Wall clock time and date at job start Sat Apr 11 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99878 * 2 1 4 4 H 1.48498 * 109.47554 * 274.83331 * 3 2 1 5 5 H 1.48496 * 109.46863 * 34.83939 * 3 2 1 6 6 H 1.48504 * 109.47091 * 154.83150 * 3 2 1 7 7 C 1.38814 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00445 * 189.44238 * 7 2 1 9 9 N 1.36941 * 119.99750 * 9.43411 * 7 2 1 10 10 C 1.47213 * 126.70489 * 194.03312 * 9 7 2 11 11 C 1.53774 * 106.37984 * 211.29215 * 10 9 7 12 12 H 1.09009 * 112.38513 * 219.30891 * 11 10 9 13 13 C 1.54319 * 109.79394 * 95.22013 * 11 10 9 14 14 C 1.55056 * 103.93921 * 221.69085 * 13 11 10 15 15 C 1.55055 * 102.11010 * 40.05086 * 14 13 11 16 16 C 1.54328 * 103.93838 * 319.94940 * 15 14 13 17 17 N 1.46500 * 111.69268 * 262.78511 * 16 15 14 18 18 C 1.34777 * 119.99889 * 298.99118 * 17 16 15 19 19 O 1.21771 * 120.00164 * 4.79237 * 18 17 16 20 20 C 1.41816 * 119.99914 * 184.79898 * 18 17 16 21 21 C 1.38521 * 126.78175 * 1.44327 * 20 18 17 22 22 N 1.32333 * 108.21049 * 179.97438 * 21 20 18 23 23 C 1.33194 * 109.81745 * 359.97438 * 22 21 20 24 24 C 1.40659 * 131.81995 * 180.02562 * 23 22 21 25 25 C 1.36281 * 119.38116 * 180.27214 * 24 23 22 26 26 C 1.40177 * 119.61262 * 359.47655 * 25 24 23 27 27 C 1.35257 * 120.12368 * 0.52800 * 26 25 24 28 28 N 1.35961 * 120.63855 * 359.72734 * 27 26 25 29 29 C 1.48671 * 126.20035 * 14.68411 * 9 7 2 30 30 H 0.96997 * 119.99984 * 359.97438 * 1 2 3 31 31 H 1.09003 * 110.07102 * 92.06095 * 10 9 7 32 32 H 1.08995 * 110.07285 * 330.52073 * 10 9 7 33 33 H 1.09003 * 110.53805 * 103.07562 * 13 11 10 34 34 H 1.09005 * 110.65143 * 340.35976 * 13 11 10 35 35 H 1.09005 * 110.90335 * 281.85284 * 14 13 11 36 36 H 1.08993 * 110.93502 * 158.27174 * 14 13 11 37 37 H 1.08999 * 110.53423 * 201.33194 * 15 14 13 38 38 H 1.09003 * 110.53070 * 78.56448 * 15 14 13 39 39 H 0.96999 * 119.99934 * 118.98356 * 17 16 15 40 40 H 1.08000 * 125.90022 * 359.95011 * 21 20 18 41 41 H 1.07995 * 120.30319 * 359.97438 * 24 23 22 42 42 H 1.08002 * 120.18974 * 179.69928 * 25 24 23 43 43 H 1.07998 * 119.93662 * 180.27714 * 26 25 24 44 44 H 1.07995 * 119.68486 * 179.75142 * 27 26 25 45 45 H 1.09009 * 110.91181 * 29.98529 * 29 9 7 46 46 H 1.08999 * 109.94865 * 267.97661 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3955 2.1055 -1.3950 5 1 1.5024 2.6209 0.7998 6 1 3.5951 1.4129 0.5954 7 6 2.0103 -1.2021 -0.0005 8 1 3.0793 -1.2085 0.1529 9 7 1.3396 -2.3800 -0.1955 10 6 1.8529 -3.7367 0.0552 11 6 1.1715 -4.6550 -0.9730 12 1 0.8948 -5.6202 -0.5485 13 6 2.0871 -4.8331 -2.2023 14 6 1.1156 -4.7452 -3.4076 15 6 0.1574 -3.6071 -2.9706 16 6 -0.0677 -3.8678 -1.4663 17 7 -1.3111 -4.6037 -1.2243 18 6 -2.4927 -4.0700 -1.5924 19 8 -2.5212 -3.0172 -2.2038 20 6 -3.7028 -4.7343 -1.2676 21 6 -3.8354 -5.9159 -0.5570 22 7 -5.1243 -6.2019 -0.4669 23 6 -5.8394 -5.2630 -1.0843 24 6 -7.2254 -5.1087 -1.2677 25 6 -7.6925 -4.0316 -1.9598 26 6 -6.7876 -3.0895 -2.4681 27 6 -5.4583 -3.2554 -2.2813 28 7 -4.9837 -4.3299 -1.5966 29 6 -0.0456 -2.5260 -0.7153 30 1 -0.4850 0.8400 0.0004 31 1 1.5969 -4.0526 1.0666 32 1 2.9340 -3.7590 -0.0819 33 1 2.5771 -5.8064 -2.1764 34 1 2.8276 -4.0345 -2.2491 35 1 0.5730 -5.6814 -3.5389 36 1 1.6491 -4.4759 -4.3191 37 1 -0.7849 -3.6706 -3.5149 38 1 0.6242 -2.6342 -3.1245 39 1 -1.2840 -5.4753 -0.7994 40 1 -3.0265 -6.5028 -0.1475 41 1 -7.9127 -5.8396 -0.8680 42 1 -8.7539 -3.9028 -2.1125 43 1 -7.1522 -2.2316 -3.0135 44 1 -4.7672 -2.5273 -2.6795 45 1 -0.2934 -1.7118 -1.3965 46 1 -0.7533 -2.5494 0.1134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098912883.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:12 Heat of formation + Delta-G solvation = 86.351964 kcal Electronic energy + Delta-G solvation = -30219.152368 eV Core-core repulsion = 26303.703188 eV Total energy + Delta-G solvation = -3915.449180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.99292 -40.06009 -38.07175 -37.44840 -34.32415 -33.80738 -33.36272 -31.50563 -30.61105 -29.79649 -28.82088 -27.60188 -24.70972 -24.68603 -23.95947 -23.49388 -22.33241 -21.17379 -20.58389 -19.77597 -18.79131 -17.85296 -17.03290 -16.83704 -16.42917 -16.23326 -15.84556 -15.62752 -14.74349 -14.59036 -14.49325 -14.19599 -13.94161 -13.72043 -13.54990 -13.35668 -13.15167 -12.62084 -12.41887 -12.13197 -12.04372 -11.95281 -11.28415 -11.15692 -10.95147 -10.91459 -10.72230 -10.62711 -10.55441 -10.38439 -10.30019 -10.13886 -9.97916 -9.90562 -9.70083 -9.44642 -9.07050 -8.56329 -8.55453 -7.97740 -6.77495 -5.70935 -3.06134 0.55777 0.72993 2.26099 2.29988 3.32434 3.41567 3.46629 3.49086 3.56462 3.66947 3.97426 4.36644 4.51981 4.60419 4.67898 4.82833 4.88994 5.00531 5.08235 5.23848 5.28915 5.31151 5.51044 5.59607 5.63731 5.77010 5.79609 5.89221 5.90731 5.94016 6.04446 6.09798 6.14383 6.27759 6.30028 6.31020 6.35868 6.52181 6.67110 6.70011 6.81026 6.82055 6.86779 7.08130 7.44355 7.56491 7.66566 7.81024 7.93426 8.27574 8.56254 9.18397 9.82408 10.53533 11.41862 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012755 B = 0.003600 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.751095 B = 7776.635253 C = 9067.855183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.003 4.003 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.595 5.595 10 C 0.140 3.860 11 C -0.106 4.106 12 H 0.075 0.925 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.112 4.112 16 C 0.150 3.850 17 N -0.700 5.700 18 C 0.593 3.407 19 O -0.536 6.536 20 C -0.130 4.130 21 C 0.100 3.900 22 N -0.498 5.498 23 C 0.237 3.763 24 C -0.094 4.094 25 C -0.087 4.087 26 C -0.151 4.151 27 C 0.082 3.918 28 N -0.322 5.322 29 C 0.180 3.820 30 H 0.253 0.747 31 H 0.015 0.985 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.393 0.607 40 H 0.189 0.811 41 H 0.153 0.847 42 H 0.145 0.855 43 H 0.155 0.845 44 H 0.180 0.820 45 H 0.085 0.915 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.290 -12.864 -5.933 18.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.361 4.361 8 H 0.094 0.906 9 N -0.321 5.321 10 C 0.013 3.987 11 C -0.126 4.126 12 H 0.093 0.907 13 C -0.149 4.149 14 C -0.163 4.163 15 C -0.150 4.150 16 C 0.064 3.936 17 N -0.351 5.351 18 C 0.381 3.619 19 O -0.414 6.414 20 C -0.245 4.245 21 C -0.060 4.060 22 N -0.217 5.217 23 C -0.003 4.003 24 C -0.114 4.114 25 C -0.112 4.112 26 C -0.171 4.171 27 C -0.042 4.042 28 N 0.009 4.991 29 C 0.054 3.946 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.227 0.773 40 H 0.206 0.794 41 H 0.171 0.829 42 H 0.163 0.837 43 H 0.173 0.827 44 H 0.197 0.803 45 H 0.103 0.897 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -11.596 -12.481 -5.943 18.043 hybrid contribution 0.694 1.139 -0.015 1.334 sum -10.902 -11.341 -5.957 16.822 Atomic orbital electron populations 1.69964 1.04938 1.25221 1.55352 1.24878 0.95535 0.97850 1.01785 0.86169 0.78737 0.83737 0.77519 1.21579 1.21789 1.20544 1.18982 0.90826 0.82582 1.43704 0.90644 1.44733 1.12781 0.99861 1.74674 1.21319 0.96613 0.86378 0.94403 1.22811 0.94770 0.97879 0.97142 0.90674 1.22444 0.97592 1.01065 0.93758 1.22604 0.97468 0.98535 0.97688 1.22677 0.99103 0.98919 0.94315 1.22088 0.80927 0.94474 0.96122 1.45641 1.05361 1.21818 1.62267 1.15329 0.82129 0.84526 0.79904 1.90851 1.87329 1.22497 1.40751 1.20065 0.84950 1.02877 1.16606 1.23143 0.94355 0.92815 0.95675 1.70476 1.03484 1.25002 1.22726 1.21089 0.92704 0.87915 0.98588 1.20298 0.89914 1.00055 1.01125 1.21151 1.00832 0.93106 0.96067 1.20958 0.90993 1.01744 1.03454 1.22179 0.97036 0.89964 0.95066 1.42417 1.07142 1.16748 1.32817 1.21622 0.86218 0.91319 0.95462 0.93682 0.96731 0.93556 0.92385 0.90743 0.92384 0.92110 0.91476 0.90152 0.77294 0.79378 0.82892 0.83713 0.82732 0.80294 0.89665 0.96098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.53 10.87 55.49 0.60 -26.92 16 2 C 0.00 -0.08 5.39 -17.43 -0.09 -0.17 16 3 Si 0.91 22.33 29.56 -169.99 -5.03 17.30 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.50 10.28 -15.06 -0.15 -6.65 16 8 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 9 N -0.60 -15.18 3.42 -169.94 -0.58 -15.76 16 10 C 0.14 2.84 6.63 -3.25 -0.02 2.82 16 11 C -0.11 -1.75 3.63 -88.54 -0.32 -2.07 16 12 H 0.07 1.03 7.71 -51.92 -0.40 0.63 16 13 C -0.11 -1.65 6.25 -24.95 -0.16 -1.81 16 14 C -0.13 -1.84 6.92 -24.56 -0.17 -2.01 16 15 C -0.11 -2.05 5.48 -24.95 -0.14 -2.19 16 16 C 0.15 2.82 0.93 -129.73 -0.12 2.70 16 17 N -0.70 -11.29 5.16 -48.46 -0.25 -11.54 16 18 C 0.59 10.55 6.93 -14.89 -0.10 10.44 16 19 O -0.54 -11.31 13.20 5.13 0.07 -11.24 16 20 C -0.13 -2.04 6.84 -83.48 -0.57 -2.61 16 21 C 0.10 1.35 11.32 -17.23 -0.20 1.15 16 22 N -0.50 -7.21 11.25 -12.27 -0.14 -7.34 16 23 C 0.24 3.25 7.77 -156.07 -1.21 2.03 16 24 C -0.09 -0.93 10.10 -39.37 -0.40 -1.33 16 25 C -0.09 -0.69 10.07 -39.56 -0.40 -1.09 16 26 C -0.15 -1.38 10.00 -39.92 -0.40 -1.78 16 27 C 0.08 1.05 10.51 -16.78 -0.18 0.88 16 28 N -0.32 -4.75 2.96 -60.15 -0.18 -4.93 16 29 C 0.18 4.46 3.76 -2.44 -0.01 4.45 16 30 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.90 7.63 -51.93 -0.40 0.50 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.24 7.62 -51.93 -0.40 0.84 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.27 6.50 -51.93 -0.34 0.93 16 38 H 0.08 1.70 7.57 -51.93 -0.39 1.31 16 39 H 0.39 4.92 7.09 -40.82 -0.29 4.64 16 40 H 0.19 1.82 7.38 -52.49 -0.39 1.43 16 41 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 42 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 44 H 0.18 2.47 6.80 -52.49 -0.36 2.11 16 45 H 0.09 2.45 6.31 -51.92 -0.33 2.13 16 46 H 0.02 0.59 8.05 -51.93 -0.42 0.17 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -35.30 366.08 -10.83 -46.13 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.21 Total: 6.03 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -4.64 Total: 2.77 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -0.54 Total: -66.50 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.07 Total: -11.24 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.30 -10.83 -46.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098912883.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.483 kcal (2) G-P(sol) polarization free energy of solvation -35.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds