Wall clock time and date at job start Sat Apr 11 2020 06:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99752 * 2 1 4 4 H 1.48503 * 109.47206 * 240.00270 * 3 2 1 5 5 H 1.48502 * 109.47033 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47111 * 120.00355 * 3 2 1 7 7 C 1.38808 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00229 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99865 * 0.02562 * 7 2 1 10 10 C 1.47437 * 126.05871 * 359.96771 * 9 7 2 11 11 C 1.54499 * 107.14624 * 181.65112 * 10 9 7 12 12 C 1.56113 * 102.62385 * 22.83617 * 11 10 9 13 13 H 1.08997 * 113.55099 * 202.61622 * 12 11 10 14 14 C 1.53102 * 106.34633 * 78.37082 * 12 11 10 15 15 C 1.52838 * 110.53795 * 195.42324 * 14 12 11 16 16 N 1.47152 * 107.97958 * 57.36981 * 15 14 12 17 17 C 1.34776 * 121.21380 * 122.69628 * 16 15 14 18 18 O 1.21719 * 120.00228 * 175.69702 * 17 16 15 19 19 C 1.46564 * 120.00001 * 355.70003 * 17 16 15 20 20 C 1.40551 * 126.58551 * 49.45074 * 19 17 16 21 21 N 1.30733 * 108.75112 * 179.97438 * 20 19 17 22 22 N 1.40022 * 109.60442 * 359.97438 * 21 20 19 23 23 C 1.36236 * 132.01563 * 180.02562 * 22 21 20 24 24 C 1.35188 * 120.70711 * 179.97438 * 23 22 21 25 25 C 1.40163 * 120.31686 * 359.97438 * 24 23 22 26 26 C 1.36444 * 119.41156 * 0.02874 * 25 24 23 27 27 C 1.36585 * 107.90079 * 359.76737 * 22 21 20 28 28 C 1.46757 * 117.57127 * 302.71399 * 16 15 14 29 29 C 1.46459 * 126.06096 * 179.97438 * 9 7 2 30 30 H 1.08996 * 108.42763 * 269.21515 * 29 9 7 31 31 H 0.96999 * 120.00547 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.90203 * 301.03466 * 10 9 7 33 33 H 1.08998 * 109.89615 * 62.09165 * 10 9 7 34 34 H 1.08999 * 110.78106 * 141.13166 * 11 10 9 35 35 H 1.09002 * 110.77861 * 264.37361 * 11 10 9 36 36 H 1.08994 * 109.25641 * 75.15856 * 14 12 11 37 37 H 1.08998 * 109.25197 * 315.68432 * 14 12 11 38 38 H 1.09003 * 109.75895 * 176.99285 * 15 14 12 39 39 H 1.09003 * 109.76121 * 297.69699 * 15 14 12 40 40 H 1.08003 * 125.62140 * 359.97438 * 20 19 17 41 41 H 1.07999 * 119.64422 * 359.97438 * 23 22 21 42 42 H 1.07999 * 119.83852 * 180.02562 * 24 23 22 43 43 H 1.08005 * 120.29081 * 180.02562 * 25 24 23 44 44 H 1.07997 * 120.37234 * 179.97438 * 26 25 24 45 45 H 1.09001 * 109.22648 * 172.83659 * 28 16 15 46 46 H 1.09000 * 109.23320 * 292.19532 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1405 -2.5438 0.0007 11 6 -0.4376 -4.0593 0.0432 12 6 0.8728 -4.6469 0.6553 13 1 1.0306 -5.6990 0.4183 14 6 0.7966 -4.3911 2.1629 15 6 2.1699 -4.5746 2.8080 16 7 3.1099 -3.6576 2.1440 17 6 3.8022 -2.7384 2.8456 18 8 4.6312 -2.0439 2.2870 19 6 3.5569 -2.5750 4.2813 20 6 3.5147 -3.5968 5.2455 21 7 3.2722 -3.0624 6.4138 22 7 3.1444 -1.6746 6.2782 23 6 2.8952 -0.6889 7.1850 24 6 2.8181 0.6035 6.7961 25 6 2.9948 0.9488 5.4492 26 6 3.2448 -0.0313 4.5334 27 6 3.3249 -1.3632 4.9606 28 6 3.2657 -3.7801 0.6899 29 6 1.9199 -3.7267 0.0005 30 1 2.0468 -4.0473 -1.0334 31 1 -0.4851 0.8400 0.0004 32 1 -0.5652 -2.0576 0.8789 33 1 -0.5602 -2.1058 -0.9050 34 1 -1.2925 -4.2679 0.6864 35 1 -0.6071 -4.4484 -0.9608 36 1 0.0922 -5.0917 2.6112 37 1 0.4506 -3.3723 2.3375 38 1 2.1126 -4.3379 3.8705 39 1 2.5038 -5.6040 2.6774 40 1 3.6588 -4.6497 5.0530 41 1 2.7577 -0.9428 8.2257 42 1 2.6203 1.3737 7.5269 43 1 2.9336 1.9815 5.1390 44 1 3.3830 0.2172 3.4916 45 1 3.8882 -2.9629 0.3254 46 1 3.7495 -4.7293 0.4593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042271629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:47 Heat of formation + Delta-G solvation = 92.053768 kcal Electronic energy + Delta-G solvation = -31281.345684 eV Core-core repulsion = 27366.143753 eV Total energy + Delta-G solvation = -3915.201931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.21087 -41.19271 -39.42877 -38.22815 -36.45577 -34.63163 -34.05757 -32.81426 -31.88035 -31.12785 -30.05359 -29.47295 -26.51011 -25.84109 -24.95314 -24.09668 -23.80679 -23.04352 -21.72941 -21.06937 -19.77902 -18.74483 -18.43164 -17.81514 -17.47547 -17.14998 -16.80407 -16.72378 -16.34692 -16.09468 -15.89181 -15.67110 -15.48043 -15.13533 -14.58044 -14.39334 -14.10364 -13.95024 -13.67308 -13.23768 -13.23362 -13.13575 -13.06118 -12.88443 -12.82358 -12.64304 -12.51648 -12.32774 -12.07287 -12.02756 -11.64945 -11.58735 -11.39530 -11.26537 -11.12531 -10.74304 -10.66158 -10.45496 -9.47309 -8.79056 -8.67473 -7.82094 -5.11983 -0.37176 -0.02895 1.11986 1.21964 1.34510 1.37007 1.45003 1.86850 2.24721 2.48094 2.52223 3.15059 3.35716 3.50528 3.55726 3.79773 3.85197 3.89733 3.95608 3.99228 4.05228 4.13961 4.27782 4.35508 4.46012 4.51742 4.52976 4.62259 4.66871 4.70751 4.75925 4.89665 4.91671 4.98257 5.03384 5.15147 5.17628 5.19142 5.23705 5.31818 5.37608 5.53384 5.66347 5.73109 5.74618 5.77930 5.82400 6.24593 6.36704 6.62573 7.16286 7.36734 7.84873 8.48466 9.28420 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009896 B = 0.005892 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.829788 B = 4750.797924 C = 6368.825878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.951 3.049 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.202 4.202 8 H 0.063 0.937 9 N -0.604 5.604 10 C 0.187 3.813 11 C -0.129 4.129 12 C -0.083 4.083 13 H 0.127 0.873 14 C -0.118 4.118 15 C 0.105 3.895 16 N -0.589 5.589 17 C 0.599 3.401 18 O -0.597 6.597 19 C -0.333 4.333 20 C 0.128 3.872 21 N -0.331 5.331 22 N -0.270 5.270 23 C 0.103 3.897 24 C -0.145 4.145 25 C -0.058 4.058 26 C -0.153 4.153 27 C 0.138 3.862 28 C 0.119 3.881 29 C 0.141 3.859 30 H 0.030 0.970 31 H 0.242 0.758 32 H 0.003 0.997 33 H -0.001 1.001 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.025 0.975 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.233 0.767 41 H 0.213 0.787 42 H 0.210 0.790 43 H 0.165 0.835 44 H 0.108 0.892 45 H 0.050 0.950 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.218 -9.330 15.770 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.256 4.256 3 Si 0.781 3.219 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.332 4.332 8 H 0.081 0.919 9 N -0.329 5.329 10 C 0.062 3.938 11 C -0.167 4.167 12 C -0.102 4.102 13 H 0.145 0.855 14 C -0.156 4.156 15 C -0.017 4.017 16 N -0.319 5.319 17 C 0.389 3.611 18 O -0.479 6.479 19 C -0.348 4.348 20 C -0.051 4.051 21 N -0.153 5.153 22 N -0.034 5.034 23 C -0.022 4.022 24 C -0.165 4.165 25 C -0.081 4.081 26 C -0.173 4.173 27 C 0.017 3.983 28 C -0.005 4.005 29 C 0.034 3.966 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.021 0.979 33 H 0.017 0.983 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.044 0.956 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.249 0.751 41 H 0.230 0.770 42 H 0.227 0.773 43 H 0.182 0.818 44 H 0.127 0.873 45 H 0.069 0.931 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.440 -9.153 16.735 19.230 hybrid contribution 0.425 1.954 -1.736 2.648 sum 2.864 -7.199 14.999 16.882 Atomic orbital electron populations 1.70143 1.05572 1.24513 1.59736 1.25298 0.96338 0.99887 1.04077 0.85545 0.77438 0.80951 0.77957 1.21156 1.21331 1.21196 1.19022 0.89994 0.83822 1.40381 0.91893 1.44450 1.02093 1.00390 1.86002 1.20946 0.83643 0.92353 0.96809 1.23025 0.97941 0.94809 1.00950 1.22463 0.93857 0.99227 0.94699 0.85529 1.21781 0.97444 1.01081 0.95291 1.22116 0.88171 0.94026 0.97373 1.47754 1.41832 1.34973 1.07353 1.17218 0.79807 0.78551 0.85529 1.90716 1.37098 1.47521 1.72580 1.19670 1.27956 0.92656 0.94532 1.24393 0.92471 1.00737 0.87528 1.77415 1.31571 0.83730 1.22535 1.46242 1.44162 1.07255 1.05774 1.22493 0.97784 0.85637 0.96305 1.21489 1.02753 0.95579 0.96704 1.21723 0.92606 1.00567 0.93211 1.20666 1.04809 0.90520 1.01312 1.19328 0.98602 0.94878 0.85443 1.21285 0.97645 1.01832 0.79727 1.21040 0.92813 0.86151 0.96585 0.95275 0.94879 0.97876 0.98303 0.90265 0.91182 0.88269 0.95586 0.89336 0.87033 0.75088 0.77006 0.77340 0.81784 0.87339 0.93142 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.48 10.38 21.65 0.22 -59.26 16 2 C -0.06 -3.86 5.49 84.86 0.47 -3.40 16 3 Si 0.95 49.95 29.55 68.60 2.03 51.98 16 4 H -0.28 -14.74 7.11 99.48 0.71 -14.04 16 5 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 6 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 7 C -0.20 -12.02 9.70 84.03 0.81 -11.21 16 8 H 0.06 3.91 6.51 -2.91 -0.02 3.89 16 9 N -0.60 -31.31 3.20 -674.05 -2.15 -33.47 16 10 C 0.19 9.37 4.62 86.71 0.40 9.77 16 11 C -0.13 -4.48 6.33 32.18 0.20 -4.28 16 12 C -0.08 -2.50 3.68 -9.34 -0.03 -2.53 16 13 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 14 C -0.12 -3.46 5.04 30.57 0.15 -3.30 16 15 C 0.10 2.74 5.98 86.20 0.52 3.25 16 16 N -0.59 -21.43 2.97 -827.86 -2.46 -23.89 16 17 C 0.60 25.59 7.55 86.41 0.65 26.24 16 18 O -0.60 -31.01 16.58 -4.41 -0.07 -31.09 16 19 C -0.33 -12.26 5.24 -19.90 -0.10 -12.37 16 20 C 0.13 3.51 9.59 85.42 0.82 4.33 16 21 N -0.33 -9.30 12.57 -56.62 -0.71 -10.01 16 22 N -0.27 -7.77 3.86 -187.27 -0.72 -8.49 16 23 C 0.10 1.94 11.17 83.31 0.93 2.88 16 24 C -0.14 -2.36 9.98 22.03 0.22 -2.14 16 25 C -0.06 -1.44 10.09 22.32 0.23 -1.22 16 26 C -0.15 -5.61 10.07 22.30 0.22 -5.39 16 27 C 0.14 5.03 6.79 39.49 0.27 5.30 16 28 C 0.12 4.50 5.67 85.77 0.49 4.99 16 29 C 0.14 5.59 2.97 44.78 0.13 5.72 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.24 14.88 8.31 -92.71 -0.77 14.11 16 32 H 0.00 0.17 7.04 -2.39 -0.02 0.15 16 33 H 0.00 -0.07 7.56 -2.39 -0.02 -0.09 16 34 H 0.08 2.44 7.97 -2.39 -0.02 2.42 16 35 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.03 1.04 6.85 -2.39 -0.02 1.03 16 38 H 0.09 2.21 4.44 -2.39 -0.01 2.20 16 39 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.23 4.19 7.53 -2.91 -0.02 4.17 16 41 H 0.21 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.21 1.19 8.06 -2.91 -0.02 1.17 16 43 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 44 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 45 H 0.05 2.37 5.56 -2.39 -0.01 2.36 16 46 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -88.78 363.25 3.51 -85.27 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 1.00 Total: 12.31 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 6.38 Total: 16.65 kcal Atomic # 7 Polarization: -129.30 SS G_CDS: -5.82 Total: -135.12 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.07 Total: -31.09 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.03 Total: 51.98 kcal Total: -88.78 3.51 -85.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042271629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.322 kcal (2) G-P(sol) polarization free energy of solvation -88.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds