Wall clock time and date at job start Sat Apr 11 2020 06:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 119.99783 * 2 1 4 4 H 1.48504 * 109.47215 * 269.99562 * 3 2 1 5 5 H 1.48497 * 109.47669 * 29.99967 * 3 2 1 6 6 H 1.48499 * 109.47163 * 149.99937 * 3 2 1 7 7 C 1.38809 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99733 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00169 * 359.97438 * 7 2 1 10 10 C 1.48151 * 126.39720 * 0.04322 * 9 7 2 11 11 C 1.55301 * 107.04359 * 174.95891 * 10 9 7 12 12 C 1.53704 * 101.81157 * 337.55814 * 11 10 9 13 13 H 1.09002 * 111.69520 * 281.15681 * 12 11 10 14 14 C 1.51976 * 115.00465 * 153.46660 * 12 11 10 15 15 C 1.53892 * 107.28874 * 184.55345 * 14 12 11 16 16 N 1.46588 * 110.70868 * 51.81638 * 15 14 12 17 17 C 1.34775 * 119.75738 * 132.25211 * 16 15 14 18 18 O 1.21723 * 120.00392 * 185.65312 * 17 16 15 19 19 C 1.46566 * 119.99601 * 5.65653 * 17 16 15 20 20 C 1.40556 * 126.58490 * 39.38766 * 19 17 16 21 21 N 1.30740 * 108.74549 * 179.97438 * 20 19 17 22 22 N 1.40015 * 109.60448 * 359.97438 * 21 20 19 23 23 C 1.36242 * 132.00975 * 179.97438 * 22 21 20 24 24 C 1.35192 * 120.70609 * 179.97438 * 23 22 21 25 25 C 1.40159 * 120.31559 * 0.27827 * 24 23 22 26 26 C 1.36450 * 119.40967 * 359.46102 * 25 24 23 27 27 C 1.36572 * 107.90980 * 359.97438 * 22 21 20 28 28 C 1.47801 * 120.49234 * 312.52314 * 16 15 14 29 29 C 1.45501 * 126.39638 * 179.97438 * 9 7 2 30 30 H 1.09008 * 109.56789 * 93.41663 * 29 9 7 31 31 H 0.96998 * 119.99588 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.92329 * 294.31031 * 10 9 7 33 33 H 1.09004 * 109.91948 * 55.41835 * 10 9 7 34 34 H 1.08994 * 110.96494 * 219.42923 * 11 10 9 35 35 H 1.08999 * 110.96216 * 95.68592 * 11 10 9 36 36 H 1.09003 * 109.89565 * 65.10915 * 14 12 11 37 37 H 1.09000 * 109.95770 * 304.03569 * 14 12 11 38 38 H 1.08997 * 109.23122 * 291.49506 * 15 14 12 39 39 H 1.09006 * 109.19277 * 172.11024 * 15 14 12 40 40 H 1.08000 * 125.62215 * 359.97438 * 20 19 17 41 41 H 1.07999 * 119.64459 * 0.02562 * 23 22 21 42 42 H 1.07995 * 119.84086 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.28923 * 179.72197 * 25 24 23 44 44 H 1.08003 * 120.36779 * 180.22630 * 26 25 24 45 45 H 1.09004 * 110.06504 * 170.20474 * 28 16 15 46 46 H 1.09002 * 110.06425 * 291.76894 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1467 -2.5531 0.0014 11 6 -0.4343 -4.0738 -0.1276 12 6 0.8685 -4.5877 -0.7610 13 1 0.9003 -4.3912 -1.8327 14 6 1.1977 -6.0413 -0.4635 15 6 2.5778 -6.3329 -1.0788 16 7 3.5605 -5.3361 -0.6435 17 6 4.7634 -5.7375 -0.1872 18 8 5.5433 -4.9231 0.2711 19 6 5.1325 -7.1549 -0.2431 20 6 4.8514 -8.0533 -1.2869 21 7 5.3399 -9.2253 -0.9754 22 7 5.9618 -9.1573 0.2772 23 6 6.6077 -10.0940 1.0266 24 6 7.1339 -9.7727 2.2298 25 6 7.0166 -8.4677 2.7275 26 6 6.3762 -7.5212 1.9819 27 6 5.8389 -7.8776 0.7382 28 6 3.2397 -3.8942 -0.6956 29 6 1.9082 -3.7214 0.0017 30 1 1.9990 -4.0800 1.0271 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5631 -2.1743 0.9348 33 1 -0.5803 -2.0173 -0.8431 34 1 -1.2851 -4.2555 -0.7840 35 1 -0.5959 -4.5245 0.8516 36 1 0.4466 -6.6912 -0.9127 37 1 1.2305 -6.2023 0.6140 38 1 2.4987 -6.3083 -2.1657 39 1 2.9079 -7.3233 -0.7653 40 1 4.3196 -7.8146 -2.1961 41 1 6.7012 -11.1037 0.6551 42 1 7.6427 -10.5263 2.8123 43 1 7.4332 -8.2126 3.6907 44 1 6.2801 -6.5100 2.3489 45 1 4.0090 -3.3210 -0.1781 46 1 3.1608 -3.5659 -1.7320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042271630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:52 Heat of formation + Delta-G solvation = 113.477410 kcal Electronic energy + Delta-G solvation = -29792.608758 eV Core-core repulsion = 25878.335825 eV Total energy + Delta-G solvation = -3914.272933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.41763 -39.93216 -38.09685 -37.43873 -35.26756 -33.25036 -32.82683 -31.24519 -31.10754 -29.99135 -28.70320 -28.13148 -24.76951 -24.31085 -24.18245 -22.97882 -22.28737 -21.92555 -20.11853 -19.73753 -19.05863 -17.76658 -17.00979 -16.69134 -16.42607 -16.19823 -15.79282 -15.42521 -15.00660 -14.84828 -14.56441 -14.28144 -14.00570 -13.73750 -13.38582 -13.23032 -12.91361 -12.64310 -12.52801 -12.28836 -12.22972 -12.04750 -11.82223 -11.46987 -11.25625 -11.13332 -10.90918 -10.77540 -10.71914 -10.67998 -10.11316 -9.91805 -9.84975 -9.69341 -9.66239 -9.56634 -9.41323 -8.58725 -8.34221 -7.86846 -6.80990 -5.67894 -3.01325 0.36364 0.71183 1.86050 2.07529 2.90022 3.13344 3.44601 3.48126 3.50343 3.52687 3.91906 4.25546 4.37245 4.51474 4.55061 4.75196 4.87853 4.96871 5.07300 5.10510 5.11440 5.22357 5.31296 5.44890 5.57049 5.66202 5.67891 5.74455 5.82933 5.86289 5.98659 6.01587 6.06478 6.10643 6.15797 6.20465 6.23688 6.45320 6.49217 6.56245 6.61814 6.79478 6.83779 7.12011 7.17832 7.59568 7.63766 7.71508 7.85491 8.27468 8.48149 9.23415 9.86375 10.53304 11.44512 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017386 B = 0.002958 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.106654 B = 9462.608170 C =10354.331096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.226 4.226 8 H 0.080 0.920 9 N -0.592 5.592 10 C 0.177 3.823 11 C -0.137 4.137 12 C -0.112 4.112 13 H 0.077 0.923 14 C -0.119 4.119 15 C 0.106 3.894 16 N -0.601 5.601 17 C 0.594 3.406 18 O -0.545 6.545 19 C -0.298 4.298 20 C 0.117 3.883 21 N -0.321 5.321 22 N -0.268 5.268 23 C 0.108 3.892 24 C -0.160 4.160 25 C -0.079 4.079 26 C -0.104 4.104 27 C 0.154 3.846 28 C 0.118 3.882 29 C 0.156 3.844 30 H 0.023 0.977 31 H 0.252 0.748 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.200 0.800 41 H 0.171 0.829 42 H 0.157 0.843 43 H 0.145 0.855 44 H 0.156 0.844 45 H 0.093 0.907 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.195 -23.219 1.563 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.098 0.902 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.132 4.132 13 H 0.096 0.904 14 C -0.158 4.158 15 C -0.018 4.018 16 N -0.333 5.333 17 C 0.382 3.618 18 O -0.424 6.424 19 C -0.313 4.313 20 C -0.063 4.063 21 N -0.142 5.142 22 N -0.032 5.032 23 C -0.018 4.018 24 C -0.181 4.181 25 C -0.102 4.102 26 C -0.123 4.123 27 C 0.034 3.966 28 C -0.004 4.004 29 C 0.047 3.953 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.216 0.784 41 H 0.188 0.812 42 H 0.175 0.825 43 H 0.163 0.837 44 H 0.173 0.827 45 H 0.111 0.889 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.616 -23.734 1.276 25.640 hybrid contribution 0.218 1.633 0.179 1.657 sum 9.835 -22.102 1.455 24.235 Atomic orbital electron populations 1.69951 1.04883 1.24998 1.57181 1.24779 0.95677 0.97624 1.02260 0.86144 0.78725 0.83537 0.77582 1.21610 1.21748 1.20575 1.19060 0.90465 0.82273 1.43629 0.90234 1.44172 1.01649 0.99201 1.86679 1.21541 0.83705 0.88484 1.00973 1.22712 0.95994 0.99635 0.99216 1.22254 0.97358 0.93405 1.00146 0.90434 1.21802 0.95322 0.97429 1.01222 1.21881 0.89302 0.91761 0.98824 1.48060 1.13568 1.07711 1.64009 1.16968 0.81457 0.85958 0.77370 1.90794 1.50886 1.54423 1.46263 1.19774 1.16645 0.96400 0.98458 1.24131 0.94681 0.88840 0.98629 1.77572 1.20121 1.22404 0.94116 1.46026 1.35612 1.07608 1.13971 1.21555 0.94579 0.94337 0.91363 1.20925 1.03461 0.98394 0.95348 1.21311 0.96515 0.92230 1.00127 1.20819 0.98137 1.01971 0.91400 1.19283 0.97259 0.84963 0.95121 1.21630 0.99112 0.78272 1.01407 1.20878 0.91122 0.87555 0.95709 0.95985 0.93815 0.94520 0.92597 0.92265 0.92606 0.90953 0.91544 0.91777 0.90111 0.78376 0.81196 0.82533 0.83686 0.82665 0.88899 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.19 10.43 55.49 0.58 -26.61 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.23 -6.31 9.88 -15.06 -0.15 -6.46 16 8 H 0.08 2.18 7.41 -52.49 -0.39 1.79 16 9 N -0.59 -15.05 3.35 -163.20 -0.55 -15.59 16 10 C 0.18 4.28 5.46 -1.91 -0.01 4.27 16 11 C -0.14 -2.52 6.54 -25.15 -0.16 -2.68 16 12 C -0.11 -1.91 2.62 -89.53 -0.23 -2.15 16 13 H 0.08 1.35 8.13 -51.93 -0.42 0.93 16 14 C -0.12 -1.59 5.72 -26.79 -0.15 -1.74 16 15 C 0.11 1.32 5.13 -3.53 -0.02 1.30 16 16 N -0.60 -9.68 3.02 -174.60 -0.53 -10.21 16 17 C 0.59 10.12 7.53 -12.90 -0.10 10.02 16 18 O -0.55 -11.20 16.44 5.17 0.08 -11.11 16 19 C -0.30 -4.22 5.18 -104.67 -0.54 -4.76 16 20 C 0.12 1.37 9.56 -17.14 -0.16 1.21 16 21 N -0.32 -3.92 12.57 30.75 0.39 -3.53 16 22 N -0.27 -3.05 3.86 -10.54 -0.04 -3.09 16 23 C 0.11 0.81 11.17 -16.68 -0.19 0.62 16 24 C -0.16 -0.92 9.98 -39.95 -0.40 -1.32 16 25 C -0.08 -0.57 10.09 -39.51 -0.40 -0.97 16 26 C -0.10 -1.14 10.07 -39.53 -0.40 -1.54 16 27 C 0.15 2.00 6.77 -84.07 -0.57 1.43 16 28 C 0.12 2.29 5.67 -4.19 -0.02 2.26 16 29 C 0.16 3.26 2.74 -68.08 -0.19 3.07 16 30 H 0.02 0.51 7.93 -51.92 -0.41 0.10 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.04 0.98 7.77 -51.93 -0.40 0.57 16 33 H 0.06 1.49 7.19 -51.93 -0.37 1.11 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.94 7.99 -51.93 -0.41 0.52 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.90 4.96 -51.93 -0.26 0.64 16 40 H 0.20 1.75 7.27 -52.49 -0.38 1.37 16 41 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.16 0.34 8.06 -52.49 -0.42 -0.09 16 43 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.16 1.83 8.04 -52.48 -0.42 1.41 16 45 H 0.09 2.03 6.73 -51.93 -0.35 1.68 16 46 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -35.04 366.74 -9.69 -44.73 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.34 Total: 0.17 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -3.79 Total: 2.25 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.15 Total: -59.04 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.11 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.04 -9.69 -44.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042271630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.205 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds