Wall clock time and date at job start Sat Apr 11 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00225 * 2 1 4 4 H 1.48507 * 109.46951 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47273 * 300.00062 * 3 2 1 6 6 H 1.48504 * 109.46884 * 59.99991 * 3 2 1 7 7 C 1.38816 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00393 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99661 * 0.02562 * 7 2 1 10 10 C 1.48157 * 126.40175 * 0.04225 * 9 7 2 11 11 C 1.55299 * 107.04487 * 184.96866 * 10 9 7 12 12 C 1.53706 * 101.81438 * 22.43927 * 11 10 9 13 13 H 1.09012 * 111.10377 * 78.60842 * 12 11 10 14 14 C 1.51977 * 114.99634 * 206.54507 * 12 11 10 15 15 C 1.53891 * 107.28636 * 175.43472 * 14 12 11 16 16 N 1.46636 * 110.80005 * 308.25821 * 15 14 12 17 17 C 1.34775 * 119.78193 * 227.68415 * 16 15 14 18 18 O 1.21717 * 120.00319 * 174.20579 * 17 16 15 19 19 C 1.46568 * 119.99928 * 354.20291 * 17 16 15 20 20 C 1.40556 * 126.58227 * 320.71400 * 19 17 16 21 21 N 1.30735 * 108.74650 * 179.85502 * 20 19 17 22 22 N 1.40017 * 109.60589 * 0.41864 * 21 20 19 23 23 C 1.36244 * 132.01475 * 179.68545 * 22 21 20 24 24 C 1.35185 * 120.70467 * 180.02562 * 23 22 21 25 25 C 1.40166 * 120.31902 * 0.04152 * 24 23 22 26 26 C 1.36446 * 119.41058 * 359.97438 * 25 24 23 27 27 C 1.36573 * 107.90319 * 359.73501 * 22 21 20 28 28 C 1.47793 * 120.46051 * 47.53807 * 16 15 14 29 29 C 1.45508 * 126.39431 * 180.02562 * 9 7 2 30 30 H 1.09003 * 109.56866 * 265.87639 * 29 9 7 31 31 H 0.97001 * 119.99302 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.91667 * 304.31234 * 10 9 7 33 33 H 1.09000 * 109.91923 * 65.61809 * 10 9 7 34 34 H 1.08997 * 110.96114 * 140.57199 * 11 10 9 35 35 H 1.09001 * 110.95474 * 264.31649 * 11 10 9 36 36 H 1.09001 * 109.89462 * 294.87415 * 14 12 11 37 37 H 1.08994 * 109.89490 * 55.91766 * 14 12 11 38 38 H 1.09001 * 109.23130 * 68.51024 * 15 14 12 39 39 H 1.09002 * 109.22378 * 187.91092 * 15 14 12 40 40 H 1.08002 * 125.62526 * 0.02985 * 20 19 17 41 41 H 1.07996 * 119.64391 * 0.02562 * 23 22 21 42 42 H 1.07992 * 119.83911 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.28965 * 179.97438 * 25 24 23 44 44 H 1.07997 * 120.37471 * 179.97438 * 26 25 24 45 45 H 1.09000 * 110.06520 * 189.66810 * 28 16 15 46 46 H 1.08998 * 110.06594 * 68.21445 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1469 -2.5532 -0.0032 11 6 -0.4345 -4.0739 0.1247 12 6 0.8675 -4.5882 0.7593 13 1 0.8898 -4.3837 1.8299 14 6 1.1969 -6.0416 0.4611 15 6 2.5764 -6.3336 1.0775 16 7 3.5610 -5.3362 0.6463 17 6 4.7653 -5.7370 0.1928 18 8 5.5454 -4.9222 -0.2643 19 6 5.1355 -7.1540 0.2502 20 6 4.8512 -8.0525 1.2929 21 7 5.3388 -9.2250 0.9819 22 7 5.9710 -9.1550 -0.2655 23 6 6.6254 -10.0899 -1.0098 24 6 7.1608 -9.7667 -2.2084 25 6 7.0504 -8.4601 -2.7035 26 6 6.3971 -7.5168 -1.9653 27 6 5.8499 -7.8751 -0.7264 28 6 3.2410 -3.8945 0.7025 29 6 1.9081 -3.7214 -0.0017 30 1 1.9874 -4.0851 -1.0263 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5811 -2.0207 0.8430 33 1 -0.5621 -2.1738 -0.9369 34 1 -1.2862 -4.2559 0.7801 35 1 -0.5950 -4.5240 -0.8550 36 1 0.4454 -6.6917 0.9091 37 1 1.2298 -6.2008 -0.6167 38 1 2.4963 -6.3099 2.1643 39 1 2.9075 -7.3235 0.7635 40 1 4.3156 -7.8144 2.2001 41 1 6.7174 -11.0997 -0.6384 42 1 7.6763 -10.5189 -2.7869 43 1 7.4787 -8.2024 -3.6609 44 1 6.3032 -6.5052 -2.3316 45 1 4.0125 -3.3199 0.1899 46 1 3.1605 -3.5694 1.7398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042271628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:44 Heat of formation + Delta-G solvation = 90.477347 kcal Electronic energy + Delta-G solvation = -29789.334738 eV Core-core repulsion = 25874.064448 eV Total energy + Delta-G solvation = -3915.270290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.23057 -41.28122 -39.54648 -38.22994 -36.78696 -34.65710 -34.03436 -32.87177 -31.87116 -31.34000 -30.27116 -29.34098 -26.55517 -25.76142 -24.90035 -23.93336 -23.59950 -22.95943 -21.79889 -21.26913 -20.26375 -18.86554 -18.44918 -17.75547 -17.44595 -17.14877 -16.94244 -16.58046 -16.44584 -16.11862 -15.74051 -15.65393 -15.62636 -15.05745 -14.77766 -14.37146 -14.35619 -13.89461 -13.77649 -13.54743 -13.16512 -13.13935 -13.08002 -12.97571 -12.86617 -12.74368 -12.48186 -12.11198 -11.99940 -11.97743 -11.76083 -11.59323 -11.53171 -11.31994 -11.01212 -10.89362 -10.73770 -10.45922 -9.67749 -8.90882 -8.70573 -7.86661 -5.21415 -0.34621 -0.00865 1.10334 1.14143 1.43478 1.43854 1.54962 1.85557 2.12714 2.44986 2.49553 3.14302 3.31616 3.48492 3.52260 3.76165 3.85636 3.86967 3.94347 3.99427 4.00874 4.10598 4.25018 4.29764 4.32933 4.40163 4.50275 4.54372 4.63039 4.69851 4.76042 4.85195 4.90848 4.93288 5.04070 5.11291 5.15342 5.19742 5.23131 5.27807 5.39606 5.41737 5.51686 5.63288 5.66394 5.76954 5.78296 6.19051 6.35918 6.47216 7.08193 7.20439 7.76250 8.43429 9.24582 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017379 B = 0.002957 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.768379 B = 9465.342685 C =10364.611226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.062 4.062 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.613 5.613 10 C 0.181 3.819 11 C -0.122 4.122 12 C -0.095 4.095 13 H 0.081 0.919 14 C -0.109 4.109 15 C 0.102 3.898 16 N -0.599 5.599 17 C 0.593 3.407 18 O -0.598 6.598 19 C -0.340 4.340 20 C 0.129 3.871 21 N -0.336 5.336 22 N -0.270 5.270 23 C 0.099 3.901 24 C -0.144 4.144 25 C -0.048 4.048 26 C -0.151 4.151 27 C 0.144 3.856 28 C 0.132 3.868 29 C 0.149 3.851 30 H 0.003 0.997 31 H 0.247 0.753 32 H 0.025 0.975 33 H -0.002 1.002 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.225 0.775 41 H 0.205 0.795 42 H 0.207 0.793 43 H 0.177 0.823 44 H 0.132 0.868 45 H 0.055 0.945 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.299 -27.658 -1.394 29.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.255 4.255 3 Si 0.801 3.199 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.364 4.364 8 H 0.092 0.908 9 N -0.338 5.338 10 C 0.056 3.944 11 C -0.160 4.160 12 C -0.115 4.115 13 H 0.099 0.901 14 C -0.147 4.147 15 C -0.019 4.019 16 N -0.331 5.331 17 C 0.384 3.616 18 O -0.480 6.480 19 C -0.355 4.355 20 C -0.050 4.050 21 N -0.157 5.157 22 N -0.034 5.034 23 C -0.026 4.026 24 C -0.164 4.164 25 C -0.071 4.071 26 C -0.171 4.171 27 C 0.023 3.977 28 C 0.009 3.991 29 C 0.041 3.959 30 H 0.020 0.980 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.017 0.983 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.241 0.759 41 H 0.222 0.778 42 H 0.224 0.776 43 H 0.195 0.805 44 H 0.150 0.850 45 H 0.074 0.926 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.714 -28.251 -1.083 30.233 hybrid contribution 0.042 2.864 -0.418 2.895 sum 10.756 -25.386 -1.500 27.612 Atomic orbital electron populations 1.70159 1.06060 1.25159 1.58385 1.25556 0.96587 1.00675 1.02728 0.85100 0.78043 0.79874 0.76921 1.19638 1.21837 1.21413 1.19357 0.90607 0.83773 1.42709 0.90761 1.44452 1.02578 1.00301 1.86456 1.21362 0.82877 0.92488 0.97628 1.22608 0.97748 0.94875 1.00795 1.22205 0.94580 0.95217 0.99508 0.90104 1.21782 0.96780 0.94881 1.01287 1.22196 0.87754 0.91450 1.00493 1.48090 1.14228 1.06669 1.64113 1.17446 0.80983 0.87056 0.76151 1.90745 1.52477 1.56058 1.48689 1.19488 1.20021 0.95071 1.00939 1.24432 0.94073 0.87955 0.98541 1.77504 1.20697 1.22414 0.95100 1.46283 1.35274 1.07624 1.14200 1.22480 0.93269 0.95216 0.91670 1.21549 1.01802 0.98328 0.94752 1.21824 0.92965 0.92077 1.00208 1.20811 1.01503 1.02295 0.92457 1.19466 0.96900 0.85797 0.95521 1.21260 0.96996 0.80551 1.00327 1.21089 0.93264 0.86175 0.95388 0.97986 0.94350 0.95703 0.98329 0.89362 0.91488 0.86767 0.92314 0.88918 0.88040 0.75914 0.77780 0.77644 0.80514 0.85043 0.92610 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.47 10.44 21.65 0.23 -58.24 16 2 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16 3 Si 0.97 48.02 29.55 68.60 2.03 50.04 16 4 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.24 -13.83 9.88 84.03 0.83 -13.00 16 8 H 0.07 4.33 7.41 -2.91 -0.02 4.31 16 9 N -0.61 -32.73 3.35 -669.40 -2.24 -34.97 16 10 C 0.18 9.12 5.45 86.85 0.47 9.59 16 11 C -0.12 -4.38 6.54 31.62 0.21 -4.17 16 12 C -0.10 -3.15 2.61 -10.08 -0.03 -3.18 16 13 H 0.08 2.67 8.13 -2.38 -0.02 2.65 16 14 C -0.11 -2.59 5.72 30.56 0.17 -2.41 16 15 C 0.10 2.32 5.12 86.65 0.44 2.77 16 16 N -0.60 -19.65 3.02 -823.59 -2.48 -22.13 16 17 C 0.59 21.17 7.53 86.42 0.65 21.82 16 18 O -0.60 -26.63 16.41 -4.40 -0.07 -26.71 16 19 C -0.34 -9.71 5.18 -19.90 -0.10 -9.81 16 20 C 0.13 2.85 9.57 85.42 0.82 3.67 16 21 N -0.34 -7.49 12.57 -56.62 -0.71 -8.21 16 22 N -0.27 -5.58 3.86 -187.28 -0.72 -6.30 16 23 C 0.10 1.09 11.17 83.30 0.93 2.02 16 24 C -0.14 -0.95 9.98 22.03 0.22 -0.73 16 25 C -0.05 -0.55 10.09 22.32 0.23 -0.33 16 26 C -0.15 -3.33 10.06 22.30 0.22 -3.11 16 27 C 0.14 3.71 6.77 39.50 0.27 3.98 16 28 C 0.13 5.40 5.70 85.72 0.49 5.89 16 29 C 0.15 6.44 2.77 45.58 0.13 6.57 16 30 H 0.00 0.13 7.90 -2.39 -0.02 0.11 16 31 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.02 1.38 7.21 -2.39 -0.02 1.36 16 33 H 0.00 -0.09 7.77 -2.39 -0.02 -0.11 16 34 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 36 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 1.53 7.97 -2.39 -0.02 1.51 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.10 1.98 4.97 -2.39 -0.01 1.97 16 40 H 0.22 3.35 7.27 -2.91 -0.02 3.33 16 41 H 0.21 0.75 8.06 -2.91 -0.02 0.73 16 42 H 0.21 -0.59 8.06 -2.91 -0.02 -0.62 16 43 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 44 H 0.13 3.44 8.02 -2.91 -0.02 3.42 16 45 H 0.06 2.66 6.74 -2.39 -0.02 2.65 16 46 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -85.37 366.70 3.43 -81.94 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.00 Total: 8.22 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 6.41 Total: 16.35 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -5.93 Total: -129.85 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.07 Total: -26.71 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.04 kcal Total: -85.37 3.43 -81.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042271628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.418 kcal (2) G-P(sol) polarization free energy of solvation -85.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds