Wall clock time and date at job start Sat Apr 11 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.85556 * 336.19726 * 10 9 7 12 12 C 1.53788 * 113.61090 * 107.50380 * 10 9 7 13 13 C 1.53788 * 87.08004 * 139.98063 * 12 10 9 14 14 H 1.09000 * 113.69114 * 89.12562 * 13 12 10 15 15 C 1.52996 * 113.61144 * 220.02059 * 13 12 10 16 16 N 1.46500 * 109.47030 * 272.49064 * 15 13 12 17 17 C 1.34777 * 120.00135 * 179.97438 * 16 15 13 18 18 O 1.21551 * 119.99833 * 0.02562 * 17 16 15 19 19 C 1.47852 * 120.00047 * 180.02562 * 17 16 15 20 20 C 1.39620 * 120.11507 * 0.02562 * 19 17 16 21 21 C 1.37975 * 119.99028 * 180.02562 * 20 19 17 22 22 C 1.38267 * 120.21454 * 359.97438 * 21 20 19 23 23 C 1.38909 * 120.22999 * 0.02562 * 22 21 20 24 24 N 1.40213 * 119.99832 * 180.02562 * 23 22 21 25 25 C 1.35223 * 126.05107 * 4.70685 * 24 23 22 26 26 C 1.35320 * 107.71261 * 179.87613 * 25 24 23 27 27 C 1.39923 * 107.92974 * 0.39260 * 26 25 24 28 28 N 1.30874 * 108.24181 * 359.75818 * 27 26 25 29 29 C 1.38596 * 120.01085 * 359.67572 * 23 22 21 30 30 C 1.53780 * 113.61432 * 204.99886 * 10 9 7 31 31 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 33 33 H 1.08994 * 113.61239 * 254.52531 * 12 10 9 34 34 H 1.08997 * 113.61460 * 25.43216 * 12 10 9 35 35 H 1.08997 * 109.47842 * 32.49616 * 15 13 12 36 36 H 1.09005 * 109.47064 * 152.49820 * 15 13 12 37 37 H 0.96992 * 119.99998 * 0.02562 * 16 15 13 38 38 H 1.07999 * 120.00390 * 359.97438 * 20 19 17 39 39 H 1.07997 * 119.89287 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.88167 * 179.97438 * 22 21 20 41 41 H 1.08003 * 126.14333 * 0.03282 * 25 24 23 42 42 H 1.08004 * 126.03481 * 180.15353 * 26 25 24 43 43 H 1.07998 * 125.87588 * 179.73463 * 27 26 25 44 44 H 1.08002 * 120.11341 * 180.32028 * 29 23 22 45 45 H 1.08999 * 113.61484 * 334.56886 * 30 10 9 46 46 H 1.08995 * 113.61500 * 105.47253 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0657 -3.5638 -0.4048 12 6 1.9992 -4.4020 1.3444 13 6 1.8482 -5.6975 0.5296 14 1 2.7981 -6.1645 0.2694 15 6 0.8451 -6.6851 1.1291 16 7 1.5263 -7.5431 2.1017 17 6 0.8360 -8.4949 2.7606 18 8 -0.3517 -8.6416 2.5475 19 6 1.5233 -9.3604 3.7427 20 6 2.8874 -9.1936 3.9897 21 6 3.5263 -10.0031 4.9062 22 6 2.8201 -10.9804 5.5829 23 6 1.4628 -11.1543 5.3441 24 7 0.7512 -12.1465 6.0334 25 6 1.2385 -12.9385 7.0151 26 6 0.2388 -13.7565 7.4185 27 6 -0.8946 -13.4615 6.6528 28 7 -0.5886 -12.4971 5.8227 29 6 0.8101 -10.3423 4.4300 30 6 1.2604 -4.8287 -0.5949 31 1 -0.4850 0.8401 0.0004 32 1 0.3557 -2.3880 0.0005 33 1 2.9272 -4.3500 1.9136 34 1 1.1209 -4.1569 1.9415 35 1 0.0464 -6.1349 1.6265 36 1 0.4223 -7.3006 0.3350 37 1 2.4739 -7.4258 2.2720 38 1 3.4424 -8.4315 3.4628 39 1 4.5816 -9.8729 5.0958 40 1 3.3257 -11.6113 6.2989 41 1 2.2441 -12.9198 7.4085 42 1 0.3052 -14.5074 8.1920 43 1 -1.8562 -13.9465 6.7329 44 1 -0.2463 -10.4726 4.2469 45 1 0.1800 -4.7002 -0.5280 46 1 1.5919 -5.1211 -1.5912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086224721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:13 Heat of formation + Delta-G solvation = 108.618301 kcal Electronic energy + Delta-G solvation = -27153.466575 eV Core-core repulsion = 23238.982936 eV Total energy + Delta-G solvation = -3914.483639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.95508 -40.40549 -38.98003 -38.23163 -34.87100 -34.02316 -33.26707 -31.87148 -30.72753 -30.24265 -29.45549 -27.43295 -25.11567 -24.58171 -24.00621 -23.50346 -21.92382 -21.18485 -20.95975 -20.34716 -19.25845 -18.74230 -17.14298 -17.01647 -16.66848 -16.30360 -15.74504 -15.44130 -15.33179 -15.11146 -14.75959 -14.63850 -14.26197 -14.00517 -13.90009 -13.56398 -13.51434 -13.23645 -13.02589 -12.85189 -12.40631 -12.00975 -11.91451 -11.83331 -11.41933 -11.25578 -11.12360 -10.85075 -10.80692 -10.56218 -10.32851 -10.16452 -9.97323 -9.85066 -9.61906 -9.57754 -9.51120 -9.08078 -8.88086 -8.56041 -6.97584 -5.79321 -3.08400 0.17759 0.56691 1.63388 1.89586 2.34905 2.62143 2.97296 3.41784 3.44983 3.46778 3.48777 3.98733 4.17036 4.31407 4.38488 4.54808 4.57125 4.57955 4.78566 4.87466 4.94176 5.00234 5.13406 5.18079 5.20641 5.36299 5.45179 5.47391 5.48064 5.67305 5.72813 5.79509 5.79938 5.83386 5.91422 6.07324 6.07717 6.17358 6.21144 6.28967 6.33878 6.40878 6.56988 6.67527 6.80261 7.09394 7.17628 7.35452 7.67692 8.05022 8.39145 9.50188 10.08500 10.42537 11.42969 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024468 B = 0.001615 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.075422 B =17333.804407 C =17547.739086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.161 4.161 13 C -0.128 4.128 14 H 0.088 0.912 15 C 0.131 3.869 16 N -0.717 5.717 17 C 0.553 3.447 18 O -0.531 6.531 19 C -0.105 4.105 20 C -0.096 4.096 21 C -0.097 4.097 22 C -0.120 4.120 23 C 0.151 3.849 24 N -0.323 5.323 25 C 0.051 3.949 26 C -0.261 4.261 27 C 0.055 3.945 28 N -0.285 5.285 29 C -0.061 4.061 30 C -0.142 4.142 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.400 0.600 38 H 0.135 0.865 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.178 0.822 42 H 0.155 0.845 43 H 0.191 0.809 44 H 0.152 0.848 45 H 0.081 0.919 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.988 -29.470 13.762 33.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.053 3.947 11 H 0.093 0.907 12 C -0.202 4.202 13 C -0.147 4.147 14 H 0.107 0.893 15 C 0.008 3.992 16 N -0.368 5.368 17 C 0.340 3.660 18 O -0.409 6.409 19 C -0.108 4.108 20 C -0.115 4.115 21 C -0.116 4.116 22 C -0.141 4.141 23 C 0.059 3.941 24 N -0.099 5.099 25 C -0.091 4.091 26 C -0.290 4.290 27 C -0.132 4.132 28 N -0.103 5.103 29 C -0.082 4.082 30 C -0.182 4.182 31 H 0.066 0.934 32 H 0.220 0.780 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.235 0.765 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.152 0.848 41 H 0.195 0.805 42 H 0.172 0.828 43 H 0.208 0.792 44 H 0.170 0.830 45 H 0.099 0.901 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.837 -28.547 12.596 31.942 hybrid contribution 0.913 0.327 0.941 1.351 sum 7.750 -28.219 13.537 32.243 Atomic orbital electron populations 1.69664 1.05140 1.25761 1.57377 1.24773 0.95520 0.97797 1.02800 0.86189 0.78649 0.83820 0.77510 1.21715 1.20739 1.21750 1.19303 0.91067 0.84259 1.43027 0.91093 1.42414 1.05777 0.99878 1.86984 1.21519 0.95323 0.85065 0.92743 0.90652 1.23963 1.01386 0.94894 0.99989 1.22651 0.98355 0.94381 0.99311 0.89335 1.21510 0.95400 0.91522 0.90733 1.45953 1.13270 1.35004 1.42601 1.18130 0.86660 0.80419 0.80837 1.90811 1.14879 1.69948 1.65253 1.19888 0.94057 0.97927 0.98974 1.21436 0.93316 0.99102 0.97629 1.20923 1.00435 0.94496 0.95697 1.20984 0.91333 1.00194 1.01569 1.17402 0.90554 0.90359 0.95810 1.45897 1.08866 1.27200 1.27957 1.22646 1.00808 0.93507 0.92175 1.21636 0.93061 1.06768 1.07499 1.24147 1.00243 0.95104 0.93745 1.77576 0.91515 1.17521 1.23716 1.20979 1.01686 0.92355 0.93191 1.23451 1.01103 0.96961 0.96674 0.93436 0.78049 0.92769 0.90298 0.90913 0.91461 0.76504 0.84676 0.84067 0.84770 0.80461 0.82754 0.79226 0.83038 0.90052 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.25 -6.75 9.97 -15.06 -0.15 -6.90 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -17.64 5.40 -52.64 -0.28 -17.93 16 10 C 0.17 3.14 4.48 -67.12 -0.30 2.84 16 11 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 12 C -0.16 -2.58 7.43 -25.91 -0.19 -2.78 16 13 C -0.13 -1.64 3.76 -89.80 -0.34 -1.98 16 14 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 15 C 0.13 1.70 5.51 -4.04 -0.02 1.67 16 16 N -0.72 -8.02 5.51 -61.25 -0.34 -8.35 16 17 C 0.55 7.32 7.77 -12.33 -0.10 7.22 16 18 O -0.53 -9.20 16.34 5.32 0.09 -9.12 16 19 C -0.10 -1.12 5.87 -104.99 -0.62 -1.73 16 20 C -0.10 -0.70 9.54 -39.16 -0.37 -1.07 16 21 C -0.10 -0.55 10.02 -39.67 -0.40 -0.95 16 22 C -0.12 -0.78 9.45 -39.32 -0.37 -1.15 16 23 C 0.15 1.46 6.67 -83.64 -0.56 0.90 16 24 N -0.32 -3.22 3.80 -10.73 -0.04 -3.26 16 25 C 0.05 0.35 10.79 -17.10 -0.18 0.17 16 26 C -0.26 -1.69 10.81 -39.99 -0.43 -2.13 16 27 C 0.05 0.44 12.03 -17.33 -0.21 0.23 16 28 N -0.28 -3.24 11.88 30.64 0.36 -2.88 16 29 C -0.06 -0.71 9.21 -38.99 -0.36 -1.07 16 30 C -0.14 -2.21 7.39 -25.92 -0.19 -2.40 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.39 10.20 7.92 -40.82 -0.32 9.88 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 35 H 0.07 1.08 7.84 -51.93 -0.41 0.67 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.40 3.29 6.50 -40.82 -0.27 3.03 16 38 H 0.14 0.66 6.40 -52.49 -0.34 0.33 16 39 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 40 H 0.13 0.48 6.74 -52.49 -0.35 0.12 16 41 H 0.18 0.54 7.06 -52.48 -0.37 0.17 16 42 H 0.15 0.57 8.06 -52.48 -0.42 0.15 16 43 H 0.19 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.15 2.08 7.29 -52.49 -0.38 1.70 16 45 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -35.58 389.77 -9.72 -45.30 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.19 Total: 10.13 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -4.89 Total: -9.58 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.43 Total: -59.81 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.58 -9.72 -45.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086224721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.922 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds