Wall clock time and date at job start Sat Apr 11 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99768 * 2 1 4 4 H 1.48501 * 109.47714 * 240.00068 * 3 2 1 5 5 H 1.48508 * 109.47398 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47391 * 120.00137 * 3 2 1 7 7 C 1.38807 * 120.00465 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00559 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99688 * 0.02562 * 7 2 1 10 10 C 1.48379 * 126.56131 * 359.95565 * 9 7 2 11 11 C 1.55471 * 106.97345 * 174.50949 * 10 9 7 12 12 C 1.53521 * 101.75676 * 337.20855 * 11 10 9 13 13 H 1.09005 * 112.11804 * 281.76514 * 12 11 10 14 14 C 1.45023 * 126.55688 * 179.97438 * 9 7 2 15 15 H 1.08998 * 108.70608 * 96.47549 * 14 9 7 16 16 C 1.51077 * 119.20128 * 331.18412 * 14 9 7 17 17 C 1.53870 * 107.34657 * 176.11506 * 16 14 9 18 18 C 1.52715 * 111.52146 * 56.93210 * 17 16 14 19 19 N 1.45715 * 116.32170 * 152.41928 * 12 11 10 20 20 C 1.34778 * 122.22731 * 10.39736 * 19 12 11 21 21 O 1.21713 * 119.99839 * 4.50546 * 20 19 12 22 22 C 1.46564 * 119.99771 * 184.49679 * 20 19 12 23 23 C 1.40555 * 126.58714 * 312.52236 * 22 20 19 24 24 N 1.30745 * 108.74687 * 179.47406 * 23 22 20 25 25 N 1.40016 * 109.60068 * 0.60268 * 24 23 22 26 26 C 1.36244 * 132.01238 * 179.30449 * 25 24 23 27 27 C 1.35187 * 120.70929 * 180.02562 * 26 25 24 28 28 C 1.40160 * 120.31623 * 359.97438 * 27 26 25 29 29 C 1.36448 * 119.41026 * 0.02562 * 28 27 26 30 30 C 1.36581 * 107.90768 * 359.54521 * 25 24 23 31 31 H 0.96993 * 120.00463 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.96363 * 293.89078 * 10 9 7 33 33 H 1.08998 * 109.96010 * 55.09744 * 10 9 7 34 34 H 1.09010 * 110.98400 * 95.49666 * 11 10 9 35 35 H 1.08995 * 110.98930 * 219.26148 * 11 10 9 36 36 H 1.08999 * 109.88043 * 56.65720 * 16 14 9 37 37 H 1.08999 * 109.88407 * 295.57853 * 16 14 9 38 38 H 1.09002 * 109.07040 * 296.40339 * 17 16 14 39 39 H 1.09003 * 109.01574 * 177.42550 * 17 16 14 40 40 H 1.09001 * 109.15961 * 191.05495 * 18 17 16 41 41 H 1.09003 * 109.11886 * 71.84279 * 18 17 16 42 42 H 1.08004 * 125.62248 * 359.96155 * 23 22 20 43 43 H 1.07998 * 119.64596 * 359.97438 * 26 25 24 44 44 H 1.07995 * 119.83985 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.29591 * 179.97438 * 28 27 26 46 46 H 1.08000 * 120.37426 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1484 -2.5576 0.0009 11 6 -0.4302 -4.0799 -0.1415 12 6 0.8692 -4.5793 -0.7889 13 1 0.9042 -4.3654 -1.8571 14 6 1.9027 -3.7185 0.0005 15 1 1.9349 -4.0856 1.0264 16 6 3.2560 -3.9350 -0.6351 17 6 3.6452 -5.4044 -0.3964 18 6 2.5918 -6.3604 -0.9519 19 7 1.2345 -5.9641 -0.5197 20 6 0.3890 -6.8274 0.0771 21 8 -0.7493 -6.4834 0.3364 22 6 0.8403 -8.1806 0.4136 23 6 1.5349 -9.0658 -0.4287 24 7 1.7730 -10.1710 0.2280 25 7 1.2396 -10.0745 1.5190 26 6 1.2146 -10.9495 2.5630 27 6 0.6248 -10.6129 3.7319 28 6 0.0288 -9.3538 3.8868 29 6 0.0487 -8.4706 2.8470 30 6 0.6610 -8.8436 1.6434 31 1 -0.4850 0.8399 -0.0004 32 1 -0.5653 -2.1881 0.9378 33 1 -0.5853 -2.0176 -0.8391 34 1 -0.5854 -4.5412 0.8339 35 1 -1.2830 -4.2596 -0.7961 36 1 3.9920 -3.2769 -0.1733 37 1 3.1991 -3.7358 -1.7052 38 1 3.7514 -5.5752 0.6750 39 1 4.5993 -5.6030 -0.8847 40 1 2.8003 -7.3690 -0.5952 41 1 2.6386 -6.3494 -2.0409 42 1 1.8308 -8.8631 -1.4474 43 1 1.6702 -11.9228 2.4554 44 1 0.6135 -11.3172 4.5505 45 1 -0.4427 -9.0854 4.8207 46 1 -0.4061 -7.4964 2.9492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049792021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:38 Heat of formation + Delta-G solvation = 119.537572 kcal Electronic energy + Delta-G solvation = -30195.592274 eV Core-core repulsion = 26281.582129 eV Total energy + Delta-G solvation = -3914.010144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.36793 -40.05760 -37.75781 -37.27338 -35.31799 -33.21563 -32.52695 -32.08167 -31.08407 -29.49595 -28.48222 -28.04915 -24.90915 -24.43739 -24.15041 -23.11263 -22.26407 -21.36648 -20.73799 -19.63050 -18.97525 -17.57522 -16.98301 -16.59065 -16.40060 -16.03298 -15.67524 -15.42569 -14.94163 -14.89767 -14.52510 -14.17466 -14.13062 -13.67817 -13.55384 -13.18501 -12.80704 -12.51244 -12.38689 -12.23764 -12.17363 -12.11661 -11.77055 -11.49540 -11.12778 -11.06094 -10.80105 -10.75787 -10.59272 -10.44012 -10.36064 -10.07788 -9.92832 -9.79333 -9.68000 -9.56585 -9.03216 -8.55185 -8.14027 -7.81698 -6.77987 -5.65772 -2.99881 0.40948 0.75538 1.89732 2.14149 2.93199 3.14638 3.43119 3.46889 3.48403 3.49385 3.95647 4.28846 4.41032 4.53332 4.55697 4.78724 4.86644 4.97626 5.08067 5.14377 5.18360 5.33239 5.40256 5.42738 5.50825 5.65142 5.69322 5.75747 5.84913 5.90597 5.91906 6.04721 6.07381 6.11107 6.19216 6.33669 6.36581 6.46196 6.53031 6.62823 6.77743 6.87567 6.95781 7.21515 7.24955 7.62726 7.70299 7.81905 7.89555 8.29856 8.56827 9.23866 9.87758 10.56479 11.46185 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019845 B = 0.003001 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.576467 B = 9328.184549 C = 9778.145519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.126 4.126 12 C 0.117 3.883 13 H 0.080 0.920 14 C 0.159 3.841 15 H 0.017 0.983 16 C -0.115 4.115 17 C -0.128 4.128 18 C 0.106 3.894 19 N -0.593 5.593 20 C 0.599 3.401 21 O -0.534 6.534 22 C -0.294 4.294 23 C 0.112 3.888 24 N -0.321 5.321 25 N -0.268 5.268 26 C 0.107 3.893 27 C -0.159 4.159 28 C -0.079 4.079 29 C -0.103 4.103 30 C 0.152 3.848 31 H 0.253 0.747 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.199 0.801 43 H 0.170 0.830 44 H 0.157 0.843 45 H 0.145 0.855 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.073 -23.069 4.088 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.164 4.164 12 C 0.013 3.987 13 H 0.098 0.902 14 C 0.050 3.950 15 H 0.034 0.966 16 C -0.154 4.154 17 C -0.167 4.167 18 C -0.017 4.017 19 N -0.325 5.325 20 C 0.387 3.613 21 O -0.412 6.412 22 C -0.309 4.309 23 C -0.067 4.067 24 N -0.143 5.143 25 N -0.032 5.032 26 C -0.019 4.019 27 C -0.181 4.181 28 C -0.102 4.102 29 C -0.123 4.123 30 C 0.031 3.969 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.215 0.785 43 H 0.187 0.813 44 H 0.174 0.826 45 H 0.163 0.837 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.988 -23.809 4.029 24.475 hybrid contribution 0.268 1.616 -0.028 1.639 sum 4.256 -22.193 4.001 22.949 Atomic orbital electron populations 1.69936 1.04858 1.25126 1.56809 1.24794 0.95657 0.97569 1.02336 0.86238 0.78466 0.83442 0.77822 1.21221 1.21642 1.21258 1.18943 0.90292 0.82262 1.43926 0.90451 1.44077 1.01822 0.99317 1.86498 1.21746 0.83594 0.88837 1.01044 1.22912 0.94722 0.97689 1.01088 1.22519 0.98700 0.78373 0.99105 0.90187 1.20841 0.91437 0.87120 0.95641 0.96606 1.21425 0.98523 0.94166 1.01252 1.21887 0.97642 0.95711 1.01477 1.21848 0.81849 0.98798 0.99167 1.47851 1.14109 1.11243 1.59338 1.16857 0.84431 0.82665 0.77381 1.90807 1.18364 1.77634 1.54353 1.19828 1.17616 0.98815 0.94645 1.24044 0.93261 0.89613 0.99756 1.77551 1.25399 1.23517 0.87794 1.46001 1.35804 1.10861 1.10568 1.21537 1.00200 0.95219 0.84950 1.20915 1.01519 0.98712 0.96956 1.21296 0.96980 0.92725 0.99244 1.20793 0.99490 1.02075 0.89939 1.19256 0.96130 0.85820 0.95662 0.93701 0.94345 0.92551 0.90433 0.91971 0.91571 0.91748 0.92005 0.91044 0.90114 0.91518 0.78485 0.81258 0.82570 0.83699 0.82793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.35 10.46 55.49 0.58 -26.77 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.23 -6.26 9.94 -15.06 -0.15 -6.41 16 8 H 0.08 2.05 7.31 -52.49 -0.38 1.67 16 9 N -0.59 -15.28 3.35 -163.00 -0.55 -15.82 16 10 C 0.17 4.38 5.47 -1.69 -0.01 4.37 16 11 C -0.13 -2.70 4.93 -25.15 -0.12 -2.82 16 12 C 0.12 2.26 3.36 -66.51 -0.22 2.04 16 13 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 14 C 0.16 3.35 2.58 -68.11 -0.18 3.17 16 15 H 0.02 0.38 8.04 -51.93 -0.42 -0.04 16 16 C -0.12 -1.99 5.45 -27.25 -0.15 -2.14 16 17 C -0.13 -1.70 5.92 -26.42 -0.16 -1.86 16 18 C 0.11 1.33 5.83 -3.44 -0.02 1.31 16 19 N -0.59 -9.63 2.90 -165.22 -0.48 -10.11 16 20 C 0.60 10.17 7.48 -12.90 -0.10 10.07 16 21 O -0.53 -10.71 14.08 5.18 0.07 -10.64 16 22 C -0.29 -4.21 5.31 -104.68 -0.56 -4.76 16 23 C 0.11 1.34 9.62 -17.14 -0.16 1.17 16 24 N -0.32 -3.98 12.57 30.75 0.39 -3.60 16 25 N -0.27 -3.13 3.86 -10.54 -0.04 -3.17 16 26 C 0.11 0.84 11.17 -16.68 -0.19 0.65 16 27 C -0.16 -0.98 9.98 -39.95 -0.40 -1.38 16 28 C -0.08 -0.61 10.09 -39.51 -0.40 -1.01 16 29 C -0.10 -1.18 10.07 -39.53 -0.40 -1.57 16 30 C 0.15 2.01 6.79 -84.06 -0.57 1.44 16 31 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.04 1.07 7.81 -51.93 -0.41 0.66 16 33 H 0.06 1.56 7.18 -51.93 -0.37 1.19 16 34 H 0.08 1.73 6.36 -51.92 -0.33 1.40 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 37 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.88 4.60 -51.93 -0.24 0.64 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.20 1.72 7.43 -52.48 -0.39 1.33 16 43 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.16 0.40 8.06 -52.49 -0.42 -0.03 16 45 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 46 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -34.93 363.40 -9.75 -44.67 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.30 Total: 0.83 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -3.87 Total: 1.97 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.10 Total: -59.47 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.07 Total: -10.64 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.93 -9.75 -44.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049792021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.210 kcal (2) G-P(sol) polarization free energy of solvation -34.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds