Wall clock time and date at job start Sat Apr 11 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00212 * 2 1 4 4 H 1.48504 * 109.47141 * 265.86438 * 3 2 1 5 5 H 1.48503 * 109.47000 * 25.86372 * 3 2 1 6 6 H 1.48493 * 109.47439 * 145.86070 * 3 2 1 7 7 C 1.38814 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00061 * 356.75686 * 7 2 1 9 9 N 1.36935 * 119.99971 * 176.75851 * 7 2 1 10 10 C 1.46503 * 119.99889 * 177.45924 * 9 7 2 11 11 H 1.09000 * 109.17875 * 13.10876 * 10 9 7 12 12 C 1.53033 * 109.32483 * 253.55081 * 10 9 7 13 13 C 1.53970 * 108.92977 * 295.21159 * 12 10 9 14 14 H 1.09003 * 112.98791 * 168.93719 * 13 12 10 15 15 C 1.55424 * 106.41937 * 293.74829 * 13 12 10 16 16 C 1.55176 * 100.35345 * 73.38009 * 15 13 12 17 17 H 1.08997 * 112.48686 * 163.35067 * 16 15 13 18 18 C 1.53270 * 109.30217 * 132.86458 * 10 9 7 19 19 N 1.47795 * 104.24889 * 40.55282 * 16 15 13 20 20 C 1.34776 * 125.85331 * 153.52916 * 19 16 15 21 21 O 1.21603 * 119.99815 * 186.08049 * 20 19 16 22 22 C 1.47521 * 120.00052 * 6.07410 * 20 19 16 23 23 C 1.46501 * 120.16744 * 9.07098 * 22 20 19 24 24 C 1.35536 * 119.04703 * 179.73514 * 23 22 20 25 25 C 1.41230 * 119.42685 * 0.52754 * 24 23 22 26 26 C 1.37909 * 132.97392 * 179.73482 * 25 24 23 27 27 N 1.33440 * 107.66258 * 179.97438 * 26 25 24 28 28 C 1.30754 * 109.93675 * 0.02562 * 27 26 25 29 29 N 1.35923 * 109.20567 * 0.02562 * 28 27 26 30 30 C 1.36328 * 120.16681 * 189.34003 * 22 20 19 31 31 C 1.47075 * 108.29010 * 333.53294 * 19 16 15 32 32 H 0.97003 * 120.00202 * 359.97438 * 1 2 3 33 33 H 0.96999 * 120.00093 * 357.45645 * 9 7 2 34 34 H 1.08995 * 109.57778 * 175.34566 * 12 10 9 35 35 H 1.09000 * 109.57865 * 55.07814 * 12 10 9 36 36 H 1.09001 * 111.23959 * 191.16116 * 15 13 12 37 37 H 1.09000 * 111.23697 * 315.61004 * 15 13 12 38 38 H 1.08996 * 109.49940 * 305.23690 * 18 10 9 39 39 H 1.08997 * 109.56176 * 185.08891 * 18 10 9 40 40 H 1.07997 * 120.47663 * 0.02562 * 23 22 20 41 41 H 1.08001 * 120.28720 * 180.24288 * 24 23 22 42 42 H 1.08004 * 126.16776 * 0.02562 * 26 25 24 43 43 H 1.08000 * 125.39712 * 180.02562 * 28 27 26 44 44 H 1.07992 * 119.74845 * 359.97438 * 30 22 20 45 45 H 1.08998 * 109.97710 * 241.74765 * 31 19 16 46 46 H 1.09000 * 109.97851 * 120.46267 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5852 1.9959 -1.3965 5 1 1.4066 2.6763 0.6108 6 1 3.5012 1.4670 0.7857 7 6 2.0102 -1.2022 -0.0005 8 1 1.4715 -2.1368 0.0520 9 7 3.3779 -1.2031 -0.0676 10 6 4.1132 -2.4690 -0.0120 11 1 3.4156 -3.2947 -0.1524 12 6 4.7882 -2.6031 1.3548 13 6 5.8476 -1.4952 1.4995 14 1 6.2348 -1.4065 2.5146 15 6 6.9506 -1.8022 0.4484 16 6 6.2129 -1.3989 -0.8558 17 1 6.8949 -1.2608 -1.6948 18 6 5.1654 -2.4931 -1.1262 19 7 5.4838 -0.1651 -0.4948 20 6 5.1217 0.8155 -1.3455 21 8 4.6212 1.8378 -0.9174 22 6 5.3325 0.6487 -2.7960 23 6 5.7476 -0.6487 -3.3352 24 6 5.9295 -0.7779 -4.6721 25 6 5.7266 0.3398 -5.5113 26 6 5.8333 0.5240 -6.8738 27 7 5.5227 1.7950 -7.1361 28 6 5.2286 2.4202 -6.0260 29 7 5.3416 1.5563 -4.9828 30 6 5.1474 1.7025 -3.6409 31 6 5.2213 -0.1907 0.9521 32 1 -0.4850 0.8401 0.0004 33 1 3.8599 -0.3656 -0.1519 34 1 5.2674 -3.5790 1.4313 35 1 4.0418 -2.4999 2.1425 36 1 7.8334 -1.1835 0.6102 37 1 7.2086 -2.8612 0.4447 38 1 4.6834 -2.3069 -2.0859 39 1 5.6532 -3.4676 -1.1465 40 1 5.9018 -1.4912 -2.6775 41 1 6.2316 -1.7262 -5.0915 42 1 6.1163 -0.2255 -7.5981 43 1 4.9413 3.4586 -5.9502 44 1 4.8452 2.6605 -3.2444 45 1 4.1469 -0.1879 1.1358 46 1 5.6833 0.6732 1.4299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094961165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:38 Heat of formation + Delta-G solvation = 198.009332 kcal Electronic energy + Delta-G solvation = -31840.032504 eV Core-core repulsion = 27929.425150 eV Total energy + Delta-G solvation = -3910.607353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.82504 -41.84060 -38.64300 -36.95140 -34.45206 -33.70317 -33.01973 -31.92199 -31.18806 -30.62631 -28.35105 -28.13688 -26.12921 -24.15072 -23.54415 -22.94899 -22.09704 -21.95875 -21.08187 -20.10961 -19.26623 -18.41024 -17.76275 -17.14400 -16.43940 -15.98398 -15.79589 -15.39783 -14.93019 -14.76862 -14.66013 -14.52553 -13.92264 -13.73598 -13.55731 -13.42234 -13.19676 -12.94554 -12.56871 -12.30937 -12.18904 -12.05151 -11.86391 -11.84987 -11.27277 -11.13267 -10.94536 -10.86102 -10.63535 -10.44085 -10.39104 -10.20049 -10.13365 -9.66253 -9.55542 -9.27447 -9.07283 -8.78126 -8.14696 -7.64781 -7.09296 -5.70964 -3.10224 0.57439 0.94369 2.35608 2.62152 3.02520 3.08420 3.43463 3.61854 3.68077 3.92721 4.26534 4.35473 4.46695 4.49169 4.66955 4.68369 4.69222 4.79670 4.81257 4.87901 5.06721 5.30056 5.32433 5.39362 5.39892 5.44228 5.48381 5.63115 5.68282 5.70042 5.77138 5.77670 5.88352 5.91981 5.98799 6.03843 6.20800 6.30869 6.34766 6.36798 6.45160 6.48190 6.55654 6.63427 6.85127 6.99140 7.57176 7.72250 8.03347 8.20693 8.44048 9.24795 9.96232 10.14154 11.42453 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011949 B = 0.005456 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.724398 B = 5130.618582 C = 6285.703449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.309 1.309 6 H -0.260 1.260 7 C -0.262 4.262 8 H 0.084 0.916 9 N -0.756 5.756 10 C 0.178 3.822 11 H 0.070 0.930 12 C -0.134 4.134 13 C -0.094 4.094 14 H 0.095 0.905 15 C -0.127 4.127 16 C 0.109 3.891 17 H 0.108 0.892 18 C -0.161 4.161 19 N -0.592 5.592 20 C 0.568 3.432 21 O -0.516 6.516 22 C -0.136 4.136 23 C -0.135 4.135 24 C -0.085 4.085 25 C 0.008 3.992 26 C -0.025 4.025 27 N -0.454 5.454 28 C 0.148 3.852 29 N -0.374 5.374 30 C 0.122 3.878 31 C 0.057 3.943 32 H 0.258 0.742 33 H 0.384 0.616 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.182 0.818 41 H 0.151 0.849 42 H 0.181 0.819 43 H 0.213 0.787 44 H 0.178 0.822 45 H 0.149 0.851 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.452 -4.283 -4.764 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.238 1.238 6 H -0.187 1.187 7 C -0.392 4.392 8 H 0.102 0.898 9 N -0.414 5.414 10 C 0.068 3.932 11 H 0.088 0.912 12 C -0.174 4.174 13 C -0.113 4.113 14 H 0.113 0.887 15 C -0.165 4.165 16 C 0.006 3.994 17 H 0.125 0.875 18 C -0.201 4.201 19 N -0.327 5.327 20 C 0.358 3.642 21 O -0.395 6.395 22 C -0.142 4.142 23 C -0.154 4.154 24 C -0.105 4.105 25 C -0.100 4.100 26 C -0.178 4.178 27 N -0.167 5.167 28 C -0.127 4.127 29 N -0.046 5.046 30 C 0.000 4.000 31 C -0.064 4.064 32 H 0.067 0.933 33 H 0.235 0.765 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.198 0.802 41 H 0.169 0.831 42 H 0.198 0.802 43 H 0.230 0.770 44 H 0.195 0.805 45 H 0.166 0.834 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.856 -3.179 -5.381 18.919 hybrid contribution 0.310 0.943 0.649 1.186 sum 18.167 -2.236 -4.732 18.905 Atomic orbital electron populations 1.69746 1.05312 1.25884 1.56990 1.24827 0.95369 0.97847 1.01462 0.86621 0.77022 0.83342 0.79494 1.21001 1.23816 1.18741 1.19195 0.81506 0.94526 1.43936 0.89773 1.44856 1.04603 1.04168 1.87796 1.20173 0.91546 0.90936 0.90572 0.91223 1.22425 0.97755 0.96336 1.00920 1.22564 0.95340 0.95056 0.98295 0.88715 1.23072 0.97386 1.01855 0.94223 1.22869 0.93722 0.84452 0.98368 0.87486 1.22978 0.97851 0.97450 1.01818 1.48346 1.55520 1.19757 1.09070 1.17246 0.78856 0.83318 0.84735 1.90817 1.42244 1.28363 1.78081 1.20317 1.06240 0.94033 0.93648 1.23671 0.97964 0.97482 0.96271 1.20462 1.01063 0.96735 0.92194 1.19837 1.08141 0.86929 0.95078 1.22528 1.09310 0.94395 0.91571 1.69936 1.14349 1.06330 1.26058 1.25173 1.09767 0.98010 0.79751 1.42942 1.43944 1.11327 1.06391 1.21668 0.96950 1.01278 0.80146 1.23602 1.07597 0.97088 0.78084 0.93252 0.76543 0.92365 0.91016 0.91166 0.89463 0.90402 0.90633 0.80202 0.83142 0.80181 0.77022 0.80509 0.83416 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.14 13.97 55.49 0.78 -29.36 16 2 C 0.00 0.02 5.50 -17.43 -0.10 -0.07 16 3 Si 0.90 24.63 23.00 -169.99 -3.91 20.72 16 4 H -0.28 -7.85 6.27 56.52 0.35 -7.50 16 5 H -0.31 -8.81 7.11 56.52 0.40 -8.40 16 6 H -0.26 -6.67 3.84 56.52 0.22 -6.45 16 7 C -0.26 -7.34 10.40 -15.06 -0.16 -7.50 16 8 H 0.08 2.52 7.91 -52.49 -0.42 2.10 16 9 N -0.76 -17.00 2.98 -53.27 -0.16 -17.16 16 10 C 0.18 3.05 3.18 -67.77 -0.22 2.83 16 11 H 0.07 1.26 7.81 -51.93 -0.41 0.86 16 12 C -0.13 -1.91 5.36 -26.21 -0.14 -2.05 16 13 C -0.09 -1.22 4.33 -87.93 -0.38 -1.60 16 14 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 15 C -0.13 -1.31 6.18 -24.29 -0.15 -1.46 16 16 C 0.11 1.34 2.93 -65.61 -0.19 1.15 16 17 H 0.11 1.09 5.52 -51.93 -0.29 0.81 16 18 C -0.16 -2.12 4.72 -26.13 -0.12 -2.24 16 19 N -0.59 -9.97 1.81 -167.18 -0.30 -10.27 16 20 C 0.57 10.83 6.21 -12.48 -0.08 10.75 16 21 O -0.52 -11.56 10.11 5.27 0.05 -11.50 16 22 C -0.14 -2.23 5.95 -103.47 -0.62 -2.84 16 23 C -0.13 -1.78 7.56 -37.22 -0.28 -2.06 16 24 C -0.09 -1.00 10.09 -39.41 -0.40 -1.40 16 25 C 0.01 0.11 6.78 -84.02 -0.57 -0.46 16 26 C -0.03 -0.33 12.00 -16.97 -0.20 -0.53 16 27 N -0.45 -6.45 11.19 -13.78 -0.15 -6.60 16 28 C 0.15 1.94 12.76 -89.35 -1.14 0.80 16 29 N -0.37 -5.37 2.94 -61.93 -0.18 -5.55 16 30 C 0.12 1.89 10.50 -16.22 -0.17 1.72 16 31 C 0.06 1.00 4.29 -2.83 -0.01 0.99 16 32 H 0.26 8.06 8.31 -40.82 -0.34 7.72 16 33 H 0.38 8.42 0.29 -71.69 -0.02 8.40 16 34 H 0.06 0.66 7.97 -51.93 -0.41 0.24 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.70 7.75 -51.93 -0.40 0.30 16 38 H 0.08 1.13 6.09 -51.93 -0.32 0.81 16 39 H 0.08 0.73 8.00 -51.93 -0.42 0.32 16 40 H 0.18 2.08 2.06 -52.49 -0.11 1.97 16 41 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.18 1.72 8.06 -52.48 -0.42 1.30 16 43 H 0.21 1.99 8.06 -52.49 -0.42 1.57 16 44 H 0.18 2.60 7.59 -52.49 -0.40 2.20 16 45 H 0.15 3.23 3.33 -58.31 -0.19 3.03 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 331.34 15.07 4.99 4.99 Total: -1.00 -37.02 331.34 -9.51 -46.53 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -5.70 Total: 12.15 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -4.92 Total: -3.95 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -0.02 Total: -68.95 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.05 Total: -11.50 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -3.91 Total: 20.72 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -37.02 -9.51 -46.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094961165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.540 kcal (2) G-P(sol) polarization free energy of solvation -37.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 198.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds