Wall clock time and date at job start Sat Apr 11 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00055 * 2 1 4 4 H 1.48495 * 109.47107 * 273.09031 * 3 2 1 5 5 H 1.48497 * 109.46875 * 33.09281 * 3 2 1 6 6 H 1.48502 * 109.46988 * 153.09217 * 3 2 1 7 7 C 1.38818 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00015 * 338.08147 * 7 2 1 9 9 N 1.36934 * 120.00143 * 157.81823 * 7 2 1 10 10 C 1.50236 * 130.84371 * 171.83730 * 9 7 2 11 11 H 1.09009 * 115.85508 * 359.60552 * 10 9 7 12 12 C 1.55840 * 101.05243 * 233.92978 * 10 9 7 13 13 C 1.55483 * 103.32568 * 326.97251 * 12 10 9 14 14 C 1.50243 * 130.83449 * 351.49283 * 9 7 2 15 15 H 1.08998 * 115.86153 * 359.68417 * 14 9 7 16 16 C 1.56859 * 100.58543 * 234.63328 * 14 9 7 17 17 H 1.09001 * 110.56954 * 208.24803 * 16 14 9 18 18 N 1.46498 * 110.90204 * 85.23478 * 16 14 9 19 19 C 1.34777 * 120.00020 * 159.46807 * 18 16 14 20 20 O 1.21283 * 119.99877 * 359.97438 * 19 18 16 21 21 C 1.50694 * 120.00026 * 179.97438 * 19 18 16 22 22 C 1.50703 * 109.47534 * 180.02562 * 21 19 18 23 23 C 1.38543 * 126.21663 * 265.03204 * 22 21 19 24 24 N 1.31486 * 109.00862 * 179.97438 * 23 22 21 25 25 N 1.40039 * 108.91348 * 359.97438 * 24 23 22 26 26 C 1.36539 * 132.43350 * 179.97438 * 25 24 23 27 27 C 1.34929 * 120.66103 * 179.97438 * 26 25 24 28 28 C 1.40478 * 120.43141 * 0.02562 * 27 26 25 29 29 C 1.36055 * 119.59000 * 0.02562 * 28 27 26 30 30 C 1.37137 * 107.44682 * 359.73679 * 25 24 23 31 31 C 1.54851 * 103.35843 * 326.65877 * 16 14 9 32 32 H 0.97000 * 120.00087 * 0.02562 * 1 2 3 33 33 H 1.09000 * 110.62740 * 85.55285 * 12 10 9 34 34 H 1.09002 * 110.62291 * 208.57055 * 12 10 9 35 35 H 1.09006 * 110.60867 * 241.58214 * 13 12 10 36 36 H 1.09003 * 110.88842 * 118.55557 * 13 12 10 37 37 H 0.96995 * 119.99793 * 339.46080 * 18 16 14 38 38 H 1.09002 * 109.47786 * 300.00182 * 21 19 18 39 39 H 1.08998 * 109.47067 * 60.00010 * 21 19 18 40 40 H 1.08007 * 125.49756 * 359.97288 * 23 22 21 41 41 H 1.08005 * 119.66763 * 0.02562 * 26 25 24 42 42 H 1.08001 * 119.78155 * 180.02562 * 27 26 25 43 43 H 1.08001 * 120.20023 * 180.02562 * 28 27 26 44 44 H 1.07997 * 120.38881 * 180.02562 * 29 28 27 45 45 H 1.09002 * 110.63000 * 241.78959 * 31 16 14 46 46 H 1.09000 * 110.62568 * 118.76172 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4323 2.0841 -1.3980 5 1 1.4818 2.6329 0.7644 6 1 3.5789 1.4221 0.6336 7 6 2.0102 -1.2022 -0.0005 8 1 1.5288 -2.1039 0.3482 9 7 3.3036 -1.2459 -0.4483 10 6 4.3203 -2.3512 -0.4082 11 1 3.9934 -3.2812 0.0571 12 6 5.5145 -1.6335 0.2900 13 6 5.3915 -0.1659 -0.2085 14 6 4.1405 -0.2055 -1.1370 15 1 3.6514 0.7504 -1.3244 16 6 4.5848 -0.9945 -2.4178 17 1 5.5463 -0.6290 -2.7784 18 7 3.5699 -0.8973 -3.4698 19 6 3.9058 -1.1319 -4.7538 20 8 5.0483 -1.4230 -5.0383 21 6 2.8617 -1.0325 -5.8360 22 6 3.4906 -1.3396 -7.1706 23 6 3.9887 -0.4140 -8.0732 24 7 4.4588 -1.0502 -9.1235 25 7 4.2812 -2.4267 -8.9375 26 6 4.5887 -3.5083 -9.7121 27 6 4.3057 -4.7587 -9.2914 28 6 3.6883 -4.9681 -8.0471 29 6 3.3748 -3.9003 -7.2644 30 6 3.6831 -2.6028 -7.7161 31 6 4.7101 -2.4533 -1.9137 32 1 -0.4850 0.8400 -0.0004 33 1 5.4117 -1.6833 1.3740 34 1 6.4623 -2.0683 -0.0272 35 1 6.2787 0.1237 -0.7716 36 1 5.2287 0.5158 0.6264 37 1 2.6563 -0.6643 -3.2423 38 1 2.0635 -1.7478 -5.6377 39 1 2.4497 -0.0235 -5.8516 40 1 3.9904 0.6573 -7.9363 41 1 5.0639 -3.3615 -10.6708 42 1 4.5555 -5.6040 -9.9154 43 1 3.4638 -5.9706 -7.7138 44 1 2.9004 -4.0464 -6.3053 45 1 5.7343 -2.8103 -2.0217 46 1 4.0171 -3.1045 -2.4465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097242997.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:07 Heat of formation + Delta-G solvation = 127.060035 kcal Electronic energy + Delta-G solvation = -29644.736939 eV Core-core repulsion = 25731.052993 eV Total energy + Delta-G solvation = -3913.683946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.08270 -39.91718 -38.50606 -37.28415 -33.74478 -33.55225 -32.60586 -30.96417 -30.69764 -29.67660 -29.25205 -28.28739 -26.35718 -24.01922 -23.88980 -22.75406 -21.96444 -20.78558 -20.24066 -19.65232 -18.92422 -17.30577 -17.08614 -16.97049 -16.70195 -16.27471 -15.99147 -15.52414 -15.09921 -14.86093 -14.54123 -14.21797 -13.90717 -13.52475 -13.43371 -13.10235 -13.08192 -12.67728 -12.53084 -12.29833 -11.92224 -11.87116 -11.78887 -11.45620 -11.38063 -11.12787 -11.04081 -10.89341 -10.70490 -10.50937 -10.37839 -10.26272 -9.90082 -9.66054 -9.41347 -9.33051 -9.29982 -8.92342 -8.48437 -7.56247 -7.29785 -5.98316 -3.23214 0.64892 1.00544 2.18381 2.62841 3.05972 3.23085 3.24541 3.41725 3.44224 3.79213 4.12352 4.46691 4.51347 4.57226 4.62160 4.73324 4.89994 5.07137 5.10167 5.19687 5.32830 5.33605 5.38221 5.41742 5.46446 5.61990 5.67035 5.69062 5.76092 5.80283 5.92281 5.93160 5.95763 6.04902 6.12889 6.20530 6.23540 6.25100 6.42281 6.48845 6.50774 6.67117 6.76340 6.79333 6.86262 7.09611 7.32813 7.49638 8.05955 8.25156 8.66217 8.70265 9.58760 10.19623 11.17913 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.003070 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.991122 B = 9118.513494 C = 9517.459792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 0.867 3.133 4 H -0.290 1.290 5 H -0.305 1.305 6 H -0.261 1.261 7 C -0.223 4.223 8 H 0.098 0.902 9 N -0.606 5.606 10 C 0.140 3.860 11 H 0.094 0.906 12 C -0.132 4.132 13 C -0.133 4.133 14 C 0.116 3.884 15 H 0.094 0.906 16 C 0.133 3.867 17 H 0.080 0.920 18 N -0.711 5.711 19 C 0.509 3.491 20 O -0.546 6.546 21 C -0.059 4.059 22 C -0.222 4.222 23 C 0.091 3.909 24 N -0.324 5.324 25 N -0.275 5.275 26 C 0.108 3.892 27 C -0.166 4.166 28 C -0.091 4.091 29 C -0.102 4.102 30 C 0.117 3.883 31 C -0.134 4.134 32 H 0.262 0.738 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.407 0.593 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.189 0.811 41 H 0.165 0.835 42 H 0.152 0.848 43 H 0.140 0.860 44 H 0.145 0.855 45 H 0.061 0.939 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.854 -7.279 -15.229 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.182 4.182 3 Si 0.699 3.301 4 H -0.219 1.219 5 H -0.233 1.233 6 H -0.186 1.186 7 C -0.349 4.349 8 H 0.115 0.885 9 N -0.329 5.329 10 C 0.033 3.967 11 H 0.112 0.888 12 C -0.171 4.171 13 C -0.173 4.173 14 C 0.008 3.992 15 H 0.112 0.888 16 C 0.027 3.973 17 H 0.098 0.902 18 N -0.361 5.361 19 C 0.295 3.705 20 O -0.424 6.424 21 C -0.101 4.101 22 C -0.233 4.233 23 C -0.085 4.085 24 N -0.148 5.148 25 N -0.042 5.042 26 C -0.017 4.017 27 C -0.188 4.188 28 C -0.114 4.114 29 C -0.122 4.122 30 C -0.002 4.002 31 C -0.174 4.174 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.242 0.758 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.206 0.794 41 H 0.182 0.818 42 H 0.170 0.830 43 H 0.157 0.843 44 H 0.163 0.837 45 H 0.080 0.920 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.890 -7.106 -16.504 20.048 hybrid contribution -0.377 1.138 1.004 1.564 sum 8.513 -5.968 -15.500 18.664 Atomic orbital electron populations 1.69823 1.05283 1.26346 1.54183 1.24694 0.95028 0.97023 1.01445 0.87182 0.80435 0.85309 0.77156 1.21862 1.23307 1.18625 1.18656 0.83246 0.95824 1.37196 0.88479 1.46904 1.09828 1.09476 1.66653 1.22956 0.88130 0.92396 0.93218 0.88800 1.23076 0.98142 0.95729 1.00165 1.23127 0.97211 0.97402 0.99523 1.23559 0.91439 0.93410 0.90768 0.88839 1.22595 0.90859 0.96583 0.87306 0.90169 1.46033 1.14028 1.70093 1.05959 1.20651 0.89626 0.76845 0.83372 1.90655 1.21096 1.47962 1.82700 1.19871 0.96915 1.04394 0.88874 1.19253 1.14931 0.89951 0.99198 1.23621 0.94010 1.00380 0.90503 1.77831 1.29677 0.82730 1.24527 1.46099 1.38828 1.06151 1.13138 1.21425 0.99603 0.83887 0.96809 1.20802 1.03966 0.95533 0.98483 1.21125 0.96995 0.99568 0.93665 1.20657 1.01373 0.89063 1.01098 1.19266 0.98157 0.95452 0.87285 1.23316 1.00143 0.96178 0.97806 0.92799 0.92115 0.92396 0.92333 0.91307 0.75772 0.88379 0.88018 0.79388 0.81793 0.83049 0.84260 0.83722 0.92017 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.61 13.97 55.49 0.78 -25.84 16 2 C 0.02 0.43 5.49 -17.43 -0.10 0.33 16 3 Si 0.87 20.96 24.63 -169.99 -4.19 16.77 16 4 H -0.29 -6.81 6.75 56.52 0.38 -6.42 16 5 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.26 -6.03 4.84 56.52 0.27 -5.75 16 7 C -0.22 -5.82 10.94 -15.06 -0.16 -5.99 16 8 H 0.10 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.61 -13.29 2.83 -145.20 -0.41 -13.70 16 10 C 0.14 2.55 5.43 -62.80 -0.34 2.21 16 11 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 12 C -0.13 -2.16 6.49 -23.90 -0.16 -2.32 16 13 C -0.13 -2.36 6.27 -23.89 -0.15 -2.51 16 14 C 0.12 2.31 3.18 -62.23 -0.20 2.11 16 15 H 0.09 2.03 3.48 -51.93 -0.18 1.85 16 16 C 0.13 2.41 2.77 -64.87 -0.18 2.23 16 17 H 0.08 1.46 7.43 -51.93 -0.39 1.08 16 18 N -0.71 -12.25 5.11 -50.86 -0.26 -12.51 16 19 C 0.51 8.39 7.82 -10.99 -0.09 8.31 16 20 O -0.55 -10.76 15.75 5.55 0.09 -10.67 16 21 C -0.06 -0.78 6.19 -29.04 -0.18 -0.96 16 22 C -0.22 -3.13 4.68 -104.25 -0.49 -3.62 16 23 C 0.09 1.25 11.87 -17.59 -0.21 1.04 16 24 N -0.32 -4.78 12.66 30.46 0.39 -4.39 16 25 N -0.28 -3.74 3.90 -10.70 -0.04 -3.78 16 26 C 0.11 1.06 11.19 -16.63 -0.19 0.87 16 27 C -0.17 -1.29 9.98 -39.91 -0.40 -1.69 16 28 C -0.09 -0.80 10.07 -39.52 -0.40 -1.19 16 29 C -0.10 -1.17 10.08 -39.40 -0.40 -1.57 16 30 C 0.12 1.63 6.76 -84.27 -0.57 1.06 16 31 C -0.13 -2.30 6.24 -24.23 -0.15 -2.45 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.82 7.85 -51.93 -0.41 0.41 16 35 H 0.06 0.91 7.88 -51.93 -0.41 0.50 16 36 H 0.07 1.29 6.57 -51.93 -0.34 0.95 16 37 H 0.41 7.19 8.64 -40.82 -0.35 6.84 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.19 1.99 8.06 -52.48 -0.42 1.56 16 41 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 42 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 45 H 0.06 0.97 7.85 -51.93 -0.41 0.56 16 46 H 0.06 1.15 7.98 -51.93 -0.41 0.73 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -33.92 369.90 -8.83 -42.75 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.41 Total: 9.94 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -4.35 Total: -4.14 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 0.45 Total: -60.23 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.19 Total: 16.77 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.92 -8.83 -42.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097242997.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.810 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds