Wall clock time and date at job start Sat Apr 11 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99752 * 2 1 4 4 H 1.48503 * 109.47206 * 240.00270 * 3 2 1 5 5 H 1.48502 * 109.47033 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47111 * 120.00355 * 3 2 1 7 7 C 1.38808 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00229 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99865 * 0.02562 * 7 2 1 10 10 C 1.47437 * 126.05871 * 359.96771 * 9 7 2 11 11 C 1.54499 * 107.14624 * 181.65112 * 10 9 7 12 12 C 1.56113 * 102.62385 * 22.83617 * 11 10 9 13 13 H 1.08997 * 113.55099 * 202.61622 * 12 11 10 14 14 C 1.53102 * 106.34633 * 78.37082 * 12 11 10 15 15 C 1.52838 * 110.53795 * 195.42324 * 14 12 11 16 16 N 1.47152 * 107.97958 * 57.36981 * 15 14 12 17 17 C 1.34776 * 121.21380 * 122.69628 * 16 15 14 18 18 O 1.21719 * 120.00228 * 175.69702 * 17 16 15 19 19 C 1.46564 * 120.00001 * 355.70003 * 17 16 15 20 20 C 1.40551 * 126.58551 * 49.45074 * 19 17 16 21 21 N 1.30733 * 108.75112 * 179.97438 * 20 19 17 22 22 N 1.40022 * 109.60442 * 359.97438 * 21 20 19 23 23 C 1.36236 * 132.01563 * 180.02562 * 22 21 20 24 24 C 1.35188 * 120.70711 * 179.97438 * 23 22 21 25 25 C 1.40163 * 120.31686 * 359.97438 * 24 23 22 26 26 C 1.36444 * 119.41156 * 0.02874 * 25 24 23 27 27 C 1.36585 * 107.90079 * 359.76737 * 22 21 20 28 28 C 1.46757 * 117.57127 * 302.71399 * 16 15 14 29 29 C 1.46459 * 126.06096 * 179.97438 * 9 7 2 30 30 H 1.08996 * 108.42763 * 269.21515 * 29 9 7 31 31 H 0.96999 * 120.00547 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.90203 * 301.03466 * 10 9 7 33 33 H 1.08998 * 109.89615 * 62.09165 * 10 9 7 34 34 H 1.08999 * 110.78106 * 141.13166 * 11 10 9 35 35 H 1.09002 * 110.77861 * 264.37361 * 11 10 9 36 36 H 1.08994 * 109.25641 * 75.15856 * 14 12 11 37 37 H 1.08998 * 109.25197 * 315.68432 * 14 12 11 38 38 H 1.09003 * 109.75895 * 176.99285 * 15 14 12 39 39 H 1.09003 * 109.76121 * 297.69699 * 15 14 12 40 40 H 1.08003 * 125.62140 * 359.97438 * 20 19 17 41 41 H 1.07999 * 119.64422 * 359.97438 * 23 22 21 42 42 H 1.07999 * 119.83852 * 180.02562 * 24 23 22 43 43 H 1.08005 * 120.29081 * 180.02562 * 25 24 23 44 44 H 1.07997 * 120.37234 * 179.97438 * 26 25 24 45 45 H 1.09001 * 109.22648 * 172.83659 * 28 16 15 46 46 H 1.09000 * 109.23320 * 292.19532 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1405 -2.5438 0.0007 11 6 -0.4376 -4.0593 0.0432 12 6 0.8728 -4.6469 0.6553 13 1 1.0306 -5.6990 0.4183 14 6 0.7966 -4.3911 2.1629 15 6 2.1699 -4.5746 2.8080 16 7 3.1099 -3.6576 2.1440 17 6 3.8022 -2.7384 2.8456 18 8 4.6312 -2.0439 2.2870 19 6 3.5569 -2.5750 4.2813 20 6 3.5147 -3.5968 5.2455 21 7 3.2722 -3.0624 6.4138 22 7 3.1444 -1.6746 6.2782 23 6 2.8952 -0.6889 7.1850 24 6 2.8181 0.6035 6.7961 25 6 2.9948 0.9488 5.4492 26 6 3.2448 -0.0313 4.5334 27 6 3.3249 -1.3632 4.9606 28 6 3.2657 -3.7801 0.6899 29 6 1.9199 -3.7267 0.0005 30 1 2.0468 -4.0473 -1.0334 31 1 -0.4851 0.8400 0.0004 32 1 -0.5652 -2.0576 0.8789 33 1 -0.5602 -2.1058 -0.9050 34 1 -1.2925 -4.2679 0.6864 35 1 -0.6071 -4.4484 -0.9608 36 1 0.0922 -5.0917 2.6112 37 1 0.4506 -3.3723 2.3375 38 1 2.1126 -4.3379 3.8705 39 1 2.5038 -5.6040 2.6774 40 1 3.6588 -4.6497 5.0530 41 1 2.7577 -0.9428 8.2257 42 1 2.6203 1.3737 7.5269 43 1 2.9336 1.9815 5.1390 44 1 3.3830 0.2172 3.4916 45 1 3.8882 -2.9629 0.3254 46 1 3.7495 -4.7293 0.4593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042271629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:48 Heat of formation + Delta-G solvation = 115.141155 kcal Electronic energy + Delta-G solvation = -31280.344540 eV Core-core repulsion = 27366.143753 eV Total energy + Delta-G solvation = -3914.200787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.08913 -39.71493 -37.88835 -37.10998 -34.84285 -32.91362 -32.76335 -31.14757 -30.80659 -29.60306 -28.38544 -28.12678 -24.69175 -24.24395 -23.88344 -22.82977 -22.42971 -21.84385 -19.95648 -19.64850 -18.30265 -17.49526 -16.73683 -16.50407 -16.28847 -15.85383 -15.55589 -15.19102 -14.81312 -14.65386 -14.46189 -14.09633 -13.89068 -13.56856 -13.41280 -12.85967 -12.68426 -12.47629 -12.19409 -11.93984 -11.93540 -11.88860 -11.50167 -11.33820 -11.16678 -10.87631 -10.84443 -10.76429 -10.65157 -10.38948 -10.11171 -9.81377 -9.77525 -9.61137 -9.47939 -9.39406 -9.22962 -8.50074 -8.02595 -7.52500 -6.72504 -5.61122 -2.92437 0.71612 1.04052 2.16125 2.41166 3.21720 3.40075 3.46009 3.49807 3.53753 3.84673 4.21723 4.57518 4.59000 4.69251 4.82607 5.06945 5.11427 5.19123 5.30679 5.34457 5.41399 5.47265 5.55152 5.61191 5.64038 5.76039 5.80040 5.89375 6.02387 6.06966 6.11523 6.20673 6.25863 6.33299 6.34337 6.37105 6.43817 6.50441 6.58075 6.68112 6.80766 6.82054 7.02340 7.20517 7.47313 7.66683 7.68118 7.93461 8.03747 8.33868 8.83839 9.32409 9.93384 10.58896 11.51258 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009896 B = 0.005892 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.829788 B = 4750.797924 C = 6368.825878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.210 4.210 8 H 0.081 0.919 9 N -0.588 5.588 10 C 0.179 3.821 11 C -0.143 4.143 12 C -0.101 4.101 13 H 0.075 0.925 14 C -0.122 4.122 15 C 0.106 3.894 16 N -0.588 5.588 17 C 0.607 3.393 18 O -0.541 6.541 19 C -0.289 4.289 20 C 0.108 3.892 21 N -0.325 5.325 22 N -0.267 5.267 23 C 0.100 3.900 24 C -0.155 4.155 25 C -0.085 4.085 26 C -0.093 4.093 27 C 0.156 3.844 28 C 0.116 3.884 29 C 0.154 3.846 30 H 0.027 0.973 31 H 0.249 0.751 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.196 0.804 41 H 0.169 0.831 42 H 0.155 0.845 43 H 0.144 0.856 44 H 0.157 0.843 45 H 0.095 0.905 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.674 -6.735 12.585 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.338 4.338 8 H 0.098 0.902 9 N -0.313 5.313 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.121 4.121 13 H 0.093 0.907 14 C -0.160 4.160 15 C -0.017 4.017 16 N -0.320 5.320 17 C 0.395 3.605 18 O -0.418 6.418 19 C -0.304 4.304 20 C -0.070 4.070 21 N -0.147 5.147 22 N -0.032 5.032 23 C -0.026 4.026 24 C -0.177 4.177 25 C -0.108 4.108 26 C -0.113 4.113 27 C 0.036 3.964 28 C -0.007 4.007 29 C 0.045 3.955 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.213 0.787 41 H 0.186 0.814 42 H 0.173 0.827 43 H 0.161 0.839 44 H 0.174 0.826 45 H 0.113 0.887 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.909 -6.499 13.537 15.295 hybrid contribution 0.275 1.059 -0.829 1.372 sum 3.183 -5.440 12.708 14.186 Atomic orbital electron populations 1.69947 1.04727 1.24704 1.58057 1.24684 0.95537 0.97297 1.02934 0.86324 0.78406 0.83694 0.78212 1.21293 1.21920 1.21103 1.19000 0.90539 0.82074 1.42202 0.90167 1.44264 1.01369 0.99262 1.86395 1.21202 0.84359 0.88264 1.00738 1.23161 0.96102 0.99720 0.99171 1.22402 0.97133 0.97724 0.94866 0.90654 1.21817 0.95730 1.03178 0.95260 1.21797 0.89886 0.92655 0.97372 1.47604 1.41790 1.34893 1.07694 1.16735 0.80357 0.79124 0.84305 1.90770 1.34468 1.45411 1.71176 1.19738 1.24352 0.91004 0.95314 1.23944 0.94374 0.99824 0.88906 1.77475 1.31010 0.83723 1.22468 1.45941 1.44353 1.06601 1.06283 1.21459 1.00181 0.85936 0.94979 1.20893 1.04653 0.94620 0.97531 1.21278 0.96642 1.00548 0.92325 1.20907 0.99128 0.88810 1.02428 1.19231 0.98422 0.94851 0.83934 1.21380 0.98808 1.01486 0.79059 1.20714 0.91195 0.87802 0.95756 0.95616 0.94079 0.93832 0.94130 0.92424 0.92782 0.92276 0.90252 0.90139 0.91870 0.78693 0.81416 0.82703 0.83865 0.82551 0.88699 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.18 10.38 55.49 0.58 -26.60 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.90 22.75 29.55 -169.99 -5.02 17.72 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.21 -5.81 9.70 -15.06 -0.15 -5.95 16 8 H 0.08 2.28 6.51 -52.49 -0.34 1.94 16 9 N -0.59 -14.49 3.20 -164.40 -0.53 -15.02 16 10 C 0.18 4.27 4.62 -2.74 -0.01 4.26 16 11 C -0.14 -2.61 6.33 -24.28 -0.15 -2.76 16 12 C -0.10 -1.69 3.68 -88.37 -0.33 -2.01 16 13 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 14 C -0.12 -1.95 5.04 -26.76 -0.13 -2.08 16 15 C 0.11 1.54 5.98 -3.77 -0.02 1.52 16 16 N -0.59 -10.68 2.97 -175.65 -0.52 -11.20 16 17 C 0.61 12.26 7.55 -12.90 -0.10 12.16 16 18 O -0.54 -12.83 16.58 5.17 0.09 -12.74 16 19 C -0.29 -5.15 5.24 -104.68 -0.55 -5.70 16 20 C 0.11 1.57 9.59 -17.15 -0.16 1.40 16 21 N -0.32 -4.89 12.57 30.75 0.39 -4.50 16 22 N -0.27 -4.02 3.86 -10.54 -0.04 -4.06 16 23 C 0.10 1.12 11.17 -16.68 -0.19 0.93 16 24 C -0.16 -1.55 9.98 -39.94 -0.40 -1.94 16 25 C -0.08 -1.08 10.09 -39.51 -0.40 -1.48 16 26 C -0.09 -1.58 10.07 -39.53 -0.40 -1.98 16 27 C 0.16 2.73 6.79 -84.06 -0.57 2.16 16 28 C 0.12 2.19 5.67 -4.76 -0.03 2.16 16 29 C 0.15 3.07 2.97 -68.28 -0.20 2.87 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.04 1.16 7.04 -51.93 -0.37 0.80 16 33 H 0.04 1.09 7.56 -51.93 -0.39 0.69 16 34 H 0.06 0.96 7.97 -51.93 -0.41 0.54 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.61 6.85 -51.93 -0.36 1.25 16 38 H 0.08 1.11 4.44 -51.93 -0.23 0.88 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.20 2.09 7.53 -52.48 -0.40 1.69 16 41 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.14 1.50 8.06 -52.48 -0.42 1.07 16 44 H 0.16 3.07 8.06 -52.49 -0.42 2.64 16 45 H 0.09 2.09 5.56 -51.93 -0.29 1.80 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 363.25 15.07 5.47 5.47 Total: -1.00 -34.64 363.25 -9.62 -44.26 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.15 Total: 3.47 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -3.88 Total: 3.20 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.13 Total: -61.38 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.64 -9.62 -44.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042271629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.399 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds