Wall clock time and date at job start Sat Apr 11 2020 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99768 * 2 1 4 4 H 1.48501 * 109.47714 * 240.00068 * 3 2 1 5 5 H 1.48508 * 109.47398 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47391 * 120.00137 * 3 2 1 7 7 C 1.38807 * 120.00465 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00559 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99688 * 0.02562 * 7 2 1 10 10 C 1.48379 * 126.56131 * 359.95565 * 9 7 2 11 11 C 1.55471 * 106.97345 * 174.50949 * 10 9 7 12 12 C 1.53521 * 101.75676 * 337.20855 * 11 10 9 13 13 H 1.09005 * 112.11804 * 281.76514 * 12 11 10 14 14 C 1.45023 * 126.55688 * 179.97438 * 9 7 2 15 15 H 1.08998 * 108.70608 * 96.47549 * 14 9 7 16 16 C 1.51077 * 119.20128 * 331.18412 * 14 9 7 17 17 C 1.53870 * 107.34657 * 176.11506 * 16 14 9 18 18 C 1.52715 * 111.52146 * 56.93210 * 17 16 14 19 19 N 1.45715 * 116.32170 * 152.41928 * 12 11 10 20 20 C 1.34778 * 122.22731 * 10.39736 * 19 12 11 21 21 O 1.21713 * 119.99839 * 4.50546 * 20 19 12 22 22 C 1.46564 * 119.99771 * 184.49679 * 20 19 12 23 23 C 1.40555 * 126.58714 * 312.52236 * 22 20 19 24 24 N 1.30745 * 108.74687 * 179.47406 * 23 22 20 25 25 N 1.40016 * 109.60068 * 0.60268 * 24 23 22 26 26 C 1.36244 * 132.01238 * 179.30449 * 25 24 23 27 27 C 1.35187 * 120.70929 * 180.02562 * 26 25 24 28 28 C 1.40160 * 120.31623 * 359.97438 * 27 26 25 29 29 C 1.36448 * 119.41026 * 0.02562 * 28 27 26 30 30 C 1.36581 * 107.90768 * 359.54521 * 25 24 23 31 31 H 0.96993 * 120.00463 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.96363 * 293.89078 * 10 9 7 33 33 H 1.08998 * 109.96010 * 55.09744 * 10 9 7 34 34 H 1.09010 * 110.98400 * 95.49666 * 11 10 9 35 35 H 1.08995 * 110.98930 * 219.26148 * 11 10 9 36 36 H 1.08999 * 109.88043 * 56.65720 * 16 14 9 37 37 H 1.08999 * 109.88407 * 295.57853 * 16 14 9 38 38 H 1.09002 * 109.07040 * 296.40339 * 17 16 14 39 39 H 1.09003 * 109.01574 * 177.42550 * 17 16 14 40 40 H 1.09001 * 109.15961 * 191.05495 * 18 17 16 41 41 H 1.09003 * 109.11886 * 71.84279 * 18 17 16 42 42 H 1.08004 * 125.62248 * 359.96155 * 23 22 20 43 43 H 1.07998 * 119.64596 * 359.97438 * 26 25 24 44 44 H 1.07995 * 119.83985 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.29591 * 179.97438 * 28 27 26 46 46 H 1.08000 * 120.37426 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1484 -2.5576 0.0009 11 6 -0.4302 -4.0799 -0.1415 12 6 0.8692 -4.5793 -0.7889 13 1 0.9042 -4.3654 -1.8571 14 6 1.9027 -3.7185 0.0005 15 1 1.9349 -4.0856 1.0264 16 6 3.2560 -3.9350 -0.6351 17 6 3.6452 -5.4044 -0.3964 18 6 2.5918 -6.3604 -0.9519 19 7 1.2345 -5.9641 -0.5197 20 6 0.3890 -6.8274 0.0771 21 8 -0.7493 -6.4834 0.3364 22 6 0.8403 -8.1806 0.4136 23 6 1.5349 -9.0658 -0.4287 24 7 1.7730 -10.1710 0.2280 25 7 1.2396 -10.0745 1.5190 26 6 1.2146 -10.9495 2.5630 27 6 0.6248 -10.6129 3.7319 28 6 0.0288 -9.3538 3.8868 29 6 0.0487 -8.4706 2.8470 30 6 0.6610 -8.8436 1.6434 31 1 -0.4850 0.8399 -0.0004 32 1 -0.5653 -2.1881 0.9378 33 1 -0.5853 -2.0176 -0.8391 34 1 -0.5854 -4.5412 0.8339 35 1 -1.2830 -4.2596 -0.7961 36 1 3.9920 -3.2769 -0.1733 37 1 3.1991 -3.7358 -1.7052 38 1 3.7514 -5.5752 0.6750 39 1 4.5993 -5.6030 -0.8847 40 1 2.8003 -7.3690 -0.5952 41 1 2.6386 -6.3494 -2.0409 42 1 1.8308 -8.8631 -1.4474 43 1 1.6702 -11.9228 2.4554 44 1 0.6135 -11.3172 4.5505 45 1 -0.4427 -9.0854 4.8207 46 1 -0.4061 -7.4964 2.9492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049792021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:37 Heat of formation + Delta-G solvation = 97.297465 kcal Electronic energy + Delta-G solvation = -30196.556677 eV Core-core repulsion = 26281.582129 eV Total energy + Delta-G solvation = -3914.974548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.20144 -41.47238 -39.11429 -38.19711 -36.87046 -34.37491 -33.96383 -33.69611 -31.84923 -31.07986 -29.89965 -29.41161 -26.47493 -26.14336 -24.88872 -24.13691 -23.27811 -22.71673 -22.32273 -21.36156 -20.19066 -18.79452 -18.19356 -17.75613 -17.35099 -17.12189 -16.93104 -16.54034 -16.48100 -16.18083 -15.73571 -15.64238 -15.40610 -15.19970 -14.94107 -14.35752 -14.15454 -14.01883 -13.86517 -13.39090 -13.15660 -13.15354 -12.99089 -12.95239 -12.77799 -12.67096 -12.25954 -12.12925 -11.97916 -11.90366 -11.77333 -11.69296 -11.58500 -11.50782 -11.40969 -10.74753 -10.45146 -10.44280 -9.53026 -8.90452 -8.67479 -7.82742 -5.19972 -0.32237 0.00874 1.14242 1.18567 1.46259 1.50238 1.56377 1.84716 2.15099 2.44615 2.51771 3.15771 3.35399 3.40162 3.54465 3.73778 3.86966 3.89462 3.97518 4.01186 4.08802 4.10648 4.16797 4.27120 4.33848 4.35887 4.51267 4.56854 4.59765 4.66626 4.70987 4.80332 4.93327 5.02921 5.04459 5.11131 5.14480 5.22701 5.26270 5.28301 5.40302 5.44700 5.49222 5.59859 5.64682 5.74411 5.78417 6.18849 6.38656 6.56216 7.06301 7.27882 7.76423 8.46936 9.28953 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019845 B = 0.003001 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.576467 B = 9328.184549 C = 9778.145519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.069 4.069 3 Si 0.980 3.020 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.278 1.278 7 C -0.235 4.235 8 H 0.089 0.911 9 N -0.611 5.611 10 C 0.184 3.816 11 C -0.108 4.108 12 C 0.133 3.867 13 H 0.085 0.915 14 C 0.154 3.846 15 H -0.006 1.006 16 C -0.110 4.110 17 C -0.118 4.118 18 C 0.103 3.897 19 N -0.594 5.594 20 C 0.598 3.402 21 O -0.579 6.579 22 C -0.336 4.336 23 C 0.124 3.876 24 N -0.337 5.337 25 N -0.271 5.271 26 C 0.098 3.902 27 C -0.145 4.145 28 C -0.050 4.050 29 C -0.151 4.151 30 C 0.141 3.859 31 H 0.246 0.754 32 H -0.001 1.001 33 H 0.027 0.973 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.226 0.774 43 H 0.205 0.795 44 H 0.206 0.794 45 H 0.176 0.824 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.727 -26.497 4.550 27.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.204 1.204 7 C -0.363 4.363 8 H 0.107 0.893 9 N -0.336 5.336 10 C 0.059 3.941 11 C -0.147 4.147 12 C 0.027 3.973 13 H 0.102 0.898 14 C 0.046 3.954 15 H 0.012 0.988 16 C -0.148 4.148 17 C -0.157 4.157 18 C -0.018 4.018 19 N -0.325 5.325 20 C 0.389 3.611 21 O -0.460 6.460 22 C -0.351 4.351 23 C -0.055 4.055 24 N -0.158 5.158 25 N -0.035 5.035 26 C -0.027 4.027 27 C -0.165 4.165 28 C -0.073 4.073 29 C -0.171 4.171 30 C 0.020 3.980 31 H 0.056 0.944 32 H 0.017 0.983 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.130 0.870 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.242 0.758 43 H 0.222 0.778 44 H 0.223 0.777 45 H 0.193 0.807 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.708 -27.297 4.483 28.465 hybrid contribution -0.602 2.512 0.062 2.584 sum 6.106 -24.786 4.544 25.928 Atomic orbital electron populations 1.70174 1.06518 1.25370 1.58328 1.25702 0.96540 1.01184 1.02729 0.85129 0.77073 0.78650 0.78335 1.19815 1.22339 1.20390 1.19387 0.91026 0.83141 1.42777 0.89336 1.44334 1.02028 1.00848 1.86366 1.21435 0.83919 0.91025 0.97732 1.22630 0.96400 0.94790 1.00883 1.22130 0.96154 0.80402 0.98587 0.89751 1.20992 0.94336 0.84936 0.95116 0.98827 1.21396 0.95472 0.97133 1.00816 1.21859 0.99590 0.92606 1.01628 1.22163 0.79266 0.99581 1.00839 1.47897 1.15713 1.09552 1.59355 1.17280 0.83825 0.83743 0.76286 1.90764 1.20371 1.78832 1.56053 1.19554 1.21094 0.97997 0.96408 1.24385 0.91959 0.88660 1.00459 1.77486 1.26253 1.23725 0.88320 1.46259 1.35359 1.10753 1.11097 1.22451 0.99897 0.95956 0.84384 1.21525 0.99093 0.98357 0.97543 1.21797 0.94294 0.92360 0.98877 1.20783 1.02380 1.02631 0.91284 1.19433 0.96110 0.86564 0.95868 0.94446 0.98255 0.95431 0.91627 0.91758 0.92503 0.91299 0.92812 0.87049 0.87861 0.88743 0.75826 0.77845 0.77746 0.80689 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.72 10.46 21.65 0.23 -59.49 16 2 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 3 Si 0.98 46.58 29.55 68.60 2.03 48.60 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.23 -13.36 9.94 84.03 0.84 -12.53 16 8 H 0.09 4.72 7.31 -2.91 -0.02 4.70 16 9 N -0.61 -32.99 3.35 -669.62 -2.24 -35.24 16 10 C 0.18 10.09 5.47 86.87 0.48 10.56 16 11 C -0.11 -5.00 4.93 31.62 0.16 -4.84 16 12 C 0.13 5.26 3.36 46.34 0.16 5.42 16 13 H 0.08 3.30 8.14 -2.38 -0.02 3.28 16 14 C 0.15 6.70 2.58 45.66 0.12 6.82 16 15 H -0.01 -0.27 8.04 -2.39 -0.02 -0.29 16 16 C -0.11 -3.70 5.45 30.26 0.16 -3.54 16 17 C -0.12 -2.84 5.92 30.79 0.18 -2.65 16 18 C 0.10 2.32 5.83 86.03 0.50 2.82 16 19 N -0.59 -19.27 2.90 -794.85 -2.31 -21.57 16 20 C 0.60 20.97 7.48 86.41 0.65 21.62 16 21 O -0.58 -24.76 14.08 -4.39 -0.06 -24.82 16 22 C -0.34 -9.60 5.31 -19.90 -0.11 -9.71 16 23 C 0.12 2.76 9.62 85.42 0.82 3.58 16 24 N -0.34 -7.64 12.57 -56.61 -0.71 -8.35 16 25 N -0.27 -5.77 3.86 -187.27 -0.72 -6.50 16 26 C 0.10 1.17 11.17 83.30 0.93 2.10 16 27 C -0.14 -1.11 9.98 22.03 0.22 -0.89 16 28 C -0.05 -0.64 10.09 22.32 0.23 -0.42 16 29 C -0.15 -3.47 10.07 22.30 0.22 -3.24 16 30 C 0.14 3.71 6.79 39.50 0.27 3.98 16 31 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.00 -0.05 7.81 -2.39 -0.02 -0.07 16 33 H 0.03 1.64 7.18 -2.39 -0.02 1.63 16 34 H 0.07 3.18 6.36 -2.38 -0.02 3.17 16 35 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.06 2.01 7.70 -2.39 -0.02 1.99 16 37 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 38 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.10 1.95 4.60 -2.39 -0.01 1.94 16 41 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.23 3.30 7.43 -2.91 -0.02 3.28 16 43 H 0.20 0.93 8.06 -2.91 -0.02 0.90 16 44 H 0.21 -0.35 8.06 -2.91 -0.02 -0.38 16 45 H 0.18 1.13 8.06 -2.91 -0.02 1.10 16 46 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -83.55 363.40 3.49 -80.06 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.00 Total: 11.79 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 6.29 Total: 15.52 kcal Atomic # 7 Polarization: -125.39 SS G_CDS: -5.76 Total: -131.15 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.06 Total: -24.82 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -83.55 3.49 -80.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049792021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.355 kcal (2) G-P(sol) polarization free energy of solvation -83.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds