Wall clock time and date at job start Sat Apr 11 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.85556 * 336.19726 * 10 9 7 12 12 C 1.53788 * 113.61090 * 107.50380 * 10 9 7 13 13 C 1.53788 * 87.08004 * 139.98063 * 12 10 9 14 14 H 1.09000 * 113.69114 * 89.12562 * 13 12 10 15 15 C 1.52996 * 113.61144 * 220.02059 * 13 12 10 16 16 N 1.46500 * 109.47030 * 272.49064 * 15 13 12 17 17 C 1.34777 * 120.00135 * 179.97438 * 16 15 13 18 18 O 1.21551 * 119.99833 * 0.02562 * 17 16 15 19 19 C 1.47852 * 120.00047 * 180.02562 * 17 16 15 20 20 C 1.39620 * 120.11507 * 0.02562 * 19 17 16 21 21 C 1.37975 * 119.99028 * 180.02562 * 20 19 17 22 22 C 1.38267 * 120.21454 * 359.97438 * 21 20 19 23 23 C 1.38909 * 120.22999 * 0.02562 * 22 21 20 24 24 N 1.40213 * 119.99832 * 180.02562 * 23 22 21 25 25 C 1.35223 * 126.05107 * 4.70685 * 24 23 22 26 26 C 1.35320 * 107.71261 * 179.87613 * 25 24 23 27 27 C 1.39923 * 107.92974 * 0.39260 * 26 25 24 28 28 N 1.30874 * 108.24181 * 359.75818 * 27 26 25 29 29 C 1.38596 * 120.01085 * 359.67572 * 23 22 21 30 30 C 1.53780 * 113.61432 * 204.99886 * 10 9 7 31 31 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 33 33 H 1.08994 * 113.61239 * 254.52531 * 12 10 9 34 34 H 1.08997 * 113.61460 * 25.43216 * 12 10 9 35 35 H 1.08997 * 109.47842 * 32.49616 * 15 13 12 36 36 H 1.09005 * 109.47064 * 152.49820 * 15 13 12 37 37 H 0.96992 * 119.99998 * 0.02562 * 16 15 13 38 38 H 1.07999 * 120.00390 * 359.97438 * 20 19 17 39 39 H 1.07997 * 119.89287 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.88167 * 179.97438 * 22 21 20 41 41 H 1.08003 * 126.14333 * 0.03282 * 25 24 23 42 42 H 1.08004 * 126.03481 * 180.15353 * 26 25 24 43 43 H 1.07998 * 125.87588 * 179.73463 * 27 26 25 44 44 H 1.08002 * 120.11341 * 180.32028 * 29 23 22 45 45 H 1.08999 * 113.61484 * 334.56886 * 30 10 9 46 46 H 1.08995 * 113.61500 * 105.47253 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0657 -3.5638 -0.4048 12 6 1.9992 -4.4020 1.3444 13 6 1.8482 -5.6975 0.5296 14 1 2.7981 -6.1645 0.2694 15 6 0.8451 -6.6851 1.1291 16 7 1.5263 -7.5431 2.1017 17 6 0.8360 -8.4949 2.7606 18 8 -0.3517 -8.6416 2.5475 19 6 1.5233 -9.3604 3.7427 20 6 2.8874 -9.1936 3.9897 21 6 3.5263 -10.0031 4.9062 22 6 2.8201 -10.9804 5.5829 23 6 1.4628 -11.1543 5.3441 24 7 0.7512 -12.1465 6.0334 25 6 1.2385 -12.9385 7.0151 26 6 0.2388 -13.7565 7.4185 27 6 -0.8946 -13.4615 6.6528 28 7 -0.5886 -12.4971 5.8227 29 6 0.8101 -10.3423 4.4300 30 6 1.2604 -4.8287 -0.5949 31 1 -0.4850 0.8401 0.0004 32 1 0.3557 -2.3880 0.0005 33 1 2.9272 -4.3500 1.9136 34 1 1.1209 -4.1569 1.9415 35 1 0.0464 -6.1349 1.6265 36 1 0.4223 -7.3006 0.3350 37 1 2.4739 -7.4258 2.2720 38 1 3.4424 -8.4315 3.4628 39 1 4.5816 -9.8729 5.0958 40 1 3.3257 -11.6113 6.2989 41 1 2.2441 -12.9198 7.4085 42 1 0.3052 -14.5074 8.1920 43 1 -1.8562 -13.9465 6.7329 44 1 -0.2463 -10.4726 4.2469 45 1 0.1800 -4.7002 -0.5280 46 1 1.5919 -5.1211 -1.5912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086224721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:12 Heat of formation + Delta-G solvation = 84.670452 kcal Electronic energy + Delta-G solvation = -27154.505032 eV Core-core repulsion = 23238.982936 eV Total energy + Delta-G solvation = -3915.522096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.52720 -41.31556 -40.05979 -39.25329 -36.16306 -35.18902 -34.51207 -32.55936 -32.15036 -31.22693 -30.12946 -28.63687 -26.45033 -25.99298 -25.00985 -24.38823 -22.67502 -22.42366 -21.60851 -21.20758 -20.47215 -19.61379 -18.99553 -17.83613 -17.47484 -17.15009 -16.63559 -16.58827 -16.31325 -16.03512 -15.97062 -15.65201 -15.38356 -15.06397 -14.81331 -14.75418 -14.51333 -14.37999 -13.72334 -13.67063 -13.42240 -13.23203 -13.04585 -12.97838 -12.83745 -12.64258 -12.62923 -12.20886 -12.07021 -11.71322 -11.62014 -11.55136 -11.43502 -11.19664 -10.98819 -10.80008 -10.32876 -10.18791 -10.03918 -9.14701 -8.97053 -7.93887 -5.22387 -0.42852 -0.09563 1.08376 1.35550 1.47756 1.49544 1.57982 1.76734 1.84245 2.02782 2.57398 2.73587 3.36360 3.39905 3.59919 3.71744 3.73218 3.77344 3.89985 3.92363 4.02982 4.06002 4.21552 4.26068 4.33165 4.37653 4.43259 4.54790 4.63808 4.71887 4.75187 4.81015 4.97335 4.99520 5.02516 5.04523 5.10770 5.15623 5.20612 5.23166 5.30753 5.41074 5.53005 5.55156 5.67980 5.74081 6.15026 6.28241 6.45150 6.60735 7.10164 7.33627 8.12447 8.33737 9.29677 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024468 B = 0.001615 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.075422 B =17333.804407 C =17547.739086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.974 3.026 4 H -0.289 1.289 5 H -0.266 1.266 6 H -0.299 1.299 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.731 5.731 10 C 0.143 3.857 11 H 0.084 0.916 12 C -0.153 4.153 13 C -0.094 4.094 14 H 0.128 0.872 15 C 0.136 3.864 16 N -0.700 5.700 17 C 0.549 3.451 18 O -0.587 6.587 19 C -0.124 4.124 20 C -0.087 4.087 21 C -0.083 4.083 22 C -0.105 4.105 23 C 0.134 3.866 24 N -0.339 5.339 25 C 0.051 3.949 26 C -0.265 4.265 27 C 0.048 3.952 28 N -0.349 5.349 29 C -0.091 4.091 30 C -0.138 4.138 31 H 0.249 0.751 32 H 0.371 0.629 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.418 0.582 38 H 0.164 0.836 39 H 0.187 0.813 40 H 0.173 0.827 41 H 0.220 0.780 42 H 0.184 0.816 43 H 0.212 0.788 44 H 0.110 0.890 45 H 0.064 0.936 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.841 -31.239 15.247 37.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.803 3.197 4 H -0.216 1.216 5 H -0.190 1.190 6 H -0.226 1.226 7 C -0.374 4.374 8 H 0.099 0.901 9 N -0.368 5.368 10 C 0.034 3.966 11 H 0.102 0.898 12 C -0.194 4.194 13 C -0.113 4.113 14 H 0.146 0.854 15 C 0.012 3.988 16 N -0.353 5.353 17 C 0.338 3.662 18 O -0.469 6.469 19 C -0.128 4.128 20 C -0.106 4.106 21 C -0.101 4.101 22 C -0.126 4.126 23 C 0.042 3.958 24 N -0.116 5.116 25 C -0.090 4.090 26 C -0.293 4.293 27 C -0.138 4.138 28 N -0.168 5.168 29 C -0.113 4.113 30 C -0.178 4.178 31 H 0.058 0.942 32 H 0.202 0.798 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.257 0.743 38 H 0.182 0.818 39 H 0.204 0.796 40 H 0.190 0.810 41 H 0.236 0.764 42 H 0.202 0.798 43 H 0.228 0.772 44 H 0.129 0.871 45 H 0.082 0.918 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.778 -30.366 14.091 35.487 hybrid contribution -0.549 0.736 0.538 1.064 sum 11.229 -29.630 14.629 34.900 Atomic orbital electron populations 1.69836 1.06791 1.25956 1.59827 1.25613 0.96347 1.01317 1.03993 0.85127 0.77794 0.79443 0.77332 1.21578 1.19015 1.22564 1.19764 0.91693 0.85345 1.40587 0.90064 1.42655 1.05339 1.01320 1.87507 1.21976 0.95714 0.83745 0.95202 0.89762 1.23732 1.01186 0.95930 0.98551 1.22486 0.99436 0.92818 0.96511 0.85426 1.21302 0.95061 0.91531 0.90867 1.45740 1.13967 1.33912 1.41640 1.18648 0.86146 0.80547 0.80902 1.90778 1.17415 1.71572 1.67106 1.19699 0.95671 0.98085 0.99338 1.21777 0.91479 0.99679 0.97713 1.21468 1.02210 0.92696 0.93722 1.21486 0.89601 1.00173 1.01322 1.17691 0.91957 0.90358 0.95802 1.46049 1.08599 1.27938 1.28972 1.23427 1.02575 0.92229 0.90800 1.22067 0.92201 1.07278 1.07751 1.24708 1.01818 0.94180 0.93108 1.77537 0.93385 1.19704 1.26171 1.20772 1.00284 0.94569 0.95628 1.23342 0.99864 0.96028 0.98565 0.94193 0.79774 0.90863 0.92905 0.93571 0.91567 0.74340 0.81836 0.79611 0.80976 0.76360 0.79834 0.77187 0.87149 0.91777 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 2 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 3 Si 0.97 46.05 29.55 68.60 2.03 48.07 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 6 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 7 C -0.24 -13.31 9.97 84.03 0.84 -12.48 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.73 -36.68 5.40 -320.45 -1.73 -38.41 16 10 C 0.14 5.27 4.48 45.52 0.20 5.48 16 11 H 0.08 2.96 8.10 -2.39 -0.02 2.94 16 12 C -0.15 -4.70 7.43 31.13 0.23 -4.47 16 13 C -0.09 -2.19 3.76 -10.27 -0.04 -2.23 16 14 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 15 C 0.14 3.47 5.51 86.38 0.48 3.95 16 16 N -0.70 -14.92 5.51 -465.97 -2.57 -17.48 16 17 C 0.55 15.10 7.77 86.79 0.67 15.77 16 18 O -0.59 -22.23 16.34 -3.88 -0.06 -22.29 16 19 C -0.12 -2.66 5.87 -20.10 -0.12 -2.78 16 20 C -0.09 -0.99 9.54 22.54 0.21 -0.78 16 21 C -0.08 -0.54 10.02 22.21 0.22 -0.32 16 22 C -0.11 -0.97 9.45 22.44 0.21 -0.76 16 23 C 0.13 2.54 6.67 38.05 0.25 2.79 16 24 N -0.34 -6.72 3.80 -187.86 -0.71 -7.43 16 25 C 0.05 0.59 10.79 83.50 0.90 1.49 16 26 C -0.27 -2.99 10.81 22.00 0.24 -2.75 16 27 C 0.05 0.79 12.03 85.24 1.03 1.82 16 28 N -0.35 -8.55 11.88 -56.97 -0.68 -9.22 16 29 C -0.09 -2.29 9.21 22.65 0.21 -2.08 16 30 C -0.14 -4.17 7.39 31.12 0.23 -3.94 16 31 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.37 20.40 7.92 -92.71 -0.73 19.67 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.92 7.90 -2.39 -0.02 1.90 16 35 H 0.05 1.44 7.84 -2.39 -0.02 1.42 16 36 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.42 5.56 6.50 -92.71 -0.60 4.96 16 38 H 0.16 0.81 6.40 -2.91 -0.02 0.80 16 39 H 0.19 -0.34 8.06 -2.91 -0.02 -0.36 16 40 H 0.17 0.22 6.74 -2.91 -0.02 0.20 16 41 H 0.22 0.32 7.06 -2.91 -0.02 0.30 16 42 H 0.18 0.82 8.06 -2.91 -0.02 0.79 16 43 H 0.21 2.07 8.06 -2.91 -0.02 2.04 16 44 H 0.11 3.59 7.29 -2.91 -0.02 3.57 16 45 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 46 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -85.55 389.77 2.48 -83.07 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: -0.31 Total: 29.42 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 6.24 Total: -5.49 kcal Atomic # 7 Polarization: -127.37 SS G_CDS: -5.40 Total: -132.78 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.06 Total: -22.29 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -85.55 2.48 -83.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086224721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.738 kcal (2) G-P(sol) polarization free energy of solvation -85.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds