Wall clock time and date at job start Sat Apr 11 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99952 * 2 1 4 4 H 1.48497 * 109.47327 * 240.00570 * 3 2 1 5 5 H 1.48501 * 109.47084 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47351 * 120.00520 * 3 2 1 7 7 C 1.38809 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00221 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00044 * 359.97438 * 7 2 1 10 10 C 1.48384 * 126.56040 * 359.97438 * 9 7 2 11 11 C 1.55465 * 106.97742 * 185.52303 * 10 9 7 12 12 C 1.53433 * 101.67368 * 22.59817 * 11 10 9 13 13 H 1.08998 * 111.75311 * 78.23795 * 12 11 10 14 14 C 1.45024 * 126.56480 * 180.02562 * 9 7 2 15 15 H 1.08997 * 108.25948 * 263.91085 * 14 9 7 16 16 C 1.51083 * 119.18758 * 28.78183 * 14 9 7 17 17 C 1.53869 * 107.33423 * 183.89770 * 16 14 9 18 18 C 1.52707 * 111.52836 * 303.07653 * 17 16 14 19 19 N 1.45729 * 116.37364 * 207.28672 * 12 11 10 20 20 C 1.34775 * 122.22531 * 350.07558 * 19 12 11 21 21 O 1.21775 * 120.00373 * 0.40801 * 20 19 12 22 22 C 1.41820 * 119.99691 * 180.40903 * 20 19 12 23 23 C 1.38519 * 126.78593 * 28.37471 * 22 20 19 24 24 N 1.32329 * 108.21373 * 179.86395 * 23 22 20 25 25 C 1.33200 * 109.81200 * 0.41083 * 24 23 22 26 26 C 1.40663 * 131.81668 * 179.78339 * 25 24 23 27 27 C 1.36283 * 119.38427 * 179.97438 * 26 25 24 28 28 C 1.40178 * 119.60789 * 0.02562 * 27 26 25 29 29 C 1.35259 * 120.12758 * 359.97438 * 28 27 26 30 30 N 1.35961 * 120.63832 * 0.02562 * 29 28 27 31 31 H 0.97002 * 120.00237 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.96325 * 66.14203 * 10 9 7 33 33 H 1.08997 * 109.96220 * 304.90641 * 10 9 7 34 34 H 1.09000 * 110.99033 * 264.50381 * 11 10 9 35 35 H 1.08999 * 110.99268 * 140.69300 * 11 10 9 36 36 H 1.08994 * 109.88523 * 303.35883 * 16 14 9 37 37 H 1.09000 * 109.88053 * 64.36849 * 16 14 9 38 38 H 1.09005 * 109.07182 * 63.60714 * 17 16 14 39 39 H 1.09009 * 109.06780 * 182.61975 * 17 16 14 40 40 H 1.09005 * 109.15902 * 168.93856 * 18 17 16 41 41 H 1.08998 * 109.16423 * 288.17127 * 18 17 16 42 42 H 1.08000 * 125.89328 * 359.97438 * 23 22 20 43 43 H 1.08001 * 120.30288 * 359.97438 * 26 25 24 44 44 H 1.07999 * 120.19541 * 179.97438 * 27 26 25 45 45 H 1.07997 * 119.93772 * 180.02562 * 28 27 26 46 46 H 1.07997 * 119.68380 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1485 -2.5576 0.0005 11 6 -0.4302 -4.0799 0.1432 12 6 0.8719 -4.5778 0.7842 13 1 0.9051 -4.3610 1.8519 14 6 1.9025 -3.7186 -0.0005 15 1 1.9376 -4.0756 -1.0298 16 6 3.2562 -3.9348 0.6345 17 6 3.6453 -5.4042 0.3956 18 6 2.5922 -6.3602 0.9516 19 7 1.2349 -5.9641 0.5195 20 6 0.3888 -6.8273 -0.0767 21 8 -0.7186 -6.4553 -0.4203 22 6 0.7882 -8.1690 -0.3038 23 6 1.6958 -8.9020 0.4430 24 7 1.7909 -10.1093 -0.0903 25 6 0.9952 -10.1965 -1.1550 26 6 0.7436 -11.2485 -2.0542 27 6 -0.1381 -11.0585 -3.0758 28 6 -0.7796 -9.8200 -3.2157 29 6 -0.5243 -8.8205 -2.3408 30 7 0.3539 -9.0018 -1.3188 31 1 -0.4850 0.8400 0.0004 32 1 -0.5663 -2.1881 -0.9360 33 1 -0.5845 -2.0181 0.8413 34 1 -0.5864 -4.5411 -0.8320 35 1 -1.2819 -4.2596 0.7992 36 1 3.9919 -3.2766 0.1724 37 1 3.2000 -3.7343 1.7044 38 1 3.7512 -5.5750 -0.6757 39 1 4.5993 -5.6039 0.8839 40 1 2.8006 -7.3688 0.5945 41 1 2.6386 -6.3497 2.0405 42 1 2.2319 -8.5496 1.3118 43 1 1.2445 -12.1980 -1.9360 44 1 -0.3408 -11.8571 -3.7740 45 1 -1.4796 -9.6637 -4.0231 46 1 -1.0229 -7.8694 -2.4550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049560621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:58 Heat of formation + Delta-G solvation = 115.970888 kcal Electronic energy + Delta-G solvation = -30282.935934 eV Core-core repulsion = 26368.771126 eV Total energy + Delta-G solvation = -3914.164807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.17439 -40.29395 -37.89093 -37.57732 -35.49806 -33.88922 -32.64684 -32.34983 -30.71160 -29.78711 -28.63853 -28.12329 -25.29761 -24.59103 -24.09858 -23.11901 -22.51576 -21.40592 -21.01248 -19.79516 -19.36651 -17.42827 -17.19088 -16.94175 -16.48129 -16.37721 -15.72463 -15.45392 -15.00762 -14.90707 -14.64491 -14.47252 -14.29637 -13.73590 -13.52375 -13.33802 -12.93769 -12.71446 -12.48488 -12.33267 -12.19841 -12.15310 -11.85002 -11.53967 -11.29846 -11.07517 -10.85861 -10.74165 -10.59364 -10.49035 -10.36958 -10.12136 -10.02082 -9.86253 -9.61327 -9.24139 -9.06733 -8.59283 -8.34854 -8.05576 -6.83104 -5.69887 -3.04258 0.43013 0.62956 2.02459 2.21525 3.16180 3.21047 3.33261 3.40718 3.45059 3.46410 3.86441 4.19816 4.44833 4.49650 4.53036 4.67914 4.76499 4.86581 4.97913 5.10004 5.18067 5.27620 5.35712 5.42933 5.46738 5.59799 5.64024 5.65882 5.76888 5.79051 5.84594 5.98956 6.06616 6.14537 6.16935 6.25380 6.29193 6.39138 6.54509 6.68336 6.71432 6.76767 6.88064 7.15703 7.44982 7.55917 7.60447 7.66736 7.83608 8.24697 8.29773 9.19423 9.83263 10.51380 11.42079 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021728 B = 0.002974 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.354327 B = 9412.038167 C =10083.773016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.129 4.129 12 C 0.119 3.881 13 H 0.083 0.917 14 C 0.159 3.841 15 H 0.016 0.984 16 C -0.116 4.116 17 C -0.128 4.128 18 C 0.086 3.914 19 N -0.584 5.584 20 C 0.595 3.405 21 O -0.541 6.541 22 C -0.128 4.128 23 C 0.088 3.912 24 N -0.496 5.496 25 C 0.237 3.763 26 C -0.091 4.091 27 C -0.089 4.089 28 C -0.147 4.147 29 C 0.077 3.923 30 N -0.323 5.323 31 H 0.253 0.747 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.200 0.800 43 H 0.154 0.846 44 H 0.146 0.854 45 H 0.156 0.844 46 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.318 -22.551 -2.924 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.167 4.167 12 C 0.015 3.985 13 H 0.101 0.899 14 C 0.050 3.950 15 H 0.034 0.966 16 C -0.155 4.155 17 C -0.167 4.167 18 C -0.036 4.036 19 N -0.316 5.316 20 C 0.384 3.616 21 O -0.420 6.420 22 C -0.243 4.243 23 C -0.071 4.071 24 N -0.215 5.215 25 C -0.004 4.004 26 C -0.111 4.111 27 C -0.113 4.113 28 C -0.167 4.167 29 C -0.047 4.047 30 N 0.007 4.993 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.216 0.784 43 H 0.172 0.828 44 H 0.164 0.836 45 H 0.173 0.827 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.131 -22.653 -2.823 22.927 hybrid contribution 0.012 1.617 -0.231 1.633 sum 2.143 -21.036 -3.054 21.364 Atomic orbital electron populations 1.69936 1.04885 1.25186 1.56717 1.24801 0.95669 0.97618 1.02233 0.86226 0.78472 0.83353 0.77854 1.21227 1.21619 1.21170 1.18942 0.90310 0.82208 1.44071 0.90399 1.44085 1.01784 0.99302 1.86538 1.21746 0.83643 0.88724 1.01102 1.22968 0.94539 0.97875 1.01357 1.22466 0.98909 0.77745 0.99408 0.89895 1.20751 0.91427 0.87176 0.95644 0.96625 1.21439 0.98475 0.94208 1.01342 1.21889 0.97645 0.95591 1.01560 1.22390 0.81617 0.99872 0.99757 1.47699 1.13942 1.11120 1.58866 1.15393 0.84624 0.82705 0.78839 1.90838 1.20478 1.78142 1.52563 1.20045 1.10192 0.95750 0.98320 1.23489 0.94920 0.89033 0.99608 1.70520 1.22344 1.20535 1.08091 1.21093 0.95390 0.86608 0.97262 1.20325 1.00015 0.97418 0.93309 1.21156 0.95155 0.97571 0.97408 1.20948 1.02711 0.92682 1.00341 1.22014 0.92693 1.02491 0.87521 1.42428 1.26808 1.11827 1.18187 0.93667 0.94290 0.92522 0.90076 0.92017 0.91429 0.91636 0.91917 0.90688 0.88674 0.90916 0.78375 0.82802 0.83629 0.82683 0.80870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.16 10.46 55.49 0.58 -26.58 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.23 -6.24 9.94 -15.06 -0.15 -6.39 16 8 H 0.08 2.04 7.31 -52.49 -0.38 1.66 16 9 N -0.59 -15.09 3.35 -163.32 -0.55 -15.64 16 10 C 0.17 4.33 5.47 -1.69 -0.01 4.32 16 11 C -0.13 -2.71 5.01 -25.20 -0.13 -2.84 16 12 C 0.12 2.24 3.32 -66.82 -0.22 2.01 16 13 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 14 C 0.16 3.30 2.57 -68.39 -0.18 3.13 16 15 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 16 C -0.12 -1.96 5.45 -27.24 -0.15 -2.11 16 17 C -0.13 -1.63 5.93 -26.43 -0.16 -1.78 16 18 C 0.09 1.03 5.33 -3.45 -0.02 1.01 16 19 N -0.58 -9.21 2.91 -167.33 -0.49 -9.70 16 20 C 0.60 9.86 7.42 -14.89 -0.11 9.75 16 21 O -0.54 -10.39 12.77 5.12 0.07 -10.32 16 22 C -0.13 -1.84 6.43 -83.48 -0.54 -2.38 16 23 C 0.09 1.10 9.54 -17.23 -0.16 0.93 16 24 N -0.50 -6.55 11.25 -12.27 -0.14 -6.68 16 25 C 0.24 2.92 7.77 -156.06 -1.21 1.71 16 26 C -0.09 -0.78 10.10 -39.37 -0.40 -1.18 16 27 C -0.09 -0.59 10.07 -39.56 -0.40 -0.99 16 28 C -0.15 -1.12 10.00 -39.91 -0.40 -1.52 16 29 C 0.08 0.86 10.57 -16.78 -0.18 0.68 16 30 N -0.32 -4.28 2.96 -60.14 -0.18 -4.46 16 31 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.04 1.08 7.81 -51.93 -0.41 0.67 16 33 H 0.06 1.55 7.19 -51.93 -0.37 1.17 16 34 H 0.08 1.78 6.19 -51.93 -0.32 1.46 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 37 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.10 0.98 3.74 -51.93 -0.19 0.79 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.20 1.86 5.92 -52.49 -0.31 1.55 16 43 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 45 H 0.16 0.72 8.06 -52.49 -0.42 0.29 16 46 H 0.17 2.02 7.27 -52.49 -0.38 1.64 16 LS Contribution 357.46 15.07 5.39 5.39 Total: -1.00 -34.24 357.46 -10.97 -45.20 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.13 Total: 1.72 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -4.50 Total: 4.06 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: -0.77 Total: -63.07 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.07 Total: -10.32 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.24 -10.97 -45.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049560621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.174 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds