Wall clock time and date at job start Sat Apr 11 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99876 * 2 1 4 4 H 1.48505 * 109.46915 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47239 * 240.00444 * 3 2 1 6 6 H 1.48492 * 109.47004 * 120.00087 * 3 2 1 7 7 C 1.38811 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99772 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99988 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.32280 * 34.64829 * 10 9 7 12 12 C 1.53032 * 109.32428 * 154.11308 * 10 9 7 13 13 C 1.53968 * 108.82720 * 175.67725 * 12 10 9 14 14 H 1.09007 * 113.66986 * 168.56010 * 13 12 10 15 15 C 1.55431 * 106.41770 * 293.82330 * 13 12 10 16 16 C 1.55170 * 100.34771 * 73.37652 * 15 13 12 17 17 H 1.09000 * 113.04696 * 162.98776 * 16 15 13 18 18 C 1.52986 * 109.32884 * 275.00265 * 10 9 7 19 19 N 1.47791 * 104.25687 * 40.55388 * 16 15 13 20 20 C 1.34774 * 125.85318 * 153.55727 * 19 16 15 21 21 O 1.21650 * 120.00283 * 354.25065 * 20 19 16 22 22 C 1.47058 * 119.99435 * 174.24627 * 20 19 16 23 23 C 1.37601 * 119.93453 * 7.05960 * 22 20 19 24 24 C 1.39937 * 120.01667 * 179.73084 * 23 22 20 25 25 C 1.36221 * 119.91621 * 0.55846 * 24 23 22 26 26 C 1.40923 * 119.79969 * 359.71418 * 25 24 23 27 27 N 1.32572 * 132.18770 * 180.02562 * 26 25 24 28 28 C 1.33232 * 109.13817 * 179.97438 * 27 26 25 29 29 C 1.35452 * 108.58223 * 0.02562 * 28 27 26 30 30 N 1.36253 * 107.17334 * 359.97438 * 29 28 27 31 31 C 1.47076 * 108.28632 * 333.53095 * 19 16 15 32 32 H 0.97007 * 120.00373 * 179.97438 * 1 2 3 33 33 H 0.97003 * 119.99803 * 0.02562 * 9 7 2 34 34 H 1.08990 * 109.58172 * 295.48296 * 12 10 9 35 35 H 1.09007 * 109.57551 * 55.87795 * 12 10 9 36 36 H 1.08996 * 111.23532 * 315.60176 * 15 13 12 37 37 H 1.09003 * 111.23381 * 191.14903 * 15 13 12 38 38 H 1.09001 * 109.53713 * 304.53052 * 18 10 9 39 39 H 1.09002 * 109.53442 * 64.67706 * 18 10 9 40 40 H 1.08000 * 119.98952 * 0.02562 * 23 22 20 41 41 H 1.07991 * 120.04172 * 180.27490 * 24 23 22 42 42 H 1.07990 * 120.09796 * 179.73347 * 25 24 23 43 43 H 1.08002 * 125.71002 * 179.97438 * 28 27 26 44 44 H 1.08000 * 126.41542 * 179.97438 * 29 28 27 45 45 H 1.09004 * 109.97340 * 120.45660 * 31 19 16 46 46 H 1.08994 * 109.98298 * 241.74337 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1038 1.6966 -1.2125 6 1 3.1038 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9713 -3.5459 0.5843 12 6 1.1862 -4.7449 0.6300 13 6 1.9219 -6.0934 0.5259 14 1 1.4681 -6.8865 1.1203 15 6 2.0032 -6.4338 -0.9885 16 6 3.0857 -5.4197 -1.4444 17 1 3.5213 -5.6670 -2.4125 18 6 2.4203 -4.0323 -1.4387 19 7 4.0840 -5.4387 -0.3548 20 6 5.3933 -5.1438 -0.4786 21 8 5.8673 -4.9298 -1.5783 22 6 6.2487 -5.0807 0.7159 23 6 5.7489 -5.4635 1.9395 24 6 6.5632 -5.4095 3.0763 25 6 7.8472 -4.9669 2.9718 26 6 8.3516 -4.5709 1.7169 27 7 9.5361 -4.1114 1.3382 28 6 9.5152 -3.8785 0.0265 29 6 8.2871 -4.1957 -0.4487 30 7 7.5472 -4.6330 0.6086 31 6 3.4035 -5.8338 0.8878 32 1 -0.4851 -0.8401 -0.0004 33 1 0.3556 -2.3880 -0.0005 34 1 1.0062 -4.5070 1.6782 35 1 0.2362 -4.8051 0.0987 36 1 1.0521 -6.2466 -1.4868 37 1 2.3333 -7.4607 -1.1452 38 1 1.5164 -4.0590 -2.0471 39 1 3.1114 -3.2938 -1.8452 40 1 4.7294 -5.8101 2.0216 41 1 6.1727 -5.7139 4.0360 42 1 8.4768 -4.9199 3.8479 43 1 10.3394 -3.4995 -0.5596 44 1 7.9563 -4.1168 -1.4737 45 1 3.8543 -6.7428 1.2863 46 1 3.4724 -5.0309 1.6217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094962950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:47 Heat of formation + Delta-G solvation = 87.878022 kcal Electronic energy + Delta-G solvation = -30521.788124 eV Core-core repulsion = 26606.405119 eV Total energy + Delta-G solvation = -3915.383005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.96703 -42.31902 -39.80469 -38.27762 -36.94155 -34.65030 -34.62034 -32.93243 -32.66290 -30.87215 -29.89118 -29.29929 -27.55087 -25.77050 -25.52691 -23.98120 -23.54489 -22.71510 -22.65878 -21.00458 -20.33127 -19.49662 -18.95663 -18.65057 -17.64134 -17.50390 -16.97775 -16.81150 -16.51784 -16.25168 -15.93148 -15.72528 -15.40652 -15.23768 -14.70617 -14.62307 -14.44096 -14.18232 -13.86888 -13.61047 -13.35382 -13.24224 -13.19539 -12.99050 -12.87558 -12.82369 -12.73862 -12.14007 -12.11586 -11.98685 -11.64977 -11.52686 -11.44678 -11.38607 -11.16034 -11.00297 -10.90089 -9.98501 -9.91705 -9.16110 -8.98610 -8.45370 -5.38374 -0.82006 0.20639 1.10526 1.34741 1.48655 1.56298 1.73891 1.87929 1.91841 2.44550 2.60813 2.96915 3.21463 3.30490 3.33399 3.48979 3.52948 3.58402 3.78796 3.93808 3.98649 4.07942 4.15175 4.22751 4.27984 4.34819 4.35165 4.42282 4.42846 4.50334 4.57494 4.69736 4.74089 4.82601 4.90210 4.94310 5.01330 5.03691 5.15363 5.17844 5.26606 5.37637 5.39644 5.45245 5.51248 5.52184 5.83360 6.21225 6.46151 6.67739 6.73741 7.05704 7.96393 8.05320 9.06956 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009557 B = 0.004335 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.973142 B = 6456.807848 C = 8008.037158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.095 4.095 3 Si 1.115 2.885 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.326 4.326 8 H 0.044 0.956 9 N -0.747 5.747 10 C 0.180 3.820 11 H 0.031 0.969 12 C -0.117 4.117 13 C -0.075 4.075 14 H 0.158 0.842 15 C -0.114 4.114 16 C 0.136 3.864 17 H 0.086 0.914 18 C -0.136 4.136 19 N -0.590 5.590 20 C 0.567 3.433 21 O -0.578 6.578 22 C -0.004 4.004 23 C -0.101 4.101 24 C -0.101 4.101 25 C -0.057 4.057 26 C 0.185 3.815 27 N -0.514 5.514 28 C 0.023 3.977 29 C -0.099 4.099 30 N -0.346 5.346 31 C 0.069 3.931 32 H 0.248 0.752 33 H 0.362 0.638 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.066 0.934 39 H 0.008 0.992 40 H 0.217 0.783 41 H 0.204 0.796 42 H 0.183 0.817 43 H 0.209 0.791 44 H 0.179 0.821 45 H 0.127 0.873 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.810 -21.354 7.568 23.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.287 4.287 3 Si 0.941 3.059 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.458 4.458 8 H 0.062 0.938 9 N -0.388 5.388 10 C 0.072 3.928 11 H 0.049 0.951 12 C -0.155 4.155 13 C -0.094 4.094 14 H 0.176 0.824 15 C -0.151 4.151 16 C 0.033 3.967 17 H 0.104 0.896 18 C -0.178 4.178 19 N -0.321 5.321 20 C 0.356 3.644 21 O -0.460 6.460 22 C -0.110 4.110 23 C -0.121 4.121 24 C -0.124 4.124 25 C -0.077 4.077 26 C -0.057 4.057 27 N -0.235 5.235 28 C -0.129 4.129 29 C -0.232 4.232 30 N -0.018 5.018 31 C -0.052 4.052 32 H 0.058 0.942 33 H 0.195 0.805 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.084 0.916 39 H 0.027 0.973 40 H 0.232 0.768 41 H 0.221 0.779 42 H 0.201 0.799 43 H 0.226 0.774 44 H 0.196 0.804 45 H 0.145 0.855 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.864 -19.408 7.449 22.599 hybrid contribution -0.392 -0.680 -1.610 1.791 sum 8.472 -20.088 5.839 22.570 Atomic orbital electron populations 1.70984 1.06733 1.28085 1.55956 1.26880 0.97169 1.03945 1.00724 0.82779 0.73622 0.72791 0.76747 1.20904 1.21603 1.20601 1.20127 0.91264 0.87613 1.46779 0.93775 1.42606 1.04657 1.01689 1.89891 1.20447 0.94246 0.85261 0.92883 0.95069 1.22083 0.98623 0.93650 1.01178 1.22775 0.92403 0.97253 0.96971 0.82438 1.23070 0.97771 0.98493 0.95815 1.22419 0.87826 0.95654 0.90845 0.89575 1.22669 0.99109 0.95521 1.00463 1.48358 1.05628 1.65394 1.12726 1.17474 0.81730 0.77651 0.87543 1.90765 1.73978 1.52556 1.28674 1.20209 0.84433 1.09385 0.96939 1.23490 1.04610 0.95101 0.88932 1.21642 0.91851 0.98281 1.00604 1.21034 0.97349 0.96088 0.93198 1.21770 0.87649 1.06323 0.89944 1.70618 1.18735 1.20754 1.13402 1.23023 0.96985 1.02001 0.90910 1.23130 0.93661 1.12041 0.94405 1.42681 1.09039 1.39705 1.10333 1.23199 0.94179 1.01681 0.86108 0.94155 0.80519 0.91015 0.91150 0.88506 0.87777 0.91556 0.97320 0.76762 0.77936 0.79949 0.77392 0.80420 0.85542 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.34 13.70 21.65 0.30 -60.05 16 2 C -0.09 -5.60 5.50 84.86 0.47 -5.13 16 3 Si 1.11 54.21 29.92 68.60 2.05 56.26 16 4 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 7 C -0.33 -18.78 9.92 84.03 0.83 -17.95 16 8 H 0.04 2.64 7.83 -2.91 -0.02 2.62 16 9 N -0.75 -36.67 5.10 -322.92 -1.65 -38.32 16 10 C 0.18 6.58 2.39 45.00 0.11 6.69 16 11 H 0.03 1.25 5.88 -2.39 -0.01 1.23 16 12 C -0.12 -2.80 4.96 30.93 0.15 -2.65 16 13 C -0.08 -1.01 4.33 -9.05 -0.04 -1.05 16 14 H 0.16 0.74 8.14 -2.38 -0.02 0.72 16 15 C -0.11 -1.77 6.18 32.17 0.20 -1.57 16 16 C 0.14 3.58 4.01 45.78 0.18 3.77 16 17 H 0.09 2.47 7.97 -2.39 -0.02 2.46 16 18 C -0.14 -4.91 5.29 30.89 0.16 -4.75 16 19 N -0.59 -15.08 2.36 -811.21 -1.91 -17.00 16 20 C 0.57 18.34 7.80 86.56 0.68 19.01 16 21 O -0.58 -23.19 14.89 -4.19 -0.06 -23.25 16 22 C 0.00 -0.11 6.78 40.37 0.27 0.16 16 23 C -0.10 -1.80 8.64 22.53 0.19 -1.60 16 24 C -0.10 -1.33 10.04 22.21 0.22 -1.11 16 25 C -0.06 -1.07 10.09 22.46 0.23 -0.84 16 26 C 0.18 5.36 7.80 134.10 1.05 6.41 16 27 N -0.51 -16.19 11.31 -194.28 -2.20 -18.39 16 28 C 0.02 0.67 11.83 83.84 0.99 1.66 16 29 C -0.10 -3.26 10.80 83.36 0.90 -2.36 16 30 N -0.35 -11.05 2.97 -339.77 -1.01 -12.06 16 31 C 0.07 1.06 3.59 86.85 0.31 1.37 16 32 H 0.25 15.12 6.78 -92.70 -0.63 14.49 16 33 H 0.36 18.20 6.63 -92.71 -0.62 17.59 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 1.69 7.97 -2.38 -0.02 1.67 16 36 H 0.10 1.47 7.75 -2.39 -0.02 1.45 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 38 H 0.07 2.36 8.00 -2.39 -0.02 2.34 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 40 H 0.22 2.35 2.64 -11.66 -0.03 2.31 16 41 H 0.20 0.58 8.06 -2.92 -0.02 0.56 16 42 H 0.18 2.28 8.06 -2.92 -0.02 2.25 16 43 H 0.21 4.50 8.06 -2.91 -0.02 4.47 16 44 H 0.18 6.10 6.69 -2.91 -0.02 6.08 16 45 H 0.13 0.86 6.77 -2.39 -0.02 0.84 16 46 H 0.09 1.45 5.39 -2.39 -0.01 1.44 16 Total: -1.00 -88.07 358.54 2.97 -85.10 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.54 Total: 27.63 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 6.91 Total: 0.07 kcal Atomic # 7 Polarization: -139.35 SS G_CDS: -6.47 Total: -145.82 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.06 Total: -23.25 kcal Atomic # 14 Polarization: 54.21 SS G_CDS: 2.05 Total: 56.26 kcal Total: -88.07 2.97 -85.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094962950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.981 kcal (2) G-P(sol) polarization free energy of solvation -88.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds