Wall clock time and date at job start Sat Apr 11 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00350 * 2 1 4 4 H 1.48500 * 109.47049 * 270.00065 * 3 2 1 5 5 H 1.48500 * 109.47024 * 29.99707 * 3 2 1 6 6 H 1.48500 * 109.47348 * 150.00026 * 3 2 1 7 7 C 1.38818 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00353 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99502 * 0.02562 * 7 2 1 10 10 C 1.50229 * 130.84204 * 0.02562 * 9 7 2 11 11 H 1.09004 * 116.45672 * 359.97438 * 10 9 7 12 12 C 1.55842 * 101.05443 * 233.96604 * 10 9 7 13 13 C 1.54855 * 103.44423 * 327.06541 * 12 10 9 14 14 C 1.50446 * 130.70492 * 179.97438 * 9 7 2 15 15 H 1.08994 * 116.60583 * 359.90616 * 14 9 7 16 16 C 1.55850 * 100.95397 * 233.85911 * 14 9 7 17 17 H 1.08993 * 110.62763 * 85.83126 * 16 14 9 18 18 N 1.46497 * 110.62340 * 208.69127 * 16 14 9 19 19 C 1.34773 * 120.00153 * 270.16077 * 18 16 14 20 20 O 1.21279 * 119.99896 * 0.02562 * 19 18 16 21 21 C 1.50706 * 120.00345 * 180.02562 * 19 18 16 22 22 C 1.50697 * 109.47153 * 180.02562 * 21 19 18 23 23 C 1.35103 * 125.68697 * 125.00000 * 22 21 19 24 24 N 1.36838 * 107.17790 * 179.97438 * 23 22 21 25 25 C 1.36485 * 132.57010 * 180.02562 * 24 23 22 26 26 C 1.34944 * 120.61177 * 179.97438 * 25 24 23 27 27 C 1.40471 * 120.30068 * 0.04648 * 26 25 24 28 28 C 1.36020 * 119.69351 * 0.23137 * 27 26 25 29 29 C 1.37078 * 107.00215 * 0.02562 * 24 23 22 30 30 N 1.32555 * 108.03351 * 359.97438 * 29 24 23 31 31 C 1.54850 * 103.58801 * 327.25861 * 16 14 9 32 32 H 0.96999 * 119.99756 * 0.02562 * 1 2 3 33 33 H 1.09003 * 110.62476 * 85.54794 * 12 10 9 34 34 H 1.08994 * 110.62861 * 208.57323 * 12 10 9 35 35 H 1.09001 * 110.62559 * 118.48602 * 13 12 10 36 36 H 1.08994 * 110.62218 * 241.50884 * 13 12 10 37 37 H 0.97003 * 120.00040 * 90.16407 * 18 16 14 38 38 H 1.09001 * 109.47040 * 60.00030 * 21 19 18 39 39 H 1.08996 * 109.46835 * 300.00285 * 21 19 18 40 40 H 1.08000 * 126.40842 * 359.95907 * 23 22 21 41 41 H 1.08007 * 119.68755 * 359.97438 * 25 24 23 42 42 H 1.08001 * 119.85017 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.15094 * 179.97438 * 27 26 25 44 44 H 1.08004 * 120.33771 * 179.74933 * 28 27 26 45 45 H 1.09003 * 110.62622 * 118.40879 * 31 16 14 46 46 H 1.08997 * 110.62938 * 241.27137 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1500 -2.6706 -0.0005 11 1 -0.8105 -1.8034 -0.0009 12 6 -0.2753 -3.6099 1.2367 13 6 1.0658 -4.3842 1.2381 14 6 1.8225 -3.8081 0.0005 15 1 2.9036 -3.9469 -0.0011 16 6 1.0686 -4.3858 -1.2351 17 1 1.6264 -4.1907 -2.1510 18 7 0.8346 -5.8226 -1.0715 19 6 1.7498 -6.7088 -1.5111 20 8 2.7674 -6.3168 -2.0418 21 6 1.5089 -8.1870 -1.3433 22 6 2.6742 -8.9538 -1.9133 23 6 3.4126 -9.8720 -1.2522 24 7 4.3646 -10.3280 -2.1230 25 6 5.3655 -11.2475 -1.9981 26 6 6.1839 -11.5176 -3.0365 27 6 6.0161 -10.8531 -4.2627 28 6 5.0261 -9.9303 -4.3990 29 6 4.1759 -9.6637 -3.3071 30 7 3.1490 -8.8393 -3.1560 31 6 -0.2724 -3.6115 -1.2377 32 1 -0.4850 0.8401 -0.0004 33 1 -0.3833 -3.0274 2.1517 34 1 -1.1141 -4.2951 1.1152 35 1 1.6228 -4.1857 2.1538 36 1 0.8919 -5.4534 1.1173 37 1 0.0208 -6.1362 -0.6467 38 1 0.5963 -8.4684 -1.8688 39 1 1.4044 -8.4201 -0.2836 40 1 3.2770 -10.1869 -0.2281 41 1 5.5038 -11.7636 -1.0595 42 1 6.9717 -12.2478 -2.9243 43 1 6.6727 -11.0708 -5.0920 44 1 4.8903 -9.4103 -5.3358 45 1 -0.3784 -3.0301 -2.1537 46 1 -1.1118 -4.2968 -1.1201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095629146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:04 Heat of formation + Delta-G solvation = 87.035049 kcal Electronic energy + Delta-G solvation = -28964.544899 eV Core-core repulsion = 25049.125340 eV Total energy + Delta-G solvation = -3915.419559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.69093 -41.38240 -39.75574 -38.20600 -35.37667 -34.54246 -34.19270 -32.88643 -30.99343 -30.76255 -30.18260 -29.41256 -28.22809 -26.09165 -24.28279 -23.59605 -23.01323 -22.36442 -21.44612 -20.90020 -20.09482 -18.97923 -18.66409 -18.00193 -17.62836 -16.92182 -16.83979 -16.70519 -16.42079 -16.23246 -15.92941 -15.55521 -15.34454 -14.92852 -14.79671 -14.15582 -13.97894 -13.78786 -13.51089 -13.34498 -13.17378 -13.02876 -12.85041 -12.77858 -12.59489 -12.56502 -12.43440 -12.33160 -11.99844 -11.95259 -11.89926 -11.54408 -11.16359 -11.03052 -10.98130 -10.75104 -10.69111 -9.90941 -9.60663 -8.84762 -8.74693 -7.80440 -5.19213 -0.10380 0.38603 1.44007 1.46024 1.53918 1.71514 1.83440 1.87100 2.38066 2.52390 2.67139 3.28128 3.32963 3.51004 3.55682 3.86463 3.94457 3.99023 4.10089 4.15550 4.19719 4.23639 4.33092 4.40827 4.47025 4.50940 4.58607 4.63335 4.64856 4.74314 4.84951 4.88995 4.99475 5.00861 5.09959 5.17102 5.17123 5.28696 5.31262 5.35275 5.48611 5.58556 5.63793 5.68402 5.80811 5.90934 6.22516 6.26866 6.78414 7.01905 7.05693 7.50366 7.68432 8.55109 9.26587 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020088 B = 0.002331 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.529054 B =12007.849610 C =12694.533858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.064 4.064 3 Si 0.976 3.024 4 H -0.290 1.290 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.226 4.226 8 H 0.068 0.932 9 N -0.619 5.619 10 C 0.140 3.860 11 H 0.118 0.882 12 C -0.124 4.124 13 C -0.113 4.113 14 C 0.116 3.884 15 H 0.060 0.940 16 C 0.148 3.852 17 H 0.040 0.960 18 N -0.699 5.699 19 C 0.508 3.492 20 O -0.581 6.581 21 C -0.049 4.049 22 C 0.046 3.954 23 C -0.091 4.091 24 N -0.369 5.369 25 C 0.044 3.956 26 C -0.143 4.143 27 C -0.087 4.087 28 C -0.117 4.117 29 C 0.191 3.809 30 N -0.523 5.523 31 C -0.127 4.127 32 H 0.249 0.751 33 H 0.035 0.965 34 H 0.091 0.909 35 H 0.041 0.959 36 H 0.094 0.906 37 H 0.416 0.584 38 H 0.129 0.871 39 H 0.153 0.847 40 H 0.222 0.778 41 H 0.199 0.801 42 H 0.191 0.809 43 H 0.173 0.827 44 H 0.144 0.856 45 H 0.039 0.961 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.901 -30.192 -0.793 30.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.257 4.257 3 Si 0.805 3.195 4 H -0.218 1.218 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.356 4.356 8 H 0.086 0.914 9 N -0.341 5.341 10 C 0.035 3.965 11 H 0.136 0.864 12 C -0.163 4.163 13 C -0.152 4.152 14 C 0.009 3.991 15 H 0.078 0.922 16 C 0.041 3.959 17 H 0.059 0.941 18 N -0.353 5.353 19 C 0.295 3.705 20 O -0.460 6.460 21 C -0.090 4.090 22 C -0.087 4.087 23 C -0.222 4.222 24 N -0.040 5.040 25 C -0.077 4.077 26 C -0.163 4.163 27 C -0.111 4.111 28 C -0.137 4.137 29 C -0.053 4.053 30 N -0.243 5.243 31 C -0.166 4.166 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.060 0.940 36 H 0.112 0.888 37 H 0.255 0.745 38 H 0.147 0.853 39 H 0.170 0.830 40 H 0.239 0.761 41 H 0.216 0.784 42 H 0.208 0.792 43 H 0.190 0.810 44 H 0.162 0.838 45 H 0.058 0.942 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.309 -29.080 -1.685 29.608 hybrid contribution 0.573 1.131 0.372 1.321 sum 5.881 -27.949 -1.313 28.591 Atomic orbital electron populations 1.69692 1.05811 1.25073 1.58696 1.25415 0.96611 1.00150 1.03478 0.85113 0.77560 0.79625 0.77240 1.21787 1.21445 1.20178 1.19294 0.90394 0.83780 1.42084 0.91448 1.46779 1.03106 0.99427 1.84832 1.23633 0.85676 0.95384 0.91843 0.86427 1.22941 0.97068 0.97974 0.98364 1.22842 0.96293 0.99609 0.96497 1.23397 0.95522 0.84813 0.95413 0.92153 1.21970 0.96940 0.79728 0.97279 0.94143 1.45916 1.23232 1.04915 1.61236 1.21133 0.82781 0.89538 0.77048 1.90732 1.29509 1.81464 1.44271 1.20116 0.96233 0.87394 1.05208 1.20609 0.99523 0.98026 0.90565 1.22895 0.95121 1.05417 0.98807 1.43039 1.22011 1.27223 1.11775 1.22421 0.88962 0.92749 1.03605 1.21366 1.00882 1.02443 0.91592 1.21492 0.96347 0.93777 0.99459 1.20519 0.95496 1.01109 0.96615 1.21411 0.98761 0.95907 0.89198 1.70572 1.11408 1.21714 1.20628 1.23147 0.95575 0.98272 0.99627 0.94110 0.94585 0.89015 0.94001 0.88803 0.74535 0.85295 0.82955 0.76133 0.78430 0.79204 0.80993 0.83798 0.94206 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.07 10.48 21.65 0.23 -55.84 16 2 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 3 Si 0.98 47.56 29.55 68.60 2.03 49.58 16 4 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 7 C -0.23 -13.32 10.58 84.03 0.89 -12.44 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 9 N -0.62 -32.60 2.98 -614.17 -1.83 -34.43 16 10 C 0.14 6.45 4.69 46.26 0.22 6.66 16 11 H 0.12 6.30 5.57 -2.38 -0.01 6.28 16 12 C -0.12 -4.53 6.44 32.21 0.21 -4.32 16 13 C -0.11 -3.95 6.32 32.30 0.20 -3.75 16 14 C 0.12 5.11 5.39 46.27 0.25 5.36 16 15 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 16 C 0.15 5.80 3.13 46.61 0.15 5.95 16 17 H 0.04 1.92 7.58 -2.39 -0.02 1.90 16 18 N -0.70 -19.68 3.70 -434.92 -1.61 -21.29 16 19 C 0.51 15.84 7.82 87.66 0.69 16.53 16 20 O -0.58 -25.59 15.22 -3.03 -0.05 -25.63 16 21 C -0.05 -1.00 6.26 29.10 0.18 -0.82 16 22 C 0.05 1.22 5.85 41.58 0.24 1.47 16 23 C -0.09 -1.85 11.63 83.19 0.97 -0.89 16 24 N -0.37 -7.85 2.95 -352.16 -1.04 -8.89 16 25 C 0.04 0.53 10.95 83.21 0.91 1.44 16 26 C -0.14 -1.28 9.98 22.06 0.22 -1.06 16 27 C -0.09 -1.10 10.07 22.30 0.22 -0.88 16 28 C -0.12 -2.54 10.11 22.41 0.23 -2.31 16 29 C 0.19 5.40 7.81 134.11 1.05 6.45 16 30 N -0.52 -17.88 10.67 -182.41 -1.95 -19.83 16 31 C -0.13 -4.86 6.20 32.24 0.20 -4.66 16 32 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 2.51 7.82 -2.39 -0.02 2.49 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 2.47 6.38 -2.39 -0.02 2.45 16 37 H 0.42 7.99 7.91 -92.71 -0.73 7.25 16 38 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.15 1.61 8.10 -2.39 -0.02 1.59 16 40 H 0.22 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.20 0.72 8.06 -2.91 -0.02 0.70 16 42 H 0.19 0.08 8.06 -2.91 -0.02 0.06 16 43 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 44 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 45 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.10 2.89 7.40 -2.39 -0.02 2.87 16 Total: -1.00 -90.28 373.50 3.35 -86.93 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.28 Total: 19.91 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 7.29 Total: 9.49 kcal Atomic # 7 Polarization: -134.09 SS G_CDS: -6.20 Total: -140.29 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.05 Total: -25.63 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.58 kcal Total: -90.28 3.35 -86.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095629146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.967 kcal (2) G-P(sol) polarization free energy of solvation -90.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds