Wall clock time and date at job start Sat Apr 11 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99820 * 2 1 4 4 H 1.48503 * 109.46914 * 274.99587 * 3 2 1 5 5 H 1.48501 * 109.47332 * 34.99710 * 3 2 1 6 6 H 1.48497 * 109.46741 * 154.99926 * 3 2 1 7 7 C 1.38811 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99772 * 174.89119 * 7 2 1 9 9 N 1.36933 * 120.00248 * 354.88502 * 7 2 1 10 10 C 1.48158 * 126.39827 * 355.05604 * 9 7 2 11 11 C 1.55302 * 107.04348 * 175.01838 * 10 9 7 12 12 C 1.53693 * 101.84668 * 337.53421 * 11 10 9 13 13 H 1.09001 * 111.10107 * 281.42664 * 12 11 10 14 14 C 1.51970 * 115.01133 * 153.49650 * 12 11 10 15 15 C 1.53892 * 107.28718 * 184.53945 * 14 12 11 16 16 N 1.46600 * 110.70648 * 51.80987 * 15 14 12 17 17 C 1.34778 * 119.74835 * 132.28181 * 16 15 14 18 18 O 1.21592 * 119.99976 * 6.44818 * 17 16 15 19 19 C 1.47594 * 119.99618 * 186.45432 * 17 16 15 20 20 C 1.36574 * 125.91644 * 187.14577 * 19 17 16 21 21 N 1.36194 * 107.09021 * 179.84045 * 20 19 17 22 22 C 1.36688 * 132.29144 * 180.02562 * 21 20 19 23 23 C 1.34845 * 120.63989 * 180.37531 * 22 21 20 24 24 C 1.40579 * 120.33993 * 0.02562 * 23 22 21 25 25 C 1.35893 * 119.73216 * 359.97438 * 24 23 22 26 26 C 1.37261 * 107.34507 * 0.41063 * 21 20 19 27 27 N 1.32234 * 108.37722 * 359.74316 * 26 21 20 28 28 C 1.47893 * 119.97909 * 311.80457 * 16 15 14 29 29 C 1.45510 * 126.39893 * 175.07687 * 9 7 2 30 30 H 1.08994 * 109.57540 * 93.34654 * 29 9 7 31 31 H 0.97004 * 120.00346 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.91909 * 55.66953 * 10 9 7 33 33 H 1.09003 * 110.08677 * 294.45989 * 10 9 7 34 34 H 1.09000 * 110.95517 * 95.68020 * 11 10 9 35 35 H 1.09000 * 110.95649 * 219.38165 * 11 10 9 36 36 H 1.08996 * 109.89346 * 303.98165 * 14 12 11 37 37 H 1.09004 * 109.89335 * 65.01797 * 14 12 11 38 38 H 1.09002 * 109.23393 * 172.12816 * 15 14 12 39 39 H 1.09001 * 109.22703 * 291.49307 * 15 14 12 40 40 H 1.08003 * 126.45302 * 359.96005 * 20 19 17 41 41 H 1.08000 * 119.67873 * 0.40547 * 22 21 20 42 42 H 1.07996 * 119.82644 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.12896 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.32163 * 179.97438 * 25 24 23 45 45 H 1.08997 * 110.46989 * 292.90532 * 28 16 15 46 46 H 1.08997 * 109.62952 * 171.35899 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3920 2.1074 -1.3948 5 1 1.5044 2.6199 0.8030 6 1 3.5965 1.4120 0.5917 7 6 2.0102 -1.2022 0.0005 8 1 3.0869 -1.2041 -0.0827 9 7 1.3296 -2.3856 0.1068 10 6 -0.1263 -2.5456 0.3301 11 6 -0.4349 -4.0655 0.2495 12 6 0.7544 -4.5857 -0.5734 13 1 0.6159 -4.3821 -1.6352 14 6 1.1193 -6.0402 -0.3266 15 6 2.3886 -6.3383 -1.1441 16 7 3.4299 -5.3448 -0.8654 17 6 4.6869 -5.7507 -0.5972 18 8 4.9816 -6.9257 -0.7017 19 6 5.7054 -4.7688 -0.1767 20 6 7.0376 -5.0185 -0.0084 21 7 7.6181 -3.8491 0.3793 22 6 8.9096 -3.5196 0.6825 23 6 9.2291 -2.2635 1.0545 24 6 8.2352 -1.2726 1.1364 25 6 6.9466 -1.5843 0.8382 26 6 6.6258 -2.9035 0.4505 27 7 5.4815 -3.4737 0.1129 28 6 3.1013 -3.9030 -0.8896 29 6 1.9013 -3.7211 0.0219 30 1 2.1453 -4.0781 1.0224 31 1 -0.4851 0.8401 -0.0004 32 1 -0.6811 -2.0125 -0.4420 33 1 -0.3984 -2.1630 1.3138 34 1 -0.4476 -4.5139 1.2429 35 1 -1.3765 -4.2451 -0.2694 36 1 1.3155 -6.1985 0.7338 37 1 0.3055 -6.6874 -0.6537 38 1 2.7591 -7.3296 -0.8832 39 1 2.1451 -6.3149 -2.2063 40 1 7.5369 -5.9646 -0.1568 41 1 9.6816 -4.2725 0.6231 42 1 10.2536 -2.0177 1.2916 43 1 8.4949 -0.2677 1.4352 44 1 6.1754 -0.8306 0.8983 45 1 2.8530 -3.5856 -1.9024 46 1 3.9474 -3.3282 -0.5131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042334931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:06 Heat of formation + Delta-G solvation = 90.153685 kcal Electronic energy + Delta-G solvation = -30374.751251 eV Core-core repulsion = 26459.466925 eV Total energy + Delta-G solvation = -3915.284325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.94372 -41.35330 -39.71099 -38.17850 -36.70806 -34.97226 -34.49715 -33.03565 -31.50027 -30.72384 -30.04267 -29.90158 -26.80168 -25.90047 -24.89740 -24.00077 -23.58433 -22.83977 -21.74172 -21.27945 -20.25802 -18.98018 -18.58894 -17.98071 -17.72925 -17.17446 -16.91701 -16.65501 -16.27013 -16.04549 -15.78864 -15.62446 -15.46852 -15.17090 -14.98943 -14.73042 -14.49830 -14.00477 -13.71334 -13.49913 -13.22888 -13.13021 -13.02060 -12.77500 -12.73233 -12.63887 -12.45412 -12.13527 -12.09908 -12.00518 -11.81231 -11.56243 -11.45501 -11.36835 -11.28707 -10.69272 -10.18492 -10.01329 -9.64529 -8.95209 -8.83804 -7.75927 -5.13723 -0.33609 0.19462 0.95415 1.44618 1.46102 1.48694 1.57830 1.96630 2.26165 2.54753 2.55234 2.96885 3.30360 3.39746 3.58226 3.73466 3.78578 3.93683 3.95671 4.03335 4.11292 4.18627 4.25217 4.32495 4.38105 4.41116 4.53510 4.62928 4.65895 4.77586 4.79266 4.86467 4.94458 4.96205 5.09510 5.10798 5.12984 5.20168 5.27426 5.38224 5.50836 5.52893 5.58524 5.68022 5.81461 5.83616 6.02336 6.23770 6.28845 6.62509 7.05445 7.14549 7.83772 8.52164 9.33162 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008592 B = 0.005360 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.248694 B = 5222.882360 C = 8260.730330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.970 3.030 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.262 1.262 7 C -0.221 4.221 8 H 0.081 0.919 9 N -0.608 5.608 10 C 0.175 3.825 11 C -0.122 4.122 12 C -0.104 4.104 13 H 0.071 0.929 14 C -0.104 4.104 15 C 0.107 3.893 16 N -0.590 5.590 17 C 0.597 3.403 18 O -0.567 6.567 19 C -0.029 4.029 20 C -0.007 4.007 21 N -0.364 5.364 22 C 0.045 3.955 23 C -0.127 4.127 24 C -0.075 4.075 25 C -0.118 4.118 26 C 0.214 3.786 27 N -0.497 5.497 28 C 0.076 3.924 29 C 0.159 3.841 30 H 0.003 0.997 31 H 0.244 0.756 32 H 0.036 0.964 33 H -0.008 1.008 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.223 0.777 41 H 0.207 0.793 42 H 0.200 0.800 43 H 0.175 0.825 44 H 0.140 0.860 45 H 0.046 0.954 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.242 -9.100 1.189 21.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.799 3.201 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.187 1.187 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.333 5.333 10 C 0.050 3.950 11 C -0.160 4.160 12 C -0.123 4.123 13 H 0.089 0.911 14 C -0.143 4.143 15 C -0.015 4.015 16 N -0.320 5.320 17 C 0.385 3.615 18 O -0.447 6.447 19 C -0.160 4.160 20 C -0.143 4.143 21 N -0.035 5.035 22 C -0.075 4.075 23 C -0.147 4.147 24 C -0.098 4.098 25 C -0.138 4.138 26 C -0.032 4.032 27 N -0.219 5.219 28 C -0.047 4.047 29 C 0.051 3.949 30 H 0.020 0.980 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.011 0.989 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.240 0.760 41 H 0.224 0.776 42 H 0.217 0.783 43 H 0.193 0.807 44 H 0.157 0.843 45 H 0.064 0.936 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 18.592 -9.196 1.081 20.770 hybrid contribution 0.155 1.001 0.027 1.013 sum 18.747 -8.195 1.108 20.490 Atomic orbital electron populations 1.70160 1.06253 1.24884 1.59002 1.25605 0.96525 1.00793 1.03291 0.85165 0.78234 0.79527 0.77202 1.21610 1.22313 1.18676 1.19362 0.90958 0.83421 1.41225 0.90160 1.44430 1.04359 1.00440 1.84082 1.21439 0.84076 0.92323 0.97137 1.22590 0.98227 0.95322 0.99843 1.22258 0.95530 0.95328 0.99224 0.91094 1.21730 0.97138 0.95158 1.00244 1.21789 0.87425 0.92106 1.00131 1.48136 1.08433 1.08122 1.67311 1.17196 0.81640 0.86196 0.76477 1.90705 1.80523 1.17549 1.55964 1.20652 0.93974 0.92061 1.09325 1.22822 0.92516 0.91231 1.07726 1.42962 1.09145 1.09160 1.42188 1.22584 0.83251 1.00680 1.00955 1.21471 1.02795 0.90369 1.00018 1.21582 0.90484 1.02247 0.95518 1.20586 0.99672 0.91153 1.02423 1.21478 0.83718 0.93283 1.04675 1.70353 1.23461 1.06679 1.21375 1.22840 1.03020 0.79871 0.99001 1.20975 0.93366 0.85830 0.94685 0.97958 0.94687 0.94559 0.98940 0.91453 0.89803 0.91984 0.87260 0.88775 0.90623 0.76021 0.77579 0.78305 0.80722 0.84260 0.93556 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.81 10.50 21.65 0.23 -58.58 16 2 C -0.07 -4.09 5.47 84.86 0.46 -3.63 16 3 Si 0.97 46.55 29.56 68.60 2.03 48.58 16 4 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.22 -12.76 9.84 84.03 0.83 -11.93 16 8 H 0.08 4.55 7.51 -2.91 -0.02 4.53 16 9 N -0.61 -32.92 3.35 -669.09 -2.24 -35.15 16 10 C 0.17 9.08 5.55 86.85 0.48 9.56 16 11 C -0.12 -4.71 6.54 31.62 0.21 -4.50 16 12 C -0.10 -3.86 2.60 -10.05 -0.03 -3.88 16 13 H 0.07 2.73 8.12 -2.39 -0.02 2.71 16 14 C -0.10 -3.04 5.72 30.56 0.17 -2.86 16 15 C 0.11 3.25 6.29 86.66 0.55 3.80 16 16 N -0.59 -21.72 3.00 -822.20 -2.47 -24.19 16 17 C 0.60 22.06 7.66 86.71 0.66 22.73 16 18 O -0.57 -21.42 16.26 -4.01 -0.07 -21.49 16 19 C -0.03 -1.00 6.68 40.80 0.27 -0.73 16 20 C -0.01 -0.18 11.47 83.63 0.96 0.78 16 21 N -0.36 -8.42 2.93 -351.25 -1.03 -9.45 16 22 C 0.04 0.55 10.93 83.16 0.91 1.46 16 23 C -0.13 -1.16 9.98 22.06 0.22 -0.94 16 24 C -0.07 -1.08 10.06 22.30 0.22 -0.86 16 25 C -0.12 -2.97 10.11 22.45 0.23 -2.74 16 26 C 0.21 6.56 7.79 134.21 1.05 7.60 16 27 N -0.50 -18.79 7.67 -183.50 -1.41 -20.20 16 28 C 0.08 3.21 5.62 85.71 0.48 3.69 16 29 C 0.16 7.21 2.79 45.63 0.13 7.34 16 30 H 0.00 0.15 7.93 -2.39 -0.02 0.13 16 31 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 32 H 0.04 2.09 6.79 -2.39 -0.02 2.08 16 33 H -0.01 -0.44 8.07 -2.39 -0.02 -0.46 16 34 H 0.07 2.43 8.12 -2.39 -0.02 2.41 16 35 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.06 1.88 7.98 -2.39 -0.02 1.86 16 37 H 0.11 2.43 8.14 -2.39 -0.02 2.42 16 38 H 0.09 2.74 7.02 -2.39 -0.02 2.72 16 39 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.22 4.16 8.06 -2.91 -0.02 4.13 16 41 H 0.21 0.70 8.06 -2.91 -0.02 0.68 16 42 H 0.20 -0.02 8.06 -2.91 -0.02 -0.05 16 43 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 44 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 45 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.15 6.73 3.43 -56.58 -0.19 6.53 16 Total: -1.00 -81.06 365.86 3.66 -77.40 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.81 Total: 18.22 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: 7.81 Total: 24.88 kcal Atomic # 7 Polarization: -140.67 SS G_CDS: -6.92 Total: -147.58 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.07 Total: -21.49 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -81.06 3.66 -77.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042334931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.550 kcal (2) G-P(sol) polarization free energy of solvation -81.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds