Wall clock time and date at job start Sat Apr 11 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48497 * 109.47547 * 274.98239 * 3 2 1 5 5 H 1.48511 * 109.47076 * 34.98277 * 3 2 1 6 6 H 1.48496 * 109.47217 * 154.97767 * 3 2 1 7 7 C 1.38806 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00475 * 188.08717 * 7 2 1 9 9 N 1.36945 * 119.99698 * 8.08536 * 7 2 1 10 10 C 1.47433 * 126.06253 * 353.88689 * 9 7 2 11 11 C 1.54510 * 107.14727 * 178.35513 * 10 9 7 12 12 C 1.56027 * 102.61269 * 337.15453 * 11 10 9 13 13 H 1.08995 * 112.85590 * 157.06794 * 12 11 10 14 14 C 1.53093 * 106.39590 * 281.62344 * 12 11 10 15 15 C 1.52841 * 110.57268 * 164.58623 * 14 12 11 16 16 N 1.47154 * 107.97308 * 302.64041 * 15 14 12 17 17 C 1.34781 * 121.21403 * 237.30779 * 16 15 14 18 18 O 1.21587 * 120.00112 * 172.89131 * 17 16 15 19 19 C 1.47586 * 119.99863 * 352.89539 * 17 16 15 20 20 C 1.36572 * 125.92037 * 173.14774 * 19 17 16 21 21 N 1.36196 * 107.09974 * 179.83963 * 20 19 17 22 22 C 1.36680 * 132.29717 * 180.02562 * 21 20 19 23 23 C 1.34851 * 120.63832 * 180.38405 * 22 21 20 24 24 C 1.40572 * 120.34539 * 0.02562 * 23 22 21 25 25 C 1.35897 * 119.72963 * 359.97438 * 24 23 22 26 26 C 1.37275 * 107.33666 * 0.41996 * 21 20 19 27 27 N 1.32232 * 108.37567 * 359.73095 * 26 21 20 28 28 C 1.46755 * 117.57218 * 57.28766 * 16 15 14 29 29 C 1.46473 * 126.05769 * 173.86171 * 9 7 2 30 30 H 1.09003 * 108.42058 * 90.12977 * 29 9 7 31 31 H 0.96996 * 120.00212 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.89908 * 297.73358 * 10 9 7 33 33 H 1.08996 * 109.90119 * 58.79685 * 10 9 7 34 34 H 1.08991 * 110.78083 * 95.43648 * 11 10 9 35 35 H 1.08999 * 110.77432 * 218.68387 * 11 10 9 36 36 H 1.09003 * 109.25510 * 284.86398 * 14 12 11 37 37 H 1.08996 * 109.25956 * 44.29950 * 14 12 11 38 38 H 1.09002 * 109.76121 * 62.25898 * 15 14 12 39 39 H 1.09004 * 109.75997 * 183.02375 * 15 14 12 40 40 H 1.08007 * 126.45042 * 359.96701 * 20 19 17 41 41 H 1.07994 * 119.67925 * 0.36273 * 22 21 20 42 42 H 1.08000 * 119.82383 * 179.97438 * 23 22 21 43 43 H 1.07999 * 120.13611 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.33135 * 179.97438 * 25 24 23 45 45 H 1.08997 * 109.22661 * 187.16589 * 28 16 15 46 46 H 1.09002 * 109.22581 * 67.80074 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1073 -1.3947 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4121 0.5922 7 6 2.0103 -1.2021 -0.0005 8 1 3.0822 -1.2069 0.1310 9 7 1.3357 -2.3821 -0.1679 10 6 -0.1284 -2.5433 -0.2313 11 6 -0.4115 -4.0434 -0.4698 12 6 0.9204 -4.5440 -1.1101 13 1 1.0713 -5.6166 -0.9892 14 6 0.8871 -4.1044 -2.5761 15 6 2.2802 -4.2004 -3.1974 16 7 3.1926 -3.3682 -2.3972 17 6 3.8974 -2.3659 -2.9587 18 8 4.5443 -1.6111 -2.2586 19 6 3.8840 -2.1847 -4.4233 20 6 4.4410 -1.1417 -5.1067 21 7 4.2083 -1.3605 -6.4307 22 6 4.5360 -0.6507 -7.5518 23 6 4.1729 -1.0901 -8.7739 24 6 3.4498 -2.2876 -8.9122 25 6 3.1163 -3.0049 -7.8071 26 6 3.5022 -2.5332 -6.5335 27 7 3.3159 -3.0158 -5.3165 28 6 3.3067 -3.6690 -0.9653 29 6 1.9410 -3.7076 -0.3161 30 1 2.0513 -4.1486 0.6747 31 1 -0.4850 0.8400 0.0004 32 1 -0.5777 -2.2259 0.7096 33 1 -0.5315 -1.9517 -1.0532 34 1 -0.6037 -4.5553 0.4730 35 1 -1.2475 -4.1746 -1.1568 36 1 0.2020 -4.7474 -3.1287 37 1 0.5376 -3.0736 -2.6346 38 1 2.6191 -5.2363 -3.1842 39 1 2.2520 -3.8342 -4.2237 40 1 4.9686 -0.3024 -4.6781 41 1 5.0907 0.2711 -7.4580 42 1 4.4384 -0.5186 -9.6510 43 1 3.1604 -2.6362 -9.8925 44 1 2.5605 -3.9260 -7.9020 45 1 3.9114 -2.9004 -0.4841 46 1 3.7914 -4.6372 -0.8395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042334929.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:00 Heat of formation + Delta-G solvation = 109.111372 kcal Electronic energy + Delta-G solvation = -30698.171790 eV Core-core repulsion = 26783.709531 eV Total energy + Delta-G solvation = -3914.462258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.95019 -39.71010 -38.07014 -37.11786 -34.85999 -33.83708 -32.68642 -31.14709 -30.54463 -29.05172 -28.84765 -28.21184 -25.11210 -24.41161 -23.56156 -22.92290 -22.26832 -22.14812 -19.86729 -19.58484 -18.33283 -17.84932 -17.06333 -16.62228 -16.41686 -16.10752 -15.45617 -15.13788 -14.81793 -14.65901 -14.48031 -14.12758 -14.01120 -13.78438 -13.37158 -12.92587 -12.77286 -12.60746 -12.47985 -12.02100 -11.93924 -11.80561 -11.45852 -11.30744 -11.22850 -11.15583 -10.71901 -10.69857 -10.65253 -10.12977 -9.95121 -9.74023 -9.69815 -9.53589 -9.41488 -9.06604 -8.93843 -8.38387 -8.07973 -7.88371 -6.64587 -5.55458 -2.84736 0.45626 1.06889 2.19420 2.34793 3.23403 3.51351 3.54173 3.58971 3.64588 3.89919 3.98921 4.27762 4.48940 4.60462 4.67936 4.80913 5.08683 5.24190 5.29002 5.34397 5.43833 5.54155 5.57413 5.68208 5.76166 5.80003 5.88579 5.91746 5.99095 6.01462 6.15706 6.17334 6.22788 6.31016 6.41026 6.43891 6.57324 6.69293 6.71140 6.75950 6.85251 6.90789 7.15163 7.33996 7.59810 7.70515 7.78247 8.01624 8.08639 8.41184 8.77744 9.39723 10.01023 10.66457 11.57671 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011844 B = 0.004338 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.537061 B = 6453.294939 C = 7672.905840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.903 3.097 4 H -0.293 1.293 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.206 4.206 8 H 0.082 0.918 9 N -0.588 5.588 10 C 0.178 3.822 11 C -0.144 4.144 12 C -0.102 4.102 13 H 0.074 0.926 14 C -0.119 4.119 15 C 0.082 3.918 16 N -0.574 5.574 17 C 0.600 3.400 18 O -0.530 6.530 19 C 0.027 3.973 20 C -0.021 4.021 21 N -0.365 5.365 22 C 0.059 3.941 23 C -0.144 4.144 24 C -0.105 4.105 25 C -0.074 4.074 26 C 0.219 3.781 27 N -0.460 5.460 28 C 0.113 3.887 29 C 0.155 3.845 30 H 0.025 0.975 31 H 0.248 0.752 32 H 0.037 0.963 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.135 0.865 40 H 0.196 0.804 41 H 0.164 0.836 42 H 0.150 0.850 43 H 0.142 0.858 44 H 0.152 0.848 45 H 0.094 0.906 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.290 -8.035 -18.866 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.203 4.203 3 Si 0.735 3.265 4 H -0.221 1.221 5 H -0.223 1.223 6 H -0.205 1.205 7 C -0.335 4.335 8 H 0.099 0.901 9 N -0.314 5.314 10 C 0.053 3.947 11 C -0.182 4.182 12 C -0.121 4.121 13 H 0.092 0.908 14 C -0.158 4.158 15 C -0.041 4.041 16 N -0.305 5.305 17 C 0.386 3.614 18 O -0.406 6.406 19 C -0.105 4.105 20 C -0.155 4.155 21 N -0.037 5.037 22 C -0.062 4.062 23 C -0.165 4.165 24 C -0.129 4.129 25 C -0.095 4.095 26 C -0.025 4.025 27 N -0.182 5.182 28 C -0.010 4.010 29 C 0.046 3.954 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.151 0.849 40 H 0.213 0.787 41 H 0.182 0.818 42 H 0.168 0.832 43 H 0.160 0.840 44 H 0.170 0.830 45 H 0.113 0.887 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.222 -8.058 -18.156 20.815 hybrid contribution 0.636 1.728 -0.181 1.851 sum 6.859 -6.330 -18.337 20.576 Atomic orbital electron populations 1.69986 1.04822 1.24567 1.57967 1.24707 0.95501 0.97334 1.02799 0.86185 0.78971 0.84071 0.77280 1.22075 1.22284 1.20486 1.19037 0.91436 0.82256 1.40749 0.90056 1.44294 1.01385 1.00996 1.84702 1.21211 0.84466 0.88674 1.00330 1.23152 0.96140 0.99870 0.99039 1.22380 0.96840 0.97640 0.95276 0.90794 1.21804 0.96304 1.02745 0.94905 1.22561 0.88597 0.94276 0.98643 1.47531 1.41979 1.31797 1.09184 1.16741 0.80155 0.80598 0.83952 1.90793 1.44500 1.43436 1.61837 1.20838 1.01340 0.93655 0.94661 1.22650 1.09051 1.03955 0.79835 1.42746 1.36273 1.18386 1.06318 1.21693 1.01766 0.98177 0.84557 1.20811 1.01223 0.98227 0.96225 1.21027 0.98192 0.94577 0.99079 1.20337 1.00669 1.01254 0.87195 1.21192 0.99358 0.86571 0.95394 1.70631 1.22661 1.28220 0.96688 1.21451 0.99067 1.00284 0.80248 1.20702 0.91107 0.88411 0.95166 0.95772 0.94202 0.94458 0.93564 0.92902 0.92401 0.92386 0.90565 0.92742 0.84857 0.78746 0.81819 0.83193 0.84002 0.82991 0.88745 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.38 10.44 55.49 0.58 -27.80 16 2 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 3 Si 0.90 24.15 29.56 -169.99 -5.03 19.12 16 4 H -0.29 -7.92 7.11 56.52 0.40 -7.52 16 5 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 6 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.21 -5.99 9.63 -15.06 -0.15 -6.14 16 8 H 0.08 2.41 6.62 -52.49 -0.35 2.06 16 9 N -0.59 -15.28 3.20 -164.41 -0.53 -15.81 16 10 C 0.18 4.45 4.63 -2.74 -0.01 4.43 16 11 C -0.14 -2.77 6.32 -24.32 -0.15 -2.93 16 12 C -0.10 -1.83 3.68 -88.43 -0.33 -2.16 16 13 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 14 C -0.12 -2.13 5.04 -26.76 -0.14 -2.26 16 15 C 0.08 1.40 6.18 -3.77 -0.02 1.38 16 16 N -0.57 -11.44 2.97 -175.30 -0.52 -11.96 16 17 C 0.60 12.72 7.70 -12.44 -0.10 12.62 16 18 O -0.53 -12.73 16.35 5.29 0.09 -12.65 16 19 C 0.03 0.50 6.67 -83.45 -0.56 -0.06 16 20 C -0.02 -0.32 11.47 -16.22 -0.19 -0.50 16 21 N -0.37 -4.67 2.93 -62.37 -0.18 -4.85 16 22 C 0.06 0.51 10.93 -16.59 -0.18 0.33 16 23 C -0.14 -0.94 9.98 -39.90 -0.40 -1.34 16 24 C -0.10 -0.72 10.06 -39.54 -0.40 -1.12 16 25 C -0.07 -0.71 10.11 -39.30 -0.40 -1.11 16 26 C 0.22 2.97 7.80 -156.04 -1.22 1.76 16 27 N -0.46 -7.48 7.77 -9.35 -0.07 -7.56 16 28 C 0.11 2.27 5.69 -4.78 -0.03 2.24 16 29 C 0.15 3.28 2.97 -68.30 -0.20 3.08 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.04 1.03 7.70 -51.93 -0.40 0.63 16 33 H 0.05 1.29 6.93 -51.93 -0.36 0.93 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.02 7.98 -51.93 -0.41 0.61 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.68 6.86 -51.93 -0.36 1.32 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.13 2.30 4.05 -62.96 -0.26 2.05 16 40 H 0.20 2.68 8.06 -52.48 -0.42 2.25 16 41 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 43 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 44 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.09 2.16 5.57 -51.93 -0.29 1.87 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 362.05 15.07 5.46 5.46 Total: -1.00 -36.18 362.05 -10.96 -47.15 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.21 Total: 1.01 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -4.55 Total: 7.88 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: -0.72 Total: -67.97 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.03 Total: 19.12 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.18 -10.96 -47.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042334929.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.260 kcal (2) G-P(sol) polarization free energy of solvation -36.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds