Wall clock time and date at job start Sat Apr 11 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86810 * 119.99846 * 2 1 4 4 H 1.48497 * 109.47260 * 240.00087 * 3 2 1 5 5 H 1.48501 * 109.46898 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46908 * 119.99900 * 3 2 1 7 7 C 1.38808 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00596 * 170.57250 * 7 2 1 9 9 N 1.36943 * 119.99798 * 350.57550 * 7 2 1 10 10 C 1.48332 * 128.19830 * 164.31305 * 9 7 2 11 11 C 1.54464 * 104.42570 * 138.27004 * 10 9 7 12 12 H 1.08997 * 111.92909 * 263.63422 * 11 10 9 13 13 C 1.54140 * 108.79877 * 139.45054 * 11 10 9 14 14 C 1.54831 * 104.35232 * 224.04693 * 13 11 10 15 15 C 1.54837 * 102.73224 * 38.23063 * 14 13 11 16 16 C 1.55100 * 104.63072 * 25.13199 * 11 10 9 17 17 N 1.46503 * 112.00029 * 237.59630 * 16 11 10 18 18 C 1.34776 * 120.00206 * 180.02562 * 17 16 11 19 19 O 1.21599 * 119.99654 * 0.02562 * 18 17 16 20 20 C 1.47519 * 120.00297 * 179.97438 * 18 17 16 21 21 C 1.46507 * 120.16590 * 0.02562 * 20 18 17 22 22 C 1.35532 * 119.04580 * 179.97438 * 21 20 18 23 23 C 1.41224 * 119.42441 * 0.02562 * 22 21 20 24 24 C 1.37918 * 132.96651 * 180.02562 * 23 22 21 25 25 N 1.33448 * 107.65977 * 179.97438 * 24 23 22 26 26 C 1.30751 * 109.93222 * 359.97438 * 25 24 23 27 27 N 1.35915 * 109.21244 * 0.02562 * 26 25 24 28 28 C 1.36319 * 120.16585 * 179.72334 * 20 18 17 29 29 C 1.48453 * 128.24831 * 344.14674 * 9 7 2 30 30 H 0.96993 * 120.00026 * 359.97438 * 1 2 3 31 31 H 1.09007 * 110.46981 * 19.49949 * 10 9 7 32 32 H 1.09007 * 110.46669 * 257.04141 * 10 9 7 33 33 H 1.08997 * 110.45887 * 342.77235 * 13 11 10 34 34 H 1.09005 * 110.45482 * 105.33194 * 13 11 10 35 35 H 1.08999 * 110.75930 * 156.54101 * 14 13 11 36 36 H 1.09000 * 110.75951 * 279.92142 * 14 13 11 37 37 H 1.08994 * 110.45891 * 80.48499 * 15 14 13 38 38 H 1.08996 * 110.46190 * 202.93008 * 15 14 13 39 39 H 0.97003 * 119.99706 * 0.02562 * 17 16 11 40 40 H 1.08005 * 120.47337 * 0.02562 * 21 20 18 41 41 H 1.07999 * 120.28229 * 180.02562 * 22 21 20 42 42 H 1.08004 * 126.17148 * 0.02562 * 24 23 22 43 43 H 1.08002 * 125.39091 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.75035 * 359.97438 * 28 20 18 45 45 H 1.09003 * 110.34523 * 103.02498 * 29 9 7 46 46 H 1.08996 * 110.60565 * 340.55265 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0794 -1.2083 -0.1537 9 7 1.3395 -2.3801 0.1931 10 6 1.8109 -3.7597 -0.0802 11 6 1.3257 -4.5801 1.1353 12 1 2.1046 -4.6892 1.8899 13 6 0.8103 -5.9455 0.6393 14 6 -0.5092 -6.1640 1.4192 15 6 -1.1236 -4.7432 1.4553 16 6 0.1009 -3.7955 1.6738 17 7 0.2717 -3.4063 3.0758 18 6 -0.6990 -2.7161 3.7067 19 8 -1.7167 -2.4170 3.1122 20 6 -0.5273 -2.3247 5.1186 21 6 0.6972 -2.6838 5.8384 22 6 0.8313 -2.3121 7.1349 23 6 -0.2087 -1.5903 7.7608 24 6 -0.3669 -1.0826 9.0334 25 7 -1.5569 -0.4808 9.0842 26 6 -2.1551 -0.5776 7.9256 27 7 -1.3555 -1.2614 7.0651 28 6 -1.5045 -1.6218 5.7582 29 6 -0.0302 -2.5803 0.7294 30 1 -0.4850 0.8400 0.0004 31 1 2.8986 -3.7847 -0.1471 32 1 1.3647 -4.1399 -0.9992 33 1 0.6183 -5.9135 -0.4332 34 1 1.5272 -6.7319 0.8755 35 1 -1.1632 -6.8543 0.8863 36 1 -0.3067 -6.5231 2.4282 37 1 -1.6231 -4.5200 0.5126 38 1 -1.8223 -4.6512 2.2868 39 1 1.0834 -3.6453 3.5501 40 1 1.4820 -3.2359 5.3428 41 1 1.7257 -2.5659 7.6844 42 1 0.3444 -1.1579 9.8427 43 1 -3.1305 -0.1782 7.6900 44 1 -2.4054 -1.3518 5.2273 45 1 -0.7258 -2.8004 -0.0805 46 1 -0.3577 -1.7006 1.2834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098945166.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:19 Heat of formation + Delta-G solvation = 87.310723 kcal Electronic energy + Delta-G solvation = -30054.808505 eV Core-core repulsion = 26139.400900 eV Total energy + Delta-G solvation = -3915.407605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.83150 -40.14013 -38.38301 -36.72351 -34.39482 -33.86756 -33.13573 -31.57106 -31.08223 -29.09604 -28.26037 -27.81362 -24.96560 -24.69680 -23.91214 -23.06650 -21.96378 -21.43275 -20.32209 -19.80351 -18.83020 -18.13462 -17.17482 -16.75473 -16.51539 -15.98074 -15.68569 -15.30342 -14.92935 -14.76594 -14.71457 -14.25910 -14.11102 -13.69926 -13.64519 -13.47405 -13.07412 -12.67908 -12.50599 -11.94823 -11.78335 -11.73162 -11.42943 -11.25545 -11.02693 -10.92114 -10.85889 -10.75327 -10.57470 -10.47676 -10.40076 -10.10372 -10.03920 -9.85482 -9.75524 -9.47929 -9.36680 -8.65853 -8.48151 -7.71546 -6.83899 -5.75831 -3.12374 0.56954 0.88330 2.34959 2.70411 3.01923 3.37191 3.41916 3.43776 3.45792 3.67333 4.26906 4.43674 4.45599 4.50662 4.64420 4.74808 4.80519 4.83647 4.95525 5.16660 5.26988 5.39207 5.46203 5.59022 5.61896 5.73558 5.74669 5.77624 5.83390 5.91250 5.95532 6.02192 6.07827 6.14742 6.27618 6.29351 6.39995 6.47179 6.51282 6.54474 6.68384 6.77799 6.94724 7.01095 7.36681 7.54532 7.67334 7.77959 7.90200 8.25224 8.54603 9.10793 9.75096 10.52932 11.36366 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009606 B = 0.004142 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.168855 B = 6759.045009 C = 8626.886774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.001 4.001 3 Si 0.907 3.093 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.231 4.231 8 H 0.074 0.926 9 N -0.596 5.596 10 C 0.128 3.872 11 C -0.108 4.108 12 H 0.074 0.926 13 C -0.115 4.115 14 C -0.124 4.124 15 C -0.117 4.117 16 C 0.149 3.851 17 N -0.689 5.689 18 C 0.567 3.433 19 O -0.523 6.523 20 C -0.144 4.144 21 C -0.097 4.097 22 C -0.082 4.082 23 C 0.006 3.994 24 C -0.024 4.024 25 N -0.455 5.455 26 C 0.150 3.850 27 N -0.375 5.375 28 C 0.122 3.878 29 C 0.158 3.842 30 H 0.255 0.745 31 H 0.046 0.954 32 H 0.028 0.972 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.393 0.607 40 H 0.141 0.859 41 H 0.150 0.850 42 H 0.181 0.819 43 H 0.214 0.786 44 H 0.182 0.818 45 H 0.029 0.971 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.073 -10.704 12.428 16.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.199 4.199 3 Si 0.737 3.263 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.092 0.908 9 N -0.319 5.319 10 C 0.001 3.999 11 C -0.129 4.129 12 H 0.092 0.908 13 C -0.153 4.153 14 C -0.162 4.162 15 C -0.156 4.156 16 C 0.062 3.938 17 N -0.339 5.339 18 C 0.352 3.648 19 O -0.401 6.401 20 C -0.150 4.150 21 C -0.118 4.118 22 C -0.102 4.102 23 C -0.102 4.102 24 C -0.177 4.177 25 N -0.168 5.168 26 C -0.125 4.125 27 N -0.047 5.047 28 C 0.000 4.000 29 C 0.032 3.968 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.228 0.772 40 H 0.159 0.841 41 H 0.168 0.832 42 H 0.198 0.802 43 H 0.231 0.769 44 H 0.199 0.801 45 H 0.047 0.953 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.289 -9.735 12.608 15.981 hybrid contribution 1.233 0.462 -0.536 1.421 sum -0.056 -9.273 12.072 15.223 Atomic orbital electron populations 1.69887 1.04932 1.25467 1.54947 1.24883 0.95526 0.97793 1.01723 0.86300 0.78645 0.83447 0.77951 1.20951 1.21557 1.21221 1.18881 0.90624 0.82395 1.44031 0.90815 1.45129 1.14123 0.99780 1.72888 1.21920 0.97425 0.87026 0.93496 1.23017 0.96377 0.94376 0.99133 0.90768 1.22421 0.96528 0.96073 1.00256 1.22516 0.96818 0.97176 0.99662 1.22982 0.96990 0.93183 1.02443 1.22541 0.93975 0.96993 0.80335 1.45607 1.19693 1.55948 1.12639 1.17504 0.84103 0.78509 0.84672 1.90836 1.28467 1.54120 1.66643 1.20626 0.95335 1.03412 0.95656 1.22120 0.96064 0.99643 0.93980 1.20385 0.97372 0.97749 0.94655 1.19773 0.89675 1.06360 0.94435 1.22542 0.96404 1.03697 0.95010 1.69949 1.07173 1.18748 1.20955 1.25199 0.99666 1.02876 0.84726 1.42984 1.15515 1.36967 1.09235 1.21738 1.00969 0.95523 0.81794 1.21973 0.86689 0.95122 0.93034 0.93521 0.93516 0.95435 0.91109 0.92143 0.91995 0.92190 0.90568 0.91570 0.77180 0.84091 0.83212 0.80234 0.76921 0.80144 0.95277 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.99 10.89 55.49 0.60 -26.39 16 2 C 0.00 -0.04 5.40 -17.43 -0.09 -0.13 16 3 Si 0.91 22.09 29.56 -169.99 -5.03 17.07 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.23 -6.34 10.37 -15.06 -0.16 -6.50 16 8 H 0.07 1.95 7.85 -52.48 -0.41 1.54 16 9 N -0.60 -14.78 3.38 -168.36 -0.57 -15.35 16 10 C 0.13 2.52 6.74 -2.26 -0.02 2.50 16 11 C -0.11 -1.72 3.67 -88.15 -0.32 -2.04 16 12 H 0.07 1.07 7.74 -51.93 -0.40 0.67 16 13 C -0.11 -1.49 6.36 -25.17 -0.16 -1.65 16 14 C -0.12 -1.57 6.90 -24.80 -0.17 -1.75 16 15 C -0.12 -1.89 5.75 -23.95 -0.14 -2.02 16 16 C 0.15 2.66 0.93 -128.13 -0.12 2.54 16 17 N -0.69 -11.11 5.26 -45.24 -0.24 -11.34 16 18 C 0.57 9.71 6.91 -12.48 -0.09 9.62 16 19 O -0.52 -10.73 13.91 5.28 0.07 -10.65 16 20 C -0.14 -2.02 5.98 -103.48 -0.62 -2.64 16 21 C -0.10 -1.10 9.73 -37.22 -0.36 -1.46 16 22 C -0.08 -0.85 10.09 -39.41 -0.40 -1.25 16 23 C 0.01 0.07 6.78 -84.02 -0.57 -0.50 16 24 C -0.02 -0.28 12.00 -16.97 -0.20 -0.48 16 25 N -0.46 -5.99 11.19 -13.78 -0.15 -6.14 16 26 C 0.15 1.77 12.76 -89.36 -1.14 0.63 16 27 N -0.38 -4.76 2.94 -61.93 -0.18 -4.95 16 28 C 0.12 1.63 10.51 -16.22 -0.17 1.46 16 29 C 0.16 3.78 4.86 -2.20 -0.01 3.76 16 30 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.05 0.88 8.14 -51.92 -0.42 0.45 16 32 H 0.03 0.55 7.21 -51.93 -0.37 0.17 16 33 H 0.07 0.95 7.19 -51.93 -0.37 0.57 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.31 7.26 -51.93 -0.38 0.93 16 38 H 0.07 1.11 6.83 -51.93 -0.35 0.75 16 39 H 0.39 5.20 6.42 -40.82 -0.26 4.94 16 40 H 0.14 1.26 6.58 -52.48 -0.35 0.91 16 41 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 42 H 0.18 1.57 8.06 -52.48 -0.42 1.14 16 43 H 0.21 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.18 2.24 7.56 -52.49 -0.40 1.84 16 45 H 0.03 0.75 7.24 -51.93 -0.38 0.38 16 46 H 0.10 2.80 5.16 -51.93 -0.27 2.54 16 LS Contribution 366.28 15.07 5.52 5.52 Total: -1.00 -34.34 366.28 -10.74 -45.08 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.04 Total: 7.06 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -4.74 Total: 0.10 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: -0.54 Total: -64.17 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.65 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.34 -10.74 -45.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098945166.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.391 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds