Wall clock time and date at job start Sat Apr 11 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48501 * 109.47040 * 270.00136 * 3 2 1 5 5 H 1.48493 * 109.47338 * 30.00352 * 3 2 1 6 6 H 1.48506 * 109.47143 * 150.00390 * 3 2 1 7 7 C 1.38816 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00248 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99778 * 359.97438 * 7 2 1 10 10 C 1.46890 * 125.35895 * 0.02802 * 9 7 2 11 11 C 1.54520 * 106.66107 * 164.88369 * 10 9 7 12 12 C 1.53315 * 102.38494 * 27.58964 * 11 10 9 13 13 H 1.08997 * 105.08460 * 80.46391 * 12 11 10 14 14 C 1.48615 * 114.95707 * 196.30759 * 12 11 10 15 15 C 1.50979 * 116.02769 * 90.57855 * 14 12 11 16 16 N 1.44473 * 113.13365 * 32.07513 * 15 14 12 17 17 C 1.34771 * 117.14003 * 148.28024 * 16 15 14 18 18 O 1.21721 * 119.99901 * 4.16072 * 17 16 15 19 19 C 1.46564 * 120.00485 * 184.16515 * 17 16 15 20 20 C 1.40551 * 126.57730 * 315.16933 * 19 17 16 21 21 N 1.30745 * 108.74765 * 180.02562 * 20 19 17 22 22 N 1.40018 * 109.59868 * 359.97438 * 21 20 19 23 23 C 1.36250 * 132.01161 * 179.97438 * 22 21 20 24 24 C 1.35183 * 120.70736 * 180.02562 * 23 22 21 25 25 C 1.40158 * 120.31734 * 0.25142 * 24 23 22 26 26 C 1.36454 * 119.41266 * 359.47332 * 25 24 23 27 27 C 1.36574 * 107.91140 * 0.02562 * 22 21 20 28 28 C 1.43942 * 125.72619 * 328.56241 * 16 15 14 29 29 C 1.48177 * 125.35863 * 180.02562 * 9 7 2 30 30 H 1.08991 * 109.74654 * 57.25255 * 29 9 7 31 31 H 0.97003 * 119.99849 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.02024 * 45.58115 * 10 9 7 33 33 H 1.09002 * 110.05673 * 284.20011 * 10 9 7 34 34 H 1.09002 * 110.82454 * 269.35946 * 11 10 9 35 35 H 1.09004 * 110.98835 * 145.88905 * 11 10 9 36 36 H 1.08999 * 108.17017 * 328.87778 * 14 12 11 37 37 H 1.09004 * 108.01080 * 212.15785 * 14 12 11 38 38 H 1.09001 * 108.75226 * 271.13849 * 15 14 12 39 39 H 1.09000 * 108.65627 * 152.95158 * 15 14 12 40 40 H 1.08000 * 125.63166 * 0.06286 * 20 19 17 41 41 H 1.08003 * 119.64509 * 0.02562 * 23 22 21 42 42 H 1.07997 * 119.84057 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.29590 * 179.72521 * 25 24 23 44 44 H 1.07998 * 120.37750 * 180.22108 * 26 25 24 45 45 H 1.08997 * 108.41811 * 152.50562 * 28 16 15 46 46 H 1.09002 * 108.41749 * 269.75449 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1369 -2.5252 -0.0006 11 6 -0.4445 -3.9895 -0.3866 12 6 0.8071 -4.7281 0.1016 13 1 0.6569 -4.8635 1.1727 14 6 0.9871 -6.0936 -0.4567 15 6 1.7876 -6.1871 -1.7334 16 7 2.8200 -5.1812 -1.8311 17 6 3.9426 -5.5151 -2.4978 18 8 4.0232 -6.5965 -3.0507 19 6 5.0665 -4.5763 -2.5571 20 6 4.9928 -3.1970 -2.8173 21 7 6.2013 -2.6987 -2.7879 22 7 7.1221 -3.7159 -2.5089 23 6 8.4780 -3.7071 -2.3753 24 6 9.1519 -4.8460 -2.0990 25 6 8.4629 -6.0575 -1.9508 26 6 7.1043 -6.0756 -2.0770 27 6 6.4277 -4.8831 -2.3645 28 6 2.7571 -3.8555 -1.2738 29 6 1.9434 -3.7349 -0.0005 30 1 2.6013 -3.8383 0.8622 31 1 -0.4850 0.8401 0.0004 32 1 -0.5753 -1.8464 -0.7321 33 1 -0.5326 -2.3100 0.9920 34 1 -0.5576 -4.0901 -1.4661 35 1 -1.3339 -4.3508 0.1298 36 1 0.0004 -6.5177 -0.6424 37 1 1.4805 -6.7045 0.2993 38 1 1.1103 -6.0774 -2.5804 39 1 2.2522 -7.1719 -1.7823 40 1 4.0874 -2.6404 -3.0091 41 1 9.0202 -2.7803 -2.4914 42 1 10.2267 -4.8230 -1.9965 43 1 9.0021 -6.9679 -1.7344 44 1 6.5574 -6.9998 -1.9623 45 1 3.7735 -3.5202 -1.0674 46 1 2.3235 -3.1888 -2.0192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042271631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:57 Heat of formation + Delta-G solvation = 116.735181 kcal Electronic energy + Delta-G solvation = -30363.347738 eV Core-core repulsion = 26449.216073 eV Total energy + Delta-G solvation = -3914.131665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.23862 -40.11017 -38.17188 -37.31520 -35.14467 -33.59407 -32.95777 -31.69307 -30.90722 -29.47023 -29.02950 -28.24521 -25.06905 -24.23105 -23.94830 -23.51608 -22.27723 -21.90030 -20.35937 -19.72717 -17.94497 -17.39780 -16.93072 -16.69652 -16.46188 -16.19352 -15.70559 -15.47727 -15.14544 -14.85547 -14.72709 -14.65875 -13.91066 -13.74870 -13.59517 -13.24105 -12.65483 -12.54457 -12.35360 -12.27926 -12.07766 -11.90365 -11.77473 -11.51503 -11.28120 -11.01701 -10.90609 -10.85183 -10.73277 -10.56815 -10.13876 -9.96467 -9.85914 -9.77894 -9.59328 -9.54107 -9.38216 -8.64437 -8.15450 -7.68865 -6.91723 -5.72099 -3.10747 0.52018 0.89161 2.08729 2.32064 3.00157 3.25504 3.38605 3.44682 3.45572 3.60079 4.12120 4.41559 4.44987 4.52944 4.68190 4.88332 4.99101 5.05019 5.09821 5.24858 5.28831 5.35288 5.39383 5.46137 5.55810 5.65624 5.75181 5.77518 5.82417 5.91526 5.97280 6.03317 6.15809 6.16887 6.23344 6.29937 6.36895 6.44417 6.57693 6.61573 6.70093 6.87169 6.94753 7.07691 7.43155 7.52337 7.62521 7.72664 7.82741 8.26282 8.51241 9.18147 9.77536 10.41578 11.34981 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010471 B = 0.004455 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.498446 B = 6283.609555 C = 8485.347677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.004 4.004 3 Si 0.909 3.091 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.596 5.596 10 C 0.167 3.833 11 C -0.137 4.137 12 C -0.092 4.092 13 H 0.055 0.945 14 C -0.107 4.107 15 C 0.124 3.876 16 N -0.583 5.583 17 C 0.590 3.410 18 O -0.557 6.557 19 C -0.301 4.301 20 C 0.128 3.872 21 N -0.315 5.315 22 N -0.270 5.270 23 C 0.115 3.885 24 C -0.167 4.167 25 C -0.079 4.079 26 C -0.108 4.108 27 C 0.151 3.849 28 C 0.094 3.906 29 C 0.165 3.835 30 H 0.040 0.960 31 H 0.252 0.748 32 H 0.083 0.917 33 H 0.019 0.981 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.204 0.796 41 H 0.171 0.829 42 H 0.156 0.844 43 H 0.143 0.857 44 H 0.151 0.849 45 H 0.072 0.928 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.626 -12.725 -2.962 18.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.200 4.200 3 Si 0.740 3.260 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.321 5.321 10 C 0.042 3.958 11 C -0.175 4.175 12 C -0.111 4.111 13 H 0.073 0.927 14 C -0.146 4.146 15 C 0.001 3.999 16 N -0.314 5.314 17 C 0.378 3.622 18 O -0.437 6.437 19 C -0.315 4.315 20 C -0.052 4.052 21 N -0.135 5.135 22 N -0.034 5.034 23 C -0.012 4.012 24 C -0.189 4.189 25 C -0.102 4.102 26 C -0.127 4.127 27 C 0.031 3.969 28 C -0.031 4.031 29 C 0.057 3.943 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.221 0.779 41 H 0.188 0.812 42 H 0.173 0.827 43 H 0.161 0.839 44 H 0.169 0.831 45 H 0.090 0.910 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.119 -11.815 -3.329 17.966 hybrid contribution -0.054 0.439 0.294 0.530 sum 13.065 -11.377 -3.035 17.588 Atomic orbital electron populations 1.69934 1.04864 1.24954 1.56855 1.24766 0.95653 0.97593 1.02012 0.86160 0.78619 0.83553 0.77710 1.21434 1.21684 1.20720 1.19009 0.90431 0.82219 1.44023 0.90490 1.44775 1.01601 0.98969 1.86736 1.21408 0.84094 0.90279 0.99991 1.22669 0.95588 0.99047 1.00212 1.20066 0.96649 0.93633 1.00791 0.92662 1.20353 1.00386 0.97052 0.96763 1.20456 0.89753 0.91900 0.97746 1.46607 1.16538 1.14940 1.53309 1.17136 0.81367 0.85252 0.78414 1.90734 1.82276 1.24266 1.46389 1.19661 0.91662 0.94803 1.25395 1.24343 0.96090 0.92450 0.92343 1.77686 0.98093 1.08333 1.29423 1.46116 1.06088 1.07244 1.43951 1.21574 0.79553 1.01307 0.98744 1.20864 1.01273 0.91369 1.05345 1.21248 0.93739 0.98560 0.96658 1.20690 0.94374 0.96554 1.01095 1.19225 0.91353 0.87591 0.98756 1.21916 1.01805 0.81148 0.98232 1.20221 0.92944 0.87058 0.94038 0.94226 0.93723 0.89885 0.96258 0.92496 0.92175 0.90688 0.92313 0.92703 0.90024 0.77941 0.81222 0.82679 0.83920 0.83123 0.90977 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.04 10.23 55.49 0.57 -25.48 16 2 C 0.00 -0.11 5.48 -17.43 -0.10 -0.20 16 3 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.03 9.82 -15.06 -0.15 -6.18 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.31 2.91 -164.94 -0.48 -14.79 16 10 C 0.17 3.90 5.53 -3.03 -0.02 3.88 16 11 C -0.14 -2.47 6.47 -25.77 -0.17 -2.64 16 12 C -0.09 -1.56 2.32 -93.47 -0.22 -1.78 16 13 H 0.05 0.94 8.01 -51.93 -0.42 0.52 16 14 C -0.11 -1.48 5.55 -29.89 -0.17 -1.64 16 15 C 0.12 1.85 6.14 -6.14 -0.04 1.81 16 16 N -0.58 -9.80 3.13 -180.95 -0.57 -10.37 16 17 C 0.59 10.32 7.41 -12.91 -0.10 10.22 16 18 O -0.56 -10.66 16.36 5.17 0.08 -10.58 16 19 C -0.30 -4.99 5.00 -104.68 -0.52 -5.51 16 20 C 0.13 2.09 9.57 -17.14 -0.16 1.93 16 21 N -0.31 -5.16 12.58 30.75 0.39 -4.78 16 22 N -0.27 -3.83 3.86 -10.54 -0.04 -3.87 16 23 C 0.11 1.13 11.17 -16.68 -0.19 0.94 16 24 C -0.17 -1.23 9.98 -39.95 -0.40 -1.63 16 25 C -0.08 -0.65 10.09 -39.50 -0.40 -1.05 16 26 C -0.11 -1.26 10.08 -39.53 -0.40 -1.66 16 27 C 0.15 2.24 6.79 -84.07 -0.57 1.67 16 28 C 0.09 1.72 4.27 -6.11 -0.03 1.69 16 29 C 0.17 3.28 3.53 -68.60 -0.24 3.04 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.08 2.18 6.44 -51.93 -0.33 1.85 16 33 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.89 7.94 -51.93 -0.41 0.48 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.19 7.09 -51.93 -0.37 0.82 16 40 H 0.20 3.16 6.85 -52.49 -0.36 2.80 16 41 H 0.17 1.20 8.06 -52.48 -0.42 0.78 16 42 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 44 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 45 H 0.07 1.34 5.14 -51.93 -0.27 1.07 16 46 H 0.07 1.39 7.20 -51.93 -0.37 1.01 16 LS Contribution 364.98 15.07 5.50 5.50 Total: -1.00 -32.73 364.98 -9.73 -42.46 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.30 Total: 2.32 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -3.85 Total: 2.90 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.13 Total: -59.28 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.73 -9.73 -42.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042271631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.193 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds