Wall clock time and date at job start Sat Apr 11 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00350 * 2 1 4 4 H 1.48500 * 109.47049 * 270.00065 * 3 2 1 5 5 H 1.48500 * 109.47024 * 29.99707 * 3 2 1 6 6 H 1.48500 * 109.47348 * 150.00026 * 3 2 1 7 7 C 1.38818 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00353 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99502 * 0.02562 * 7 2 1 10 10 C 1.50229 * 130.84204 * 0.02562 * 9 7 2 11 11 H 1.09004 * 116.45672 * 359.97438 * 10 9 7 12 12 C 1.55842 * 101.05443 * 233.96604 * 10 9 7 13 13 C 1.54855 * 103.44423 * 327.06541 * 12 10 9 14 14 C 1.50446 * 130.70492 * 179.97438 * 9 7 2 15 15 H 1.08994 * 116.60583 * 359.90616 * 14 9 7 16 16 C 1.55850 * 100.95397 * 233.85911 * 14 9 7 17 17 H 1.08993 * 110.62763 * 85.83126 * 16 14 9 18 18 N 1.46497 * 110.62340 * 208.69127 * 16 14 9 19 19 C 1.34773 * 120.00153 * 270.16077 * 18 16 14 20 20 O 1.21279 * 119.99896 * 0.02562 * 19 18 16 21 21 C 1.50706 * 120.00345 * 180.02562 * 19 18 16 22 22 C 1.50697 * 109.47153 * 180.02562 * 21 19 18 23 23 C 1.35103 * 125.68697 * 125.00000 * 22 21 19 24 24 N 1.36838 * 107.17790 * 179.97438 * 23 22 21 25 25 C 1.36485 * 132.57010 * 180.02562 * 24 23 22 26 26 C 1.34944 * 120.61177 * 179.97438 * 25 24 23 27 27 C 1.40471 * 120.30068 * 0.04648 * 26 25 24 28 28 C 1.36020 * 119.69351 * 0.23137 * 27 26 25 29 29 C 1.37078 * 107.00215 * 0.02562 * 24 23 22 30 30 N 1.32555 * 108.03351 * 359.97438 * 29 24 23 31 31 C 1.54850 * 103.58801 * 327.25861 * 16 14 9 32 32 H 0.96999 * 119.99756 * 0.02562 * 1 2 3 33 33 H 1.09003 * 110.62476 * 85.54794 * 12 10 9 34 34 H 1.08994 * 110.62861 * 208.57323 * 12 10 9 35 35 H 1.09001 * 110.62559 * 118.48602 * 13 12 10 36 36 H 1.08994 * 110.62218 * 241.50884 * 13 12 10 37 37 H 0.97003 * 120.00040 * 90.16407 * 18 16 14 38 38 H 1.09001 * 109.47040 * 60.00030 * 21 19 18 39 39 H 1.08996 * 109.46835 * 300.00285 * 21 19 18 40 40 H 1.08000 * 126.40842 * 359.95907 * 23 22 21 41 41 H 1.08007 * 119.68755 * 359.97438 * 25 24 23 42 42 H 1.08001 * 119.85017 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.15094 * 179.97438 * 27 26 25 44 44 H 1.08004 * 120.33771 * 179.74933 * 28 27 26 45 45 H 1.09003 * 110.62622 * 118.40879 * 31 16 14 46 46 H 1.08997 * 110.62938 * 241.27137 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1500 -2.6706 -0.0005 11 1 -0.8105 -1.8034 -0.0009 12 6 -0.2753 -3.6099 1.2367 13 6 1.0658 -4.3842 1.2381 14 6 1.8225 -3.8081 0.0005 15 1 2.9036 -3.9469 -0.0011 16 6 1.0686 -4.3858 -1.2351 17 1 1.6264 -4.1907 -2.1510 18 7 0.8346 -5.8226 -1.0715 19 6 1.7498 -6.7088 -1.5111 20 8 2.7674 -6.3168 -2.0418 21 6 1.5089 -8.1870 -1.3433 22 6 2.6742 -8.9538 -1.9133 23 6 3.4126 -9.8720 -1.2522 24 7 4.3646 -10.3280 -2.1230 25 6 5.3655 -11.2475 -1.9981 26 6 6.1839 -11.5176 -3.0365 27 6 6.0161 -10.8531 -4.2627 28 6 5.0261 -9.9303 -4.3990 29 6 4.1759 -9.6637 -3.3071 30 7 3.1490 -8.8393 -3.1560 31 6 -0.2724 -3.6115 -1.2377 32 1 -0.4850 0.8401 -0.0004 33 1 -0.3833 -3.0274 2.1517 34 1 -1.1141 -4.2951 1.1152 35 1 1.6228 -4.1857 2.1538 36 1 0.8919 -5.4534 1.1173 37 1 0.0208 -6.1362 -0.6467 38 1 0.5963 -8.4684 -1.8688 39 1 1.4044 -8.4201 -0.2836 40 1 3.2770 -10.1869 -0.2281 41 1 5.5038 -11.7636 -1.0595 42 1 6.9717 -12.2478 -2.9243 43 1 6.6727 -11.0708 -5.0920 44 1 4.8903 -9.4103 -5.3358 45 1 -0.3784 -3.0301 -2.1537 46 1 -1.1118 -4.2968 -1.1201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095629146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:05 Heat of formation + Delta-G solvation = 110.421873 kcal Electronic energy + Delta-G solvation = -28963.530770 eV Core-core repulsion = 25049.125340 eV Total energy + Delta-G solvation = -3914.405431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.92808 -39.87030 -38.37214 -37.41178 -33.84118 -33.72433 -32.36002 -31.93747 -29.59113 -29.19245 -28.95005 -28.18775 -26.97043 -24.17151 -23.54196 -22.86093 -21.70924 -21.02470 -20.03578 -19.41906 -18.46998 -17.99000 -17.15036 -16.99444 -16.63292 -15.99496 -15.86951 -15.19172 -15.07328 -14.80401 -14.70599 -14.32474 -14.15447 -13.86328 -13.44158 -13.05951 -12.75339 -12.39409 -12.19835 -12.06085 -11.99171 -11.70994 -11.62832 -11.42198 -11.20042 -10.99001 -10.86089 -10.83457 -10.78461 -10.17268 -10.08796 -10.04628 -9.79199 -9.49562 -9.26704 -9.18502 -8.88286 -8.83250 -8.37315 -8.00952 -6.85822 -5.68407 -3.05790 0.52982 1.08532 2.40689 2.66340 3.06755 3.35384 3.43091 3.48028 3.49455 3.69192 3.99976 4.18093 4.46053 4.50189 4.56427 4.81433 4.95173 5.03728 5.17285 5.24496 5.27847 5.38265 5.43493 5.53854 5.62622 5.67133 5.79913 5.87931 5.90740 5.92390 6.03131 6.13759 6.18399 6.26168 6.37654 6.40075 6.46391 6.60312 6.65707 6.78905 6.88891 6.90680 7.02966 7.07346 7.34545 7.57746 7.81130 7.83449 7.98861 8.20574 8.70374 9.15303 9.77457 10.58425 11.41463 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020088 B = 0.002331 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.529054 B =12007.849610 C =12694.533858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.916 3.084 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.208 4.208 8 H 0.078 0.922 9 N -0.590 5.590 10 C 0.157 3.843 11 H 0.152 0.848 12 C -0.137 4.137 13 C -0.130 4.130 14 C 0.128 3.872 15 H 0.084 0.916 16 C 0.130 3.870 17 H 0.082 0.918 18 N -0.716 5.716 19 C 0.511 3.489 20 O -0.523 6.523 21 C -0.062 4.062 22 C 0.084 3.916 23 C -0.095 4.095 24 N -0.363 5.363 25 C 0.055 3.945 26 C -0.146 4.146 27 C -0.110 4.110 28 C -0.072 4.072 29 C 0.219 3.781 30 N -0.458 5.458 31 C -0.141 4.141 32 H 0.253 0.747 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.394 0.606 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.182 0.818 41 H 0.161 0.839 42 H 0.148 0.852 43 H 0.141 0.859 44 H 0.150 0.850 45 H 0.064 0.936 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.717 -26.234 -2.401 26.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.337 4.337 8 H 0.096 0.904 9 N -0.310 5.310 10 C 0.050 3.950 11 H 0.169 0.831 12 C -0.177 4.177 13 C -0.169 4.169 14 C 0.019 3.981 15 H 0.102 0.898 16 C 0.024 3.976 17 H 0.100 0.900 18 N -0.368 5.368 19 C 0.295 3.705 20 O -0.397 6.397 21 C -0.103 4.103 22 C -0.050 4.050 23 C -0.227 4.227 24 N -0.035 5.035 25 C -0.067 4.067 26 C -0.167 4.167 27 C -0.134 4.134 28 C -0.092 4.092 29 C -0.025 4.025 30 N -0.177 5.177 31 C -0.181 4.181 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.228 0.772 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.199 0.801 41 H 0.178 0.822 42 H 0.166 0.834 43 H 0.158 0.842 44 H 0.168 0.832 45 H 0.083 0.917 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.160 -25.055 -3.318 25.795 hybrid contribution 0.476 0.024 0.953 1.066 sum 5.636 -25.032 -2.365 25.767 Atomic orbital electron populations 1.69467 1.04963 1.24906 1.57916 1.24692 0.95654 0.97461 1.03031 0.86036 0.78486 0.83227 0.77557 1.21673 1.21717 1.20808 1.19072 0.90366 0.81938 1.42285 0.90379 1.46503 1.01544 0.98810 1.84188 1.23698 0.87594 0.95034 0.88668 0.83091 1.23050 0.95117 0.98203 1.01280 1.22942 0.97582 0.97555 0.98863 1.23271 0.96097 0.86037 0.92740 0.89804 1.22578 0.97882 0.77031 1.00145 0.90001 1.46202 1.22295 1.07099 1.61218 1.20206 0.84014 0.87510 0.78776 1.90744 1.26904 1.80220 1.41876 1.20032 0.96032 0.92017 1.02249 1.20109 0.97926 0.96331 0.90641 1.22321 0.96179 1.06466 0.97691 1.42801 1.21291 1.26902 1.12550 1.21580 0.90049 0.93637 1.01480 1.20774 1.00608 1.02598 0.92722 1.20997 0.98169 0.96301 0.97965 1.20318 0.93539 0.98465 0.96879 1.21024 0.98509 0.95449 0.87490 1.70680 1.09200 1.19355 1.18492 1.23309 0.94133 0.98436 1.02241 0.93632 0.92732 0.93626 0.93220 0.93042 0.77233 0.87489 0.87528 0.80052 0.82207 0.83407 0.84162 0.83238 0.91748 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.57 10.48 55.49 0.58 -25.99 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.92 22.44 29.55 -169.99 -5.02 17.41 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.21 -5.88 10.58 -15.05 -0.16 -6.04 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.59 -15.01 2.98 -145.47 -0.43 -15.44 16 10 C 0.16 3.57 4.69 -62.77 -0.29 3.28 16 11 H 0.15 3.93 5.57 -51.93 -0.29 3.64 16 12 C -0.14 -2.65 6.44 -24.24 -0.16 -2.80 16 13 C -0.13 -2.40 6.32 -24.10 -0.15 -2.55 16 14 C 0.13 2.75 5.39 -62.55 -0.34 2.41 16 15 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 16 C 0.13 2.52 3.13 -65.44 -0.20 2.31 16 17 H 0.08 1.84 7.58 -51.93 -0.39 1.44 16 18 N -0.72 -10.81 3.70 -51.40 -0.19 -11.00 16 19 C 0.51 8.19 7.82 -10.98 -0.09 8.10 16 20 O -0.52 -11.06 15.22 5.56 0.08 -10.97 16 21 C -0.06 -0.71 6.26 -29.03 -0.18 -0.89 16 22 C 0.08 1.16 5.85 -82.98 -0.49 0.67 16 23 C -0.10 -1.07 11.63 -16.43 -0.19 -1.26 16 24 N -0.36 -4.13 2.95 -62.66 -0.18 -4.32 16 25 C 0.05 0.42 10.95 -16.65 -0.18 0.24 16 26 C -0.15 -0.92 9.98 -39.91 -0.40 -1.32 16 27 C -0.11 -0.81 10.07 -39.54 -0.40 -1.21 16 28 C -0.07 -0.75 10.11 -39.36 -0.40 -1.15 16 29 C 0.22 3.01 7.81 -156.05 -1.22 1.79 16 30 N -0.46 -7.51 10.67 -9.01 -0.10 -7.61 16 31 C -0.14 -2.75 6.20 -24.20 -0.15 -2.90 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.05 0.73 7.82 -51.93 -0.41 0.33 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.79 6.38 -51.93 -0.33 0.46 16 37 H 0.39 4.68 7.91 -40.82 -0.32 4.36 16 38 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.11 0.83 8.10 -51.93 -0.42 0.41 16 40 H 0.18 1.32 8.06 -52.49 -0.42 0.89 16 41 H 0.16 0.68 8.06 -52.48 -0.42 0.25 16 42 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 43 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.15 1.38 8.06 -52.48 -0.42 0.95 16 45 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.05 0.88 7.40 -51.93 -0.38 0.50 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -36.73 373.50 -11.05 -47.78 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.32 Total: 6.32 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -5.09 Total: -1.79 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -0.32 Total: -64.37 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.73 -11.05 -47.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095629146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.202 kcal (2) G-P(sol) polarization free energy of solvation -36.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds