Wall clock time and date at job start Sat Apr 11 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 119.99783 * 2 1 4 4 H 1.48504 * 109.47215 * 269.99562 * 3 2 1 5 5 H 1.48497 * 109.47669 * 29.99967 * 3 2 1 6 6 H 1.48499 * 109.47163 * 149.99937 * 3 2 1 7 7 C 1.38809 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99733 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00169 * 359.97438 * 7 2 1 10 10 C 1.48151 * 126.39720 * 0.04322 * 9 7 2 11 11 C 1.55301 * 107.04359 * 174.95891 * 10 9 7 12 12 C 1.53704 * 101.81157 * 337.55814 * 11 10 9 13 13 H 1.09002 * 111.69520 * 281.15681 * 12 11 10 14 14 C 1.51976 * 115.00465 * 153.46660 * 12 11 10 15 15 C 1.53892 * 107.28874 * 184.55345 * 14 12 11 16 16 N 1.46588 * 110.70868 * 51.81638 * 15 14 12 17 17 C 1.34775 * 119.75738 * 132.25211 * 16 15 14 18 18 O 1.21723 * 120.00392 * 185.65312 * 17 16 15 19 19 C 1.46566 * 119.99601 * 5.65653 * 17 16 15 20 20 C 1.40556 * 126.58490 * 39.38766 * 19 17 16 21 21 N 1.30740 * 108.74549 * 179.97438 * 20 19 17 22 22 N 1.40015 * 109.60448 * 359.97438 * 21 20 19 23 23 C 1.36242 * 132.00975 * 179.97438 * 22 21 20 24 24 C 1.35192 * 120.70609 * 179.97438 * 23 22 21 25 25 C 1.40159 * 120.31559 * 0.27827 * 24 23 22 26 26 C 1.36450 * 119.40967 * 359.46102 * 25 24 23 27 27 C 1.36572 * 107.90980 * 359.97438 * 22 21 20 28 28 C 1.47801 * 120.49234 * 312.52314 * 16 15 14 29 29 C 1.45501 * 126.39638 * 179.97438 * 9 7 2 30 30 H 1.09008 * 109.56789 * 93.41663 * 29 9 7 31 31 H 0.96998 * 119.99588 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.92329 * 294.31031 * 10 9 7 33 33 H 1.09004 * 109.91948 * 55.41835 * 10 9 7 34 34 H 1.08994 * 110.96494 * 219.42923 * 11 10 9 35 35 H 1.08999 * 110.96216 * 95.68592 * 11 10 9 36 36 H 1.09003 * 109.89565 * 65.10915 * 14 12 11 37 37 H 1.09000 * 109.95770 * 304.03569 * 14 12 11 38 38 H 1.08997 * 109.23122 * 291.49506 * 15 14 12 39 39 H 1.09006 * 109.19277 * 172.11024 * 15 14 12 40 40 H 1.08000 * 125.62215 * 359.97438 * 20 19 17 41 41 H 1.07999 * 119.64459 * 0.02562 * 23 22 21 42 42 H 1.07995 * 119.84086 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.28923 * 179.72197 * 25 24 23 44 44 H 1.08003 * 120.36779 * 180.22630 * 26 25 24 45 45 H 1.09004 * 110.06504 * 170.20474 * 28 16 15 46 46 H 1.09002 * 110.06425 * 291.76894 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1467 -2.5531 0.0014 11 6 -0.4343 -4.0738 -0.1276 12 6 0.8685 -4.5877 -0.7610 13 1 0.9003 -4.3912 -1.8327 14 6 1.1977 -6.0413 -0.4635 15 6 2.5778 -6.3329 -1.0788 16 7 3.5605 -5.3361 -0.6435 17 6 4.7634 -5.7375 -0.1872 18 8 5.5433 -4.9231 0.2711 19 6 5.1325 -7.1549 -0.2431 20 6 4.8514 -8.0533 -1.2869 21 7 5.3399 -9.2253 -0.9754 22 7 5.9618 -9.1573 0.2772 23 6 6.6077 -10.0940 1.0266 24 6 7.1339 -9.7727 2.2298 25 6 7.0166 -8.4677 2.7275 26 6 6.3762 -7.5212 1.9819 27 6 5.8389 -7.8776 0.7382 28 6 3.2397 -3.8942 -0.6956 29 6 1.9082 -3.7214 0.0017 30 1 1.9990 -4.0800 1.0271 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5631 -2.1743 0.9348 33 1 -0.5803 -2.0173 -0.8431 34 1 -1.2851 -4.2555 -0.7840 35 1 -0.5959 -4.5245 0.8516 36 1 0.4466 -6.6912 -0.9127 37 1 1.2305 -6.2023 0.6140 38 1 2.4987 -6.3083 -2.1657 39 1 2.9079 -7.3233 -0.7653 40 1 4.3196 -7.8146 -2.1961 41 1 6.7012 -11.1037 0.6551 42 1 7.6427 -10.5263 2.8123 43 1 7.4332 -8.2126 3.6907 44 1 6.2801 -6.5100 2.3489 45 1 4.0090 -3.3210 -0.1781 46 1 3.1608 -3.5659 -1.7320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042271630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:51 Heat of formation + Delta-G solvation = 90.694008 kcal Electronic energy + Delta-G solvation = -29793.596720 eV Core-core repulsion = 25878.335825 eV Total energy + Delta-G solvation = -3915.260895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.23220 -41.29543 -39.54675 -38.23066 -36.79087 -34.65487 -34.03705 -32.88525 -31.87269 -31.35618 -30.26979 -29.34827 -26.55485 -25.75609 -24.90161 -23.93793 -23.59639 -22.96165 -21.80078 -21.27487 -20.26313 -18.86715 -18.45080 -17.75604 -17.44942 -17.15068 -16.94080 -16.58203 -16.44681 -16.11344 -15.74323 -15.66213 -15.62977 -15.06364 -14.78031 -14.37964 -14.36052 -13.89465 -13.77204 -13.54548 -13.16675 -13.13770 -13.06936 -12.97587 -12.86845 -12.72129 -12.48201 -12.12928 -12.00594 -11.99604 -11.75661 -11.59432 -11.53248 -11.31952 -11.01546 -10.89524 -10.72862 -10.46003 -9.67993 -8.90877 -8.70648 -7.86511 -5.21369 -0.34730 -0.00963 1.10684 1.13753 1.43438 1.44807 1.53959 1.85063 2.12559 2.44842 2.49682 3.14198 3.31527 3.48529 3.52111 3.76010 3.85596 3.86885 3.94632 3.99443 4.00658 4.10467 4.25365 4.29007 4.32425 4.41075 4.50167 4.54138 4.63284 4.69857 4.75900 4.85383 4.90746 4.93269 5.03933 5.11106 5.15564 5.19663 5.23058 5.27896 5.39450 5.41482 5.51515 5.63003 5.66397 5.76861 5.78692 6.19265 6.35813 6.47049 7.08194 7.20249 7.76331 8.43502 9.24510 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017386 B = 0.002958 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.106654 B = 9462.608170 C =10354.331096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.062 4.062 3 Si 0.972 3.028 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.237 4.237 8 H 0.074 0.926 9 N -0.613 5.613 10 C 0.181 3.819 11 C -0.121 4.121 12 C -0.094 4.094 13 H 0.081 0.919 14 C -0.110 4.110 15 C 0.102 3.898 16 N -0.599 5.599 17 C 0.593 3.407 18 O -0.598 6.598 19 C -0.340 4.340 20 C 0.129 3.871 21 N -0.336 5.336 22 N -0.270 5.270 23 C 0.099 3.901 24 C -0.144 4.144 25 C -0.047 4.047 26 C -0.151 4.151 27 C 0.144 3.856 28 C 0.131 3.869 29 C 0.149 3.851 30 H 0.002 0.998 31 H 0.247 0.753 32 H -0.002 1.002 33 H 0.025 0.975 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.225 0.775 41 H 0.205 0.795 42 H 0.207 0.793 43 H 0.177 0.823 44 H 0.132 0.868 45 H 0.055 0.945 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.168 -27.642 1.451 29.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.255 4.255 3 Si 0.801 3.199 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.366 4.366 8 H 0.092 0.908 9 N -0.338 5.338 10 C 0.056 3.944 11 C -0.159 4.159 12 C -0.114 4.114 13 H 0.099 0.901 14 C -0.148 4.148 15 C -0.019 4.019 16 N -0.331 5.331 17 C 0.384 3.616 18 O -0.480 6.480 19 C -0.355 4.355 20 C -0.050 4.050 21 N -0.157 5.157 22 N -0.034 5.034 23 C -0.026 4.026 24 C -0.164 4.164 25 C -0.071 4.071 26 C -0.171 4.171 27 C 0.023 3.977 28 C 0.008 3.992 29 C 0.041 3.959 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.016 0.984 33 H 0.043 0.957 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.132 0.868 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.241 0.759 41 H 0.222 0.778 42 H 0.224 0.776 43 H 0.195 0.805 44 H 0.149 0.851 45 H 0.074 0.926 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.583 -28.229 1.146 30.169 hybrid contribution 0.071 2.857 0.407 2.887 sum 10.654 -25.371 1.553 27.561 Atomic orbital electron populations 1.70155 1.06056 1.25244 1.58300 1.25556 0.96586 1.00679 1.02679 0.85168 0.77548 0.79556 0.77656 1.20921 1.21748 1.20107 1.19317 0.90602 0.83798 1.42880 0.90796 1.44441 1.02586 1.00270 1.86474 1.21366 0.82858 0.92491 0.97663 1.22590 0.97696 0.94844 1.00800 1.22182 0.94557 0.95178 0.99473 0.90066 1.21797 0.96787 0.94932 1.01298 1.22193 0.87786 0.91479 1.00470 1.48078 1.14353 1.06665 1.63968 1.17451 0.80977 0.87063 0.76154 1.90747 1.52443 1.56095 1.48696 1.19487 1.20188 0.95016 1.00825 1.24433 0.93998 0.87969 0.98603 1.77505 1.20949 1.22465 0.94795 1.46281 1.35583 1.07600 1.13908 1.22483 0.93393 0.95166 0.91589 1.21551 1.01803 0.98367 0.94707 1.21824 0.92909 0.92053 1.00279 1.20809 1.01681 1.02275 0.92314 1.19463 0.96932 0.85785 0.95505 1.21192 0.97079 0.80570 1.00377 1.21000 0.93281 0.86247 0.95390 0.98088 0.94336 0.98353 0.95667 0.89336 0.91448 0.86761 0.92340 0.88899 0.88032 0.75913 0.77774 0.77638 0.80513 0.85054 0.92608 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.47 10.43 21.65 0.23 -58.25 16 2 C -0.06 -3.66 5.49 84.86 0.47 -3.20 16 3 Si 0.97 48.01 29.55 68.60 2.03 50.03 16 4 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 5 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 7 C -0.24 -13.94 9.88 84.03 0.83 -13.11 16 8 H 0.07 4.31 7.41 -2.91 -0.02 4.29 16 9 N -0.61 -32.75 3.35 -670.23 -2.24 -34.99 16 10 C 0.18 9.11 5.46 86.85 0.47 9.58 16 11 C -0.12 -4.34 6.54 31.62 0.21 -4.13 16 12 C -0.09 -3.11 2.62 -10.09 -0.03 -3.14 16 13 H 0.08 2.67 8.13 -2.39 -0.02 2.66 16 14 C -0.11 -2.61 5.72 30.56 0.17 -2.44 16 15 C 0.10 2.32 5.13 86.66 0.44 2.76 16 16 N -0.60 -19.67 3.02 -824.50 -2.49 -22.16 16 17 C 0.59 21.20 7.53 86.42 0.65 21.85 16 18 O -0.60 -26.68 16.44 -4.42 -0.07 -26.76 16 19 C -0.34 -9.72 5.18 -19.90 -0.10 -9.82 16 20 C 0.13 2.85 9.56 85.42 0.82 3.67 16 21 N -0.34 -7.50 12.57 -56.62 -0.71 -8.21 16 22 N -0.27 -5.58 3.86 -187.27 -0.72 -6.30 16 23 C 0.10 1.09 11.17 83.31 0.93 2.02 16 24 C -0.14 -0.95 9.98 22.03 0.22 -0.73 16 25 C -0.05 -0.55 10.09 22.32 0.23 -0.33 16 26 C -0.15 -3.34 10.07 22.30 0.22 -3.11 16 27 C 0.14 3.72 6.77 39.50 0.27 3.98 16 28 C 0.13 5.37 5.67 85.57 0.49 5.86 16 29 C 0.15 6.45 2.74 45.43 0.12 6.57 16 30 H 0.00 0.08 7.93 -2.38 -0.02 0.06 16 31 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.00 -0.10 7.77 -2.39 -0.02 -0.12 16 33 H 0.03 1.40 7.19 -2.39 -0.02 1.38 16 34 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 36 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 1.52 7.99 -2.39 -0.02 1.50 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.10 1.98 4.96 -2.38 -0.01 1.97 16 40 H 0.22 3.36 7.27 -2.91 -0.02 3.33 16 41 H 0.21 0.75 8.06 -2.91 -0.02 0.73 16 42 H 0.21 -0.59 8.06 -2.91 -0.02 -0.62 16 43 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 44 H 0.13 3.44 8.04 -2.91 -0.02 3.42 16 45 H 0.06 2.67 6.73 -2.38 -0.02 2.65 16 46 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -85.42 366.74 3.42 -82.00 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 1.00 Total: 8.33 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 6.41 Total: 16.30 kcal Atomic # 7 Polarization: -123.97 SS G_CDS: -5.94 Total: -129.91 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.07 Total: -26.76 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.03 kcal Total: -85.42 3.42 -82.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042271630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.693 kcal (2) G-P(sol) polarization free energy of solvation -85.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds