Wall clock time and date at job start Sat Apr 11 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48504 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46791 * 299.99323 * 3 2 1 6 6 H 1.48492 * 109.47273 * 59.99352 * 3 2 1 7 7 C 1.38815 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99948 * 179.97438 * 9 7 2 11 11 C 1.53773 * 113.61686 * 254.14005 * 10 9 7 12 12 C 1.54049 * 86.98868 * 270.83833 * 11 10 9 13 13 C 1.52993 * 113.70060 * 220.01038 * 12 11 10 14 14 N 1.46501 * 109.47405 * 272.53026 * 13 12 11 15 15 C 1.34771 * 120.00020 * 179.97438 * 14 13 12 16 16 O 1.21546 * 120.00302 * 0.02562 * 15 14 13 17 17 C 1.47863 * 119.99595 * 180.02562 * 15 14 13 18 18 C 1.39608 * 120.11690 * 359.72961 * 17 15 14 19 19 C 1.37979 * 119.98786 * 179.72132 * 18 17 15 20 20 C 1.38268 * 120.20977 * 0.57430 * 19 18 17 21 21 C 1.38897 * 120.23054 * 359.67624 * 20 19 18 22 22 N 1.40262 * 119.99175 * 180.02562 * 21 20 19 23 23 C 1.37097 * 126.47505 * 0.02562 * 22 21 20 24 24 C 1.34657 * 106.83426 * 179.97438 * 23 22 21 25 25 N 1.34127 * 108.19289 * 359.97438 * 24 23 22 26 26 C 1.30515 * 109.35395 * 359.74586 * 25 24 23 27 27 C 1.38577 * 120.01179 * 0.04527 * 21 20 19 28 28 C 1.53781 * 113.61361 * 156.53166 * 10 9 7 29 29 H 0.97000 * 119.99576 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00345 * 359.97438 * 9 7 2 31 31 H 1.09002 * 112.84852 * 25.33765 * 10 9 7 32 32 H 1.09007 * 113.61678 * 25.42910 * 11 10 9 33 33 H 1.09000 * 113.61916 * 156.33583 * 11 10 9 34 34 H 1.08998 * 113.61160 * 89.11169 * 12 11 10 35 35 H 1.09002 * 109.46900 * 32.52907 * 13 12 11 36 36 H 1.08998 * 109.47474 * 152.53098 * 13 12 11 37 37 H 0.96997 * 119.99408 * 0.02562 * 14 13 12 38 38 H 1.08003 * 120.00844 * 359.97412 * 18 17 15 39 39 H 1.07995 * 119.89583 * 180.27831 * 19 18 17 40 40 H 1.08003 * 119.88356 * 179.70287 * 20 19 18 41 41 H 1.07995 * 126.58281 * 0.02562 * 23 22 21 42 42 H 1.07998 * 125.90424 * 180.02562 * 24 23 22 43 43 H 1.08002 * 125.71716 * 180.24513 * 26 25 24 44 44 H 1.08006 * 120.10545 * 179.97438 * 27 21 20 45 45 H 1.09001 * 113.61158 * 203.66864 * 28 10 9 46 46 H 1.08998 * 113.61196 * 334.56885 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2123 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 2.0326 -4.3828 -1.3548 12 6 0.7400 -5.0678 -0.8717 13 6 0.6459 -6.5453 -1.2576 14 7 0.0448 -6.6652 -2.5882 15 6 -0.1381 -7.8821 -3.1378 16 8 0.1953 -8.8802 -2.5293 17 6 -0.7443 -8.0031 -4.4810 18 6 -1.1332 -6.8587 -5.1796 19 6 -1.6934 -6.9743 -6.4353 20 6 -1.8822 -8.2219 -7.0007 21 6 -1.5033 -9.3667 -6.3113 22 7 -1.6968 -10.6297 -6.8898 23 6 -2.2437 -10.8875 -8.1203 24 6 -2.2397 -12.2250 -8.2764 25 7 -1.7056 -12.7735 -7.1751 26 6 -1.3712 -11.8282 -6.3396 27 6 -0.9346 -9.2611 -5.0521 28 6 1.2467 -4.8365 0.5617 29 1 -0.4849 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 3.0559 -3.5695 0.4304 32 1 1.8839 -3.7164 -2.2045 33 1 2.8651 -5.0720 -1.4967 34 1 -0.1652 -4.5095 -1.1102 35 1 1.6445 -6.9821 -1.2693 36 1 0.0275 -7.0720 -0.5308 37 1 -0.2209 -5.8688 -3.0738 38 1 -0.9920 -5.8828 -4.7390 39 1 -1.9896 -6.0878 -6.9763 40 1 -2.3256 -8.3065 -7.9819 41 1 -2.6071 -10.1579 -8.8287 42 1 -2.6028 -12.7629 -9.1395 43 1 -0.9152 -11.9746 -5.3716 44 1 -0.6398 -10.1503 -4.5145 45 1 1.8648 -5.6494 0.9428 46 1 0.4640 -4.5360 1.2583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091309948.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:55 Heat of formation + Delta-G solvation = 92.231282 kcal Electronic energy + Delta-G solvation = -27377.395442 eV Core-core repulsion = 23462.201209 eV Total energy + Delta-G solvation = -3915.194234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.74053 -40.52076 -39.08451 -38.34302 -34.99009 -34.50174 -33.27465 -31.98087 -30.55702 -30.01899 -29.54376 -27.52297 -25.14352 -24.58685 -24.05767 -23.58280 -22.05969 -21.71837 -21.07526 -20.46254 -19.34193 -18.35980 -17.45490 -17.00502 -16.74977 -16.34367 -15.95822 -15.53049 -15.37805 -14.99328 -14.87240 -14.46375 -14.25524 -14.22481 -14.11842 -13.88712 -13.61152 -13.53702 -13.06236 -12.97519 -12.51763 -12.33019 -11.99230 -11.95051 -11.47357 -11.13486 -11.10644 -10.91376 -10.57631 -10.50620 -10.37123 -10.18038 -9.94200 -9.75811 -9.66835 -9.55984 -9.21877 -9.12264 -8.95108 -8.79397 -7.06494 -5.87124 -3.16182 0.15195 0.46721 1.73355 2.14155 2.54658 2.72729 2.94106 3.36611 3.36846 3.43288 3.45113 4.06551 4.11561 4.24671 4.29526 4.49187 4.50265 4.53512 4.62258 4.85263 4.95179 4.97691 5.07422 5.11675 5.15838 5.25272 5.36004 5.39074 5.52544 5.61394 5.66046 5.72160 5.78346 5.86384 5.89874 6.01394 6.02421 6.14080 6.25563 6.28079 6.30057 6.51248 6.66555 6.75893 6.81517 6.96683 7.30141 7.56143 7.63947 7.96486 8.32076 9.43055 10.00105 10.34301 11.35315 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022277 B = 0.001763 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.603724 B =15874.771639 C =16838.395622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.169 4.169 12 C -0.121 4.121 13 C 0.130 3.870 14 N -0.714 5.714 15 C 0.554 3.446 16 O -0.537 6.537 17 C -0.102 4.102 18 C -0.091 4.091 19 C -0.096 4.096 20 C -0.110 4.110 21 C 0.124 3.876 22 N -0.411 5.411 23 C -0.056 4.056 24 C -0.022 4.022 25 N -0.485 5.485 26 C 0.192 3.808 27 C -0.076 4.076 28 C -0.147 4.147 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.403 0.597 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.136 0.864 41 H 0.179 0.821 42 H 0.175 0.825 43 H 0.211 0.789 44 H 0.146 0.854 45 H 0.078 0.922 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.150 -18.652 -15.505 24.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.054 3.946 11 C -0.210 4.210 12 C -0.139 4.139 13 C 0.007 3.993 14 N -0.365 5.365 15 C 0.341 3.659 16 O -0.416 6.416 17 C -0.105 4.105 18 C -0.110 4.110 19 C -0.114 4.114 20 C -0.130 4.130 21 C 0.032 3.968 22 N -0.090 5.090 23 C -0.186 4.186 24 C -0.168 4.168 25 N -0.202 5.202 26 C -0.089 4.089 27 C -0.097 4.097 28 C -0.186 4.186 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.238 0.762 38 H 0.156 0.844 39 H 0.160 0.840 40 H 0.153 0.847 41 H 0.196 0.804 42 H 0.192 0.808 43 H 0.227 0.773 44 H 0.163 0.837 45 H 0.096 0.904 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.671 -19.968 -14.870 25.331 hybrid contribution -0.236 2.205 -0.534 2.281 sum -4.907 -17.764 -15.403 24.019 Atomic orbital electron populations 1.69667 1.05141 1.25697 1.57536 1.24761 0.95542 0.97800 1.02750 0.86103 0.78843 0.83942 0.77210 1.20475 1.21850 1.21804 1.19337 0.91176 0.83948 1.42876 0.90918 1.42172 1.05659 0.99432 1.87185 1.21057 0.95089 0.85613 0.92796 1.23942 0.95447 0.99598 1.01980 1.22773 0.99684 0.92796 0.98672 1.21561 0.98167 0.97407 0.82142 1.45990 1.62710 1.07853 1.19989 1.18105 0.78843 0.83796 0.85185 1.90784 1.51071 1.36632 1.63077 1.19834 1.01945 0.93380 0.95373 1.21516 0.96495 0.98278 0.94696 1.21034 0.98100 0.97169 0.95104 1.21065 1.00496 0.91013 1.00435 1.17676 1.01822 0.83461 0.93855 1.43241 1.45151 1.05651 1.14942 1.22778 1.07632 0.99053 0.89103 1.22398 1.04835 0.91038 0.98521 1.70363 1.15814 1.31252 1.02786 1.25406 1.03642 0.78576 1.01246 1.20865 0.97516 0.98605 0.92717 1.23422 1.00619 0.99702 0.94892 0.93480 0.78131 0.92000 0.91460 0.91361 0.88833 0.91226 0.91469 0.76167 0.84416 0.83955 0.84656 0.80428 0.80764 0.77270 0.83674 0.90367 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.06 13.06 55.49 0.72 -26.33 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.45 9.97 -15.06 -0.15 -6.60 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.71 -16.67 5.31 -52.64 -0.28 -16.95 16 10 C 0.17 3.08 4.55 -67.12 -0.31 2.78 16 11 C -0.17 -2.60 7.45 -25.78 -0.19 -2.80 16 12 C -0.12 -1.65 3.64 -89.67 -0.33 -1.97 16 13 C 0.13 1.58 5.51 -4.04 -0.02 1.56 16 14 N -0.71 -7.82 5.51 -61.25 -0.34 -8.15 16 15 C 0.55 6.67 7.77 -12.32 -0.10 6.57 16 16 O -0.54 -8.22 16.34 5.33 0.09 -8.13 16 17 C -0.10 -0.97 5.87 -104.99 -0.62 -1.59 16 18 C -0.09 -0.66 9.54 -39.17 -0.37 -1.03 16 19 C -0.10 -0.57 10.03 -39.66 -0.40 -0.96 16 20 C -0.11 -0.70 9.47 -39.33 -0.37 -1.07 16 21 C 0.12 1.02 6.63 -83.63 -0.55 0.47 16 22 N -0.41 -3.55 2.99 -62.14 -0.19 -3.73 16 23 C -0.06 -0.41 10.85 -16.46 -0.18 -0.59 16 24 C -0.02 -0.19 11.85 -17.82 -0.21 -0.40 16 25 N -0.49 -5.31 11.24 -14.48 -0.16 -5.47 16 26 C 0.19 1.81 11.91 -89.64 -1.07 0.74 16 27 C -0.08 -0.70 9.01 -39.00 -0.35 -1.06 16 28 C -0.15 -2.20 7.38 -25.92 -0.19 -2.39 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.38 9.60 7.90 -40.82 -0.32 9.28 16 31 H 0.06 1.16 8.11 -51.93 -0.42 0.74 16 32 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 33 H 0.07 0.95 7.91 -51.93 -0.41 0.54 16 34 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.40 3.64 6.50 -40.82 -0.27 3.38 16 38 H 0.14 0.79 6.40 -52.48 -0.34 0.45 16 39 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 40 H 0.14 0.56 6.80 -52.48 -0.36 0.20 16 41 H 0.18 0.72 7.14 -52.49 -0.37 0.34 16 42 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.21 1.46 7.06 -52.49 -0.37 1.09 16 44 H 0.15 1.32 6.36 -52.48 -0.33 0.99 16 45 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -33.55 387.23 -10.95 -44.50 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -6.10 Total: 10.60 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -5.50 Total: -8.78 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.24 Total: -60.64 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.09 Total: -8.13 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.55 -10.95 -44.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091309948.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.733 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds