Wall clock time and date at job start Sat Apr 11 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48497 * 109.47547 * 274.98239 * 3 2 1 5 5 H 1.48511 * 109.47076 * 34.98277 * 3 2 1 6 6 H 1.48496 * 109.47217 * 154.97767 * 3 2 1 7 7 C 1.38806 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00475 * 188.08717 * 7 2 1 9 9 N 1.36945 * 119.99698 * 8.08536 * 7 2 1 10 10 C 1.47433 * 126.06253 * 353.88689 * 9 7 2 11 11 C 1.54510 * 107.14727 * 178.35513 * 10 9 7 12 12 C 1.56027 * 102.61269 * 337.15453 * 11 10 9 13 13 H 1.08995 * 112.85590 * 157.06794 * 12 11 10 14 14 C 1.53093 * 106.39590 * 281.62344 * 12 11 10 15 15 C 1.52841 * 110.57268 * 164.58623 * 14 12 11 16 16 N 1.47154 * 107.97308 * 302.64041 * 15 14 12 17 17 C 1.34781 * 121.21403 * 237.30779 * 16 15 14 18 18 O 1.21587 * 120.00112 * 172.89131 * 17 16 15 19 19 C 1.47586 * 119.99863 * 352.89539 * 17 16 15 20 20 C 1.36572 * 125.92037 * 173.14774 * 19 17 16 21 21 N 1.36196 * 107.09974 * 179.83963 * 20 19 17 22 22 C 1.36680 * 132.29717 * 180.02562 * 21 20 19 23 23 C 1.34851 * 120.63832 * 180.38405 * 22 21 20 24 24 C 1.40572 * 120.34539 * 0.02562 * 23 22 21 25 25 C 1.35897 * 119.72963 * 359.97438 * 24 23 22 26 26 C 1.37275 * 107.33666 * 0.41996 * 21 20 19 27 27 N 1.32232 * 108.37567 * 359.73095 * 26 21 20 28 28 C 1.46755 * 117.57218 * 57.28766 * 16 15 14 29 29 C 1.46473 * 126.05769 * 173.86171 * 9 7 2 30 30 H 1.09003 * 108.42058 * 90.12977 * 29 9 7 31 31 H 0.96996 * 120.00212 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.89908 * 297.73358 * 10 9 7 33 33 H 1.08996 * 109.90119 * 58.79685 * 10 9 7 34 34 H 1.08991 * 110.78083 * 95.43648 * 11 10 9 35 35 H 1.08999 * 110.77432 * 218.68387 * 11 10 9 36 36 H 1.09003 * 109.25510 * 284.86398 * 14 12 11 37 37 H 1.08996 * 109.25956 * 44.29950 * 14 12 11 38 38 H 1.09002 * 109.76121 * 62.25898 * 15 14 12 39 39 H 1.09004 * 109.75997 * 183.02375 * 15 14 12 40 40 H 1.08007 * 126.45042 * 359.96701 * 20 19 17 41 41 H 1.07994 * 119.67925 * 0.36273 * 22 21 20 42 42 H 1.08000 * 119.82383 * 179.97438 * 23 22 21 43 43 H 1.07999 * 120.13611 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.33135 * 179.97438 * 25 24 23 45 45 H 1.08997 * 109.22661 * 187.16589 * 28 16 15 46 46 H 1.09002 * 109.22581 * 67.80074 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1073 -1.3947 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4121 0.5922 7 6 2.0103 -1.2021 -0.0005 8 1 3.0822 -1.2069 0.1310 9 7 1.3357 -2.3821 -0.1679 10 6 -0.1284 -2.5433 -0.2313 11 6 -0.4115 -4.0434 -0.4698 12 6 0.9204 -4.5440 -1.1101 13 1 1.0713 -5.6166 -0.9892 14 6 0.8871 -4.1044 -2.5761 15 6 2.2802 -4.2004 -3.1974 16 7 3.1926 -3.3682 -2.3972 17 6 3.8974 -2.3659 -2.9587 18 8 4.5443 -1.6111 -2.2586 19 6 3.8840 -2.1847 -4.4233 20 6 4.4410 -1.1417 -5.1067 21 7 4.2083 -1.3605 -6.4307 22 6 4.5360 -0.6507 -7.5518 23 6 4.1729 -1.0901 -8.7739 24 6 3.4498 -2.2876 -8.9122 25 6 3.1163 -3.0049 -7.8071 26 6 3.5022 -2.5332 -6.5335 27 7 3.3159 -3.0158 -5.3165 28 6 3.3067 -3.6690 -0.9653 29 6 1.9410 -3.7076 -0.3161 30 1 2.0513 -4.1486 0.6747 31 1 -0.4850 0.8400 0.0004 32 1 -0.5777 -2.2259 0.7096 33 1 -0.5315 -1.9517 -1.0532 34 1 -0.6037 -4.5553 0.4730 35 1 -1.2475 -4.1746 -1.1568 36 1 0.2020 -4.7474 -3.1287 37 1 0.5376 -3.0736 -2.6346 38 1 2.6191 -5.2363 -3.1842 39 1 2.2520 -3.8342 -4.2237 40 1 4.9686 -0.3024 -4.6781 41 1 5.0907 0.2711 -7.4580 42 1 4.4384 -0.5186 -9.6510 43 1 3.1604 -2.6362 -9.8925 44 1 2.5605 -3.9260 -7.9020 45 1 3.9114 -2.9004 -0.4841 46 1 3.7914 -4.6372 -0.8395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042334929.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:59 Heat of formation + Delta-G solvation = 86.538132 kcal Electronic energy + Delta-G solvation = -30699.150639 eV Core-core repulsion = 26783.709531 eV Total energy + Delta-G solvation = -3915.441107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.92099 -41.26919 -39.59461 -38.10429 -36.53630 -34.79898 -34.57964 -32.85690 -31.70695 -30.50142 -30.06355 -29.85096 -26.57064 -26.33526 -24.68240 -24.03644 -23.55134 -23.37601 -21.73726 -21.04779 -19.78964 -18.97283 -18.43187 -17.96965 -17.71930 -17.15783 -16.97068 -16.62802 -16.22007 -15.95258 -15.88731 -15.52182 -15.46556 -15.15584 -15.07006 -14.47138 -14.27450 -14.14822 -13.73719 -13.31406 -13.20372 -13.08568 -12.96501 -12.78368 -12.69500 -12.64796 -12.49960 -12.34420 -12.06295 -12.04502 -11.72932 -11.57616 -11.36941 -11.26730 -11.18760 -10.63650 -10.39540 -9.98716 -9.44418 -8.93856 -8.79294 -7.84929 -5.12831 -0.30833 0.20652 1.03048 1.33193 1.36151 1.43290 1.46587 2.10834 2.38002 2.47898 2.60559 2.98698 3.33596 3.41235 3.57337 3.74294 3.88830 3.92193 4.02681 4.09280 4.15002 4.20950 4.27074 4.38822 4.49396 4.54290 4.63266 4.64421 4.70690 4.73831 4.78626 4.90457 5.00721 5.02071 5.13108 5.16073 5.16553 5.26426 5.30336 5.44819 5.53559 5.57638 5.66039 5.71722 5.80043 5.82607 6.01745 6.23711 6.46691 6.64858 7.15349 7.23343 7.83386 8.47452 9.26886 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011844 B = 0.004338 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.537061 B = 6453.294939 C = 7672.905840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.954 3.046 4 H -0.299 1.299 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.199 4.199 8 H 0.068 0.932 9 N -0.606 5.606 10 C 0.186 3.814 11 C -0.128 4.128 12 C -0.085 4.085 13 H 0.123 0.877 14 C -0.113 4.113 15 C 0.082 3.918 16 N -0.578 5.578 17 C 0.587 3.413 18 O -0.578 6.578 19 C -0.009 4.009 20 C -0.032 4.032 21 N -0.366 5.366 22 C 0.032 3.968 23 C -0.125 4.125 24 C -0.076 4.076 25 C -0.103 4.103 26 C 0.214 3.786 27 N -0.486 5.486 28 C 0.114 3.886 29 C 0.143 3.857 30 H 0.032 0.968 31 H 0.242 0.758 32 H -0.001 1.001 33 H 0.006 0.994 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.024 0.976 38 H 0.086 0.914 39 H 0.135 0.865 40 H 0.198 0.802 41 H 0.190 0.810 42 H 0.196 0.804 43 H 0.186 0.814 44 H 0.170 0.830 45 H 0.056 0.944 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.494 -10.310 -22.852 25.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.256 4.256 3 Si 0.784 3.216 4 H -0.227 1.227 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.329 4.329 8 H 0.085 0.915 9 N -0.331 5.331 10 C 0.061 3.939 11 C -0.167 4.167 12 C -0.104 4.104 13 H 0.141 0.859 14 C -0.151 4.151 15 C -0.039 4.039 16 N -0.308 5.308 17 C 0.375 3.625 18 O -0.458 6.458 19 C -0.140 4.140 20 C -0.168 4.168 21 N -0.037 5.037 22 C -0.088 4.088 23 C -0.145 4.145 24 C -0.099 4.099 25 C -0.123 4.123 26 C -0.031 4.031 27 N -0.209 5.209 28 C -0.009 4.009 29 C 0.036 3.964 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.017 0.983 33 H 0.024 0.976 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.043 0.957 38 H 0.104 0.896 39 H 0.152 0.848 40 H 0.215 0.785 41 H 0.207 0.793 42 H 0.213 0.787 43 H 0.203 0.797 44 H 0.187 0.813 45 H 0.075 0.925 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.429 -10.381 -22.161 25.303 hybrid contribution 0.627 2.427 0.794 2.629 sum 7.056 -7.955 -21.368 23.867 Atomic orbital electron populations 1.70168 1.05672 1.24455 1.59722 1.25323 0.96302 0.99912 1.04087 0.85386 0.78079 0.81299 0.76792 1.22699 1.21541 1.20236 1.19100 0.90964 0.83893 1.38901 0.91452 1.44495 1.02193 1.02014 1.84395 1.20971 0.83700 0.92528 0.96725 1.23020 0.97718 0.95132 1.00779 1.22440 0.94114 0.99488 0.94391 0.85918 1.21744 0.97371 1.00421 0.95537 1.22750 0.87558 0.95313 0.98320 1.47723 1.42060 1.31795 1.09203 1.17308 0.79590 0.80140 0.85446 1.90733 1.46605 1.45154 1.63355 1.20466 1.04285 0.95848 0.93433 1.22615 1.09315 1.03627 0.81266 1.42837 1.36015 1.18601 1.06225 1.22468 1.02906 0.99306 0.84081 1.21483 0.98607 0.97809 0.96571 1.21655 0.94964 0.93309 0.99990 1.20721 1.02491 1.02966 0.86100 1.21840 0.98686 0.86605 0.95950 1.70417 1.24099 1.28844 0.97510 1.21390 0.98067 1.00954 0.80502 1.21021 0.92514 0.86586 0.96322 0.95053 0.94892 0.98323 0.97624 0.90983 0.90235 0.88680 0.95674 0.89586 0.84780 0.78543 0.79329 0.78744 0.79669 0.81257 0.92497 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.57 10.44 21.65 0.23 -61.34 16 2 C -0.06 -4.03 5.48 84.86 0.46 -3.56 16 3 Si 0.95 52.28 29.56 68.60 2.03 54.31 16 4 H -0.30 -16.51 7.11 99.48 0.71 -15.80 16 5 H -0.29 -15.35 7.11 99.48 0.71 -14.64 16 6 H -0.28 -14.90 7.11 99.48 0.71 -14.19 16 7 C -0.20 -12.20 9.63 84.03 0.81 -11.39 16 8 H 0.07 4.27 6.62 -2.91 -0.02 4.25 16 9 N -0.61 -32.79 3.20 -674.08 -2.15 -34.94 16 10 C 0.19 9.67 4.63 86.71 0.40 10.07 16 11 C -0.13 -4.75 6.32 32.16 0.20 -4.55 16 12 C -0.09 -2.85 3.68 -9.38 -0.03 -2.88 16 13 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 14 C -0.11 -3.84 5.04 30.57 0.15 -3.69 16 15 C 0.08 2.73 6.18 86.20 0.53 3.26 16 16 N -0.58 -23.59 2.97 -826.77 -2.45 -26.04 16 17 C 0.59 26.51 7.70 86.71 0.67 27.18 16 18 O -0.58 -30.12 16.35 -3.99 -0.07 -30.18 16 19 C -0.01 -0.34 6.67 40.80 0.27 -0.07 16 20 C -0.03 -1.05 11.47 83.63 0.96 -0.09 16 21 N -0.37 -9.16 2.93 -351.24 -1.03 -10.19 16 22 C 0.03 0.47 10.93 83.16 0.91 1.38 16 23 C -0.12 -0.99 9.98 22.06 0.22 -0.77 16 24 C -0.08 -0.64 10.06 22.30 0.22 -0.42 16 25 C -0.10 -1.65 10.11 22.45 0.23 -1.42 16 26 C 0.21 5.64 7.80 134.20 1.05 6.69 16 27 N -0.49 -16.08 7.77 -183.49 -1.43 -17.50 16 28 C 0.11 4.66 5.69 85.77 0.49 5.15 16 29 C 0.14 6.02 2.97 44.77 0.13 6.15 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 32 H 0.00 -0.09 7.70 -2.39 -0.02 -0.10 16 33 H 0.01 0.33 6.93 -2.39 -0.02 0.31 16 34 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.08 2.62 7.98 -2.39 -0.02 2.61 16 36 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.02 1.11 6.86 -2.39 -0.02 1.09 16 38 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.14 4.61 4.05 -24.16 -0.10 4.51 16 40 H 0.20 5.94 8.06 -2.91 -0.02 5.91 16 41 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 42 H 0.20 -0.11 8.06 -2.91 -0.02 -0.13 16 43 H 0.19 0.06 8.06 -2.91 -0.02 0.04 16 44 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 45 H 0.06 2.75 5.57 -2.39 -0.01 2.74 16 46 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -89.21 362.05 3.72 -85.49 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.92 Total: 9.39 kcal Atomic # 6 Polarization: 23.34 SS G_CDS: 7.68 Total: 31.02 kcal Atomic # 7 Polarization: -143.18 SS G_CDS: -6.84 Total: -150.02 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.07 Total: -30.18 kcal Atomic # 14 Polarization: 52.28 SS G_CDS: 2.03 Total: 54.31 kcal Total: -89.21 3.72 -85.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042334929.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.027 kcal (2) G-P(sol) polarization free energy of solvation -89.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds