 7.71528 7.85394 8.27079 8.48163 9.23298 9.86262 10.53154 11.44384 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017379 B = 0.002957 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.768379 B = 9465.342685 C =10364.611226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.081 0.919 9 N -0.592 5.592 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.113 4.113 13 H 0.077 0.923 14 C -0.118 4.118 15 C 0.106 3.894 16 N -0.601 5.601 17 C 0.594 3.406 18 O -0.545 6.545 19 C -0.298 4.298 20 C 0.117 3.883 21 N -0.321 5.321 22 N -0.268 5.268 23 C 0.108 3.892 24 C -0.160 4.160 25 C -0.079 4.079 26 C -0.104 4.104 27 C 0.154 3.846 28 C 0.119 3.881 29 C 0.157 3.843 30 H 0.023 0.977 31 H 0.251 0.749 32 H 0.055 0.945 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.200 0.800 41 H 0.171 0.829 42 H 0.157 0.843 43 H 0.145 0.855 44 H 0.156 0.844 45 H 0.093 0.907 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.303 -23.234 -1.503 25.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.098 0.902 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.133 4.133 13 H 0.096 0.904 14 C -0.157 4.157 15 C -0.017 4.017 16 N -0.334 5.334 17 C 0.383 3.617 18 O -0.424 6.424 19 C -0.313 4.313 20 C -0.063 4.063 21 N -0.142 5.142 22 N -0.032 5.032 23 C -0.018 4.018 24 C -0.181 4.181 25 C -0.102 4.102 26 C -0.123 4.123 27 C 0.034 3.966 28 C -0.003 4.003 29 C 0.048 3.952 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.216 0.784 41 H 0.188 0.812 42 H 0.175 0.825 43 H 0.163 0.837 44 H 0.173 0.827 45 H 0.111 0.889 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.725 -23.756 -1.208 25.697 hybrid contribution 0.196 1.638 -0.191 1.661 sum 9.921 -22.117 -1.398 24.280 Atomic orbital electron populations 1.69960 1.04886 1.24879 1.57261 1.24781 0.95678 0.97629 1.02289 0.86074 0.78948 0.83844 0.77166 1.20344 1.21810 1.21816 1.19111 0.90495 0.82255 1.43488 0.90168 1.44185 1.01650 0.99231 1.86663 1.21539 0.83714 0.88483 1.00938 1.22730 0.96042 0.99657 0.99218 1.22278 0.97389 0.93447 1.00209 0.90432 1.21785 0.95312 0.97377 1.01213 1.21885 0.89272 0.91735 0.98845 1.48071 1.13441 1.07711 1.64158 1.16965 0.81460 0.85955 0.77365 1.90792 1.50927 1.54390 1.46259 1.19774 1.16498 0.96448 0.98567 1.24131 0.94748 0.88827 0.98573 1.77571 1.19869 1.22353 0.94420 1.46028 1.35293 1.07635 1.14269 1.21552 0.94451 0.94383 0.91445 1.20924 1.03429 0.98361 0.95416 1.21311 0.96521 0.92241 1.00112 1.20821 0.97989 1.01995 0.91517 1.19285 0.97221 0.84976 0.95139 1.21695 0.99040 0.78262 1.01334 1.20969 0.91097 0.87494 0.95664 0.95935 0.93868 0.92633 0.94495 0.92271 0.92641 0.90949 0.91526 0.91793 0.90115 0.78376 0.81198 0.82535 0.83687 0.82658 0.88909 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.18 10.44 55.49 0.58 -26.60 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 7 C -0.23 -6.29 9.88 -15.06 -0.15 -6.44 16 8 H 0.08 2.20 7.41 -52.49 -0.39 1.81 16 9 N -0.59 -15.05 3.35 -162.93 -0.55 -15.59 16 10 C 0.18 4.28 5.45 -1.91 -0.01 4.27 16 11 C -0.14 -2.54 6.54 -25.15 -0.16 -2.70 16 12 C -0.11 -1.94 2.61 -89.53 -0.23 -2.17 16 13 H 0.08 1.36 8.13 -51.92 -0.42 0.93 16 14 C -0.12 -1.58 5.72 -26.79 -0.15 -1.73 16 15 C 0.11 1.32 5.12 -3.50 -0.02 1.30 16 16 N -0.60 -9.68 3.02 -174.31 -0.53 -10.20 16 17 C 0.59 10.11 7.53 -12.90 -0.10 10.01 16 18 O -0.55 -11.19 16.41 5.17 0.08 -11.10 16 19 C -0.30 -4.22 5.18 -104.68 -0.54 -4.76 16 20 C 0.12 1.37 9.57 -17.14 -0.16 1.21 16 21 N -0.32 -3.91 12.57 30.75 0.39 -3.53 16 22 N -0.27 -3.05 3.86 -10.55 -0.04 -3.09 16 23 C 0.11 0.81 11.17 -16.68 -0.19 0.62 16 24 C -0.16 -0.92 9.98 -39.94 -0.40 -1.32 16 25 C -0.08 -0.57 10.09 -39.50 -0.40 -0.97 16 26 C -0.10 -1.14 10.06 -39.53 -0.40 -1.54 16 27 C 0.15 2.00 6.77 -84.07 -0.57 1.43 16 28 C 0.12 2.30 5.70 -3.97 -0.02 2.28 16 29 C 0.16 3.27 2.77 -67.85 -0.19 3.08 16 30 H 0.02 0.52 7.90 -51.93 -0.41 0.11 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.06 1.48 7.21 -51.93 -0.37 1.10 16 33 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.94 7.97 -51.93 -0.41 0.53 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.90 4.97 -51.93 -0.26 0.64 16 40 H 0.20 1.74 7.27 -52.49 -0.38 1.36 16 41 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.16 0.33 8.06 -52.49 -0.42 -0.09 16 43 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.16 1.83 8.02 -52.49 -0.42 1.41 16 45 H 0.09 2.03 6.74 -51.93 -0.35 1.68 16 46 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -35.04 366.70 -9.69 -44.73 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.34 Total: 0.13 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -3.79 Total: 2.26 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.15 Total: -59.01 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.04 -9.69 -44.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042271628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.975 kcal (2) G-P(sol) polarization free energy of solvation -35.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds